Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011407.1 Kokia drynarioides strain JFW-HI SEQ_126389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 828

Length: 1380
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29


Found at i:888 original size:26 final size:26

Alignment explanation


    Indices: 855--919  Score: 78
    Period size: 26  Copynumber: 2.5  Consensus size: 26

        845 TCCTGTAGCA

                      *                
        855 ACAATTTTGGGCAT-GCTCATGCAGCG
          1 ACAATTTTGGACATCG-TCATGCAGCG

               *                 *  * 
        881 ACATTTTTGGACATCGTCATGTAGTG
          1 ACAATTTTGGACATCGTCATGCAGCG

                         
        907 ACAATTTTGGACA
          1 ACAATTTTGGACA

        920 CAATTCTAAA


Statistics
Matches: 33,  Mismatches: 5, Indels: 2
        0.82            0.12        0.05

Matches are distributed among these distances:
  26   32  0.97
  27    1  0.03

ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32


Consensus pattern (26 bp):   
ACAATTTTGGACATCGTCATGCAGCG
Done.