Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011401.1 Kokia drynarioides strain JFW-HI SEQ_126383, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11480
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:4325 original size:19 final size:19

Alignment explanation


    Indices: 4298--4336  Score: 60
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       4288 TTGTTTTAGG

                      *        
       4298 TTTGAGTTTGTATGGTTTT
          1 TTTGAGTTTGCATGGTTTT

                *              
       4317 TTTGGGTTTGCATGGTTTT
          1 TTTGAGTTTGCATGGTTTT

             
       4336 T
          1 T

       4337 GGGTTAGGTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.08, C:0.03, G:0.28, T:0.62


Consensus pattern (19 bp):   
TTTGAGTTTGCATGGTTTT

Found at i:8165 original size:13 final size:13

Alignment explanation


    Indices: 8147--8173  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       8137 GATTACTTAG

                         
       8147 AAAAAATAATATT
          1 AAAAAATAATATT

                         
       8160 AAAAAATAATATT
          1 AAAAAATAATATT

             
       8173 A
          1 A

       8174 TCTAATAATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30


Consensus pattern (13 bp):   
AAAAAATAATATT
Done.