Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011410.1 Kokia drynarioides strain JFW-HI SEQ_126392, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4053
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:878 original size:18 final size:18

Alignment explanation


    Indices: 839--878  Score: 55
    Period size: 17  Copynumber: 2.3  Consensus size: 18

        829 TTTAAAATTC

                           ** 
        839 AAAAATTCAAAAATTTGT
          1 AAAAATTCAAAAATTAAT

                              
        857 AAAAATT-AAAAATTAAT
          1 AAAAATTCAAAAATTAAT

                 
        874 AAAAA
          1 AAAAA

        879 CTATAAATAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  17   13  0.65
  18    7  0.35

ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28


Consensus pattern (18 bp):   
AAAAATTCAAAAATTAAT
Done.