Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001141.1 Kokia drynarioides strain JFW-HI SEQ_112439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1763
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:402 original size:19 final size:19

Alignment explanation


    Indices: 378--424  Score: 60
    Period size: 19  Copynumber: 2.4  Consensus size: 19

        368 CATTTTAAAA

                                
        378 TAAAATAATTAAA-ATGTAT
          1 TAAAATAATTAAATAT-TAT

                  *            
        397 TAAAATCATTAAATATTAT
          1 TAAAATAATTAAATATTAT

                     
        416 TAACAATAA
          1 TAA-AATAA

        425 ATTATAGAAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  19   18  0.75
  20    6  0.25

ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36


Consensus pattern (19 bp):   
TAAAATAATTAAATATTAT

Found at i:649 original size:13 final size:13

Alignment explanation


    Indices: 631--662  Score: 55
    Period size: 13  Copynumber: 2.5  Consensus size: 13

        621 TGTAAATCGA

                        *
        631 ACTTTTCAAAAGG
          1 ACTTTTCAAAAGC

                         
        644 ACTTTTCAAAAGC
          1 ACTTTTCAAAAGC

                  
        657 ACTTTT
          1 ACTTTT

        663 TTATCGCAGT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38


Consensus pattern (13 bp):   
ACTTTTCAAAAGC
Done.