Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011412.1 Kokia drynarioides strain JFW-HI SEQ_126395, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3338
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Found at i:772 original size:208 final size:209
Alignment explanation
Indices: 3--1041 Score: 883
Period size: 208 Copynumber: 4.9 Consensus size: 209
1 CT
* *
3 TTTCTAACTTCGGTTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAG-ACATTTCCCGAGCAT
1 TTTCTAACTTCAGTTCCTTAAAGTATTCAAGACGAT-CTTTCCTTCGAGCA-ATTTCCCGAACAT
* * * *
67 TCCATGCTCTG-GAAGTCGTATCTTTTGGTCCAAATTGTTTTTCATTTTGTAAACAACTTTTTCT
64 TCCATGCTC-GAGAAATCGCATCTTTTGGTCCAAATTGTTTGTCATTTTGTAAACAACTTTTGCT
* *
131 CTTTGAATTAAAAACTTATTTATGTGAGAATATTATCACTCCTGGTTCCTGGACGAACTTCCGAA
128 CTTTGAATTAAAAACTTATTTATGTGAGAAT-TTATCTCTCCTGGTTCTTGGACGAAC-TCCG-A
196 CTTGTCAAACTTTTACGAGTTC
190 -TTGTCAAAC-TTTACGAGTTC
** * ** **
218 TTT-TATACTTTTGGTTCCTTAAAGTATTCAAGACGATCATAACTTCGAGCAATTTCAAGAACAT
1 TTTCTA-AC-TTCAGTTCCTTAAAGTATTCAAGACGATCTTTCCTTCGAGCAATTTCCCGAACAT
* * * * *
282 TCCATGCTCGATAAATCGCATTTTTTGGTCCAAATAGTTTGTCA---TGTAAACAAATTTTGGTC
64 TCCATGCTCGAGAAATCGCATCTTTTGGTCCAAATTGTTTGTCATTTTGTAAACAACTTTTGCTC
* * * *
344 TTTGAATTAAAAACTTATTTACGTGGGAATTTTATCTCTCTTGGTTCTTGGACAAACTTCCGAAC
129 TTTGAATTAAAAACTTATTTATGTGAGAA-TTTATCTCTCCTGGTTCTTGGACGAAC-TCCG-A-
409 TTGTCAAACTTTTACGAGTTC
190 TTGTCAAAC-TTTACGAGTTC
* * * * * * * * *
430 GTTTATAACTTCATTTCCTTAAAGTATCCAAGATGATTTATTCCTTCAAGCTATTTTCTGAACAT
1 -TTTCTAACTTCAGTTCCTTAAAGTATTCAAGACGATCT-TTCCTTCGAGCAATTTCCCGAACAT
* * * ** *
495 TTCATGCTCGAGAAATTGCATCATTTGGTCCAAATAT-TTTGTCATTTTGTAGGCAACTTTTGGT
64 TCCATGCTCGAGAAATCGCATCTTTTGGTCCAAAT-TGTTTGTCATTTTGTAAACAACTTTTGCT
* *
559 CTTTGAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAAC-CTG-TT
128 CTTTGAATTAAAAACTTATTTATGTGAGAATT-TATCTCTCCTGGTTCTTGGACGAACTCCGATT
** *
622 -T-AAGA-TTTAAAACTTC
192 GTCAA-ACTTTACGAGTTC
* * *
638 ATTTCTAACTTCAATTCCTTTAAGTATTCAAGACGATCCTTTCCTTCGAG-ACATTTCCCGAGCA
1 -TTTCTAACTTCAGTTCCTTAAAGTATTCAAGACGAT-CTTTCCTTCGAGCA-ATTTCCCGAACA
* * * *
702 TTCCATGCTCTAGAAGTCGCATCTTTTGGTCCAAATTGTTTTTCATTTCGTAAACAACTTTTGCT
63 TTCCATGCTCGAGAAATCGCATCTTTTGGTCCAAATTGTTTGTCATTTTGTAAACAACTTTTGCT
* * * * *
767 CTTTGAATTAAAAACTTATTTATGTGAGAACATTATCTCTCCTGGTTCCTT-TACAAAGTTTCGA
128 CTTTGAATTAAAAACTTATTTATGTGAGAA-TTTATCTCTCCTGGTT-CTTGGACGAA-CTCCG-
*
831 ACTTTTCAAACTTAAACTTTTACGAGTTC
189 A-TTGT----C--AAAC-TTTACGAGTTC
* * * * * * **
860 TTTTATAACCTCTA-TTCCTCAAAGTATTCAAGGCAATCCTTTCCTTTGAGCAATTTTACGAACA
1 -TTTCTAACTTC-AGTTCCTTAAAGTATTCAAGACGAT-CTTTCCTTCGAGCAATTTCCCGAACA
* * ** * * * * *
924 TTCCATGCTCGAAAAATCGCAT-TAGTTGGTCTGAATAGTTT-TTA-CTTGGAAACAAATTTTTG
63 TTCCATGCTCGAGAAATCGCATCT-TTTGGTCCAAATTGTTTGTCATTTTGTAAAC-AACTTTTG
* * *
986 -TCTTTGAATTAAAAACTTATTTACGTGAGTATTTTATCTCTCTTGGTTCTTGGACG
126 CTCTTTGAATTAAAAACTTATTTATGTGAG-AATTTATCTCTCCTGGTTCTTGGACG
1042 GACTTATCAA
Statistics
Matches: 671, Mismatches: 113, Indels: 75
0.78 0.13 0.09
Matches are distributed among these distances:
207 1 0.00
208 157 0.23
209 7 0.01
210 3 0.00
211 2 0.00
212 116 0.17
213 63 0.09
214 8 0.01
215 62 0.09
216 94 0.14
219 3 0.00
220 51 0.08
221 13 0.02
222 89 0.13
223 2 0.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (209 bp):
TTTCTAACTTCAGTTCCTTAAAGTATTCAAGACGATCTTTCCTTCGAGCAATTTCCCGAACATTC
CATGCTCGAGAAATCGCATCTTTTGGTCCAAATTGTTTGTCATTTTGTAAACAACTTTTGCTCTT
TGAATTAAAAACTTATTTATGTGAGAATTTATCTCTCCTGGTTCTTGGACGAACTCCGATTGTCA
AACTTTACGAGTTC
Found at i:1912 original size:215 final size:216
Alignment explanation
Indices: 1066--3338 Score: 2314
Period size: 215 Copynumber: 10.8 Consensus size: 216
1056 TGAGGAGTTC
* * * * * *
1066 TTTACATGAGAATTGTTTCACTCCTGGTTTTTGGACAAACTTTCGAACATGTCAAACTTTTACGA
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * *
1131 ATTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCATTGCTTCGAGCTATTTTTCGA
66 GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTTTCGA
* * ** * * * * *
1196 GTAGTGTATGATTTG-GAAGTCACATCATTTGGTCCAAATAGTTTGTCA-TTTGTAACCAACTTT
131 GCAATCCATG-CTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
* *
1259 TGGTCTGTGAAATAAAAACTTA
195 TGGTCTTTGAATTAAAAACTTA
* * *
1281 TTTCCAAGAGAGTTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * **
1346 GTTCTTTTAAAACTTTAGTT-CTTAAAGTATTCAAGACGATCCACCCCTTCGAGCTATTTTAT-G
66 GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTT-TCG
* * * *
1409 AACAATCCATGC-CGAGAAATCGCATCATTTTGTCCAAATAGTTTTTCATTTTGTAAATAACTTT
130 AGCAATCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
* *
1473 CGCTCTTTGAATTAAAAACTTA
195 TGGTCTTTGAATTAAAAACTTA
**
1495 TTTATGTGAGAATTGTATCTCTCTTGGTTCTT-G--G-A----CGAACTTGTCAAACTTTTACGA
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * * * **
1552 GTTCTATTACAACTTC-GATTCCTTAAAGTATTCATGATGATTCATTCCTTCTAGGAATTTTTCG
66 GTTCTTTTATAACTTCAG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTTTCG
* * * * * *
1616 AGCATTCCATGCTCGGGAAATCACATCATCTGGTCCAAATAGTTGGTC-TTTTGTAACCAACTTT
130 AGCAATCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
1680 TGGTCTTTGAATTAAAAACTTA
195 TGGTCTTTGAATTAAAAACTTA
* * *
1702 TTTACAAGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTTATGA
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * *
1767 GTTCTTTTAAAACTTAAGTT-CTTAAAGTATTCAAGACGATCCACT-CTATCGAGCTATTTTTTG
66 GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCTATTTTTCG
* * * *
1830 AACAATCCATGCTCGAGAAATCGCATCATTTTGTCCAAATAGTTTTTCATTTTGTAAATAACTTT
130 AGCAATCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
1895 TGGTCTTTGAATTAAAAACTTA
195 TGGTCTTTGAATTAAAAACTTA
** *
1917 TTTATGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAAC-TT---A----TCAAGCTTTTACGA
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * *
1974 GTTCTTTTATAACTTCAATTCCATAAAGTATT--------T---TTCCATCGAGAC-ATTTCTCG
66 GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CTATTTTTCG
* * * * *
2027 AGCATTCCATGCTCGAAAAATCGTATCATTTGGTCCAAATAGTTTTTCATTTTGTAAACAAATTT
130 AGCAATCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
*
2092 TGGTCATTGTGCA--AAAAACTTA
195 TGGTC-TT-TGAATTAAAAACTTA
* * * * *
2114 TTTACATGAGAATTGTTTCACTCCTGGTTTTTGGACAAACTTTCGAACTTGTCAAACTTTTACGA
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * *
2179 ATTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGACCCATTGCTTCGAGCTATTTTTCGA
66 GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTTTCGA
* ** * * * * *
2244 GCAGTGTATGAT-TAGGAAGTCGTATCATTTGGTCCAAATAGTTTGTCA-TTTGTAACCAACTTT
131 GCAATCCATGCTCGA-GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
* *
2307 TGGTCTGTGAAATAAAAACTTA
195 TGGTCTTTGAATTAAAAACTTA
* * * *
2329 TTTCCAAGCGAGTTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * *
2394 GTTCTTTTAAAACTTTAGTT-CTTAAATTATTCAAGACGATCCACTCCTTCGAGCTATTTTAT-G
66 GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTT-TCG
* * * * *
2457 AACAATCCATG-TCGAGAAATTGCATCATTTTGTCCAAATAGTTTTTCATTTTGTAAATAACTTT
130 AGCAATCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
* *
2521 CGCTCTTTGAATTAAAAACTTA
195 TGGTCTTTGAATTAAAAACTTA
**
2543 TTTATGTGAGAATTGTATCTCTCTTGGTTCTT-G--G-A----CGAACTTGTCAAACTTTTACGA
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * * * **
2600 GTTCTTTTGTAACTTCCA-TTCCTTAAAGCATTCATGATGATCCGTTCCTTCTAGGAATTTTTCG
66 GTTCTTTTATAACTT-CAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTTTCG
* * * * * * *
2664 AGCATTCCACGCTCGGGAAATCACATCATCTGGTCCAAATAGTCTGTC-TTTTGTAACCAACTTT
130 AGCAATCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
*
2728 TGGTCTTTGAATTAAAGACTTA
195 TGGTCTTTGAATTAAAAACTTA
* *
2750 TTTACAAGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATGA
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * *
2815 GTTCTTTTAAAACTTCAGTT-CTTAAAGTATTCAAGAAGATCCACTCCATCGAGCTA-TTTTCTG
66 GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTTTC-G
* * * * *
2878 AACGATCCATGCTCGAGAAATCGCAGCATTTTGTCCAAATAGTTT-TCCATTTTGTAAATAACTT
130 AGCAATCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGT-CATTTTGTAAACAACTT
2942 TTGGTCTTTGAATTAAAAACTTA
194 TTGGTCTTTGAATTAAAAACTTA
* *
2965 TTT-CTGTGTGAATTGTATCTCTCTTGGTTCTTGGACGAAC-TT---A----TCAAACTTTTACG
1 TTTAC-ATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACG
* * * * * *
3021 ACTTCCTTTATAACTTCAATTCCATAAAGTA-T-----C--T---TTCCATCGAGAC-A-TTTCC
65 AGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CTATTTTTC
* * * *
3073 TGAGC-ATACCATGCTCGAAAAATCGCATCATTTGGTCTAAGTAGTTTGTCATTTTGTAAACAAA
129 -GAGCAAT-CCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC
**
3137 TTTTGGTCTTTGTGTTAAAAACTTA
192 TTTTGGTCTTTGAATTAAAAACTTA
* * * * * * * *
3162 TTTCCAAGAGAATTGTTTCACTCCTGGTT-TTCGAACAAACTTTCGAACTTGTCAAAATTTTACG
1 TTTACATGAGAATTGTATCTCTCTTGGTTCTT-GGACGAACTTTCGAACTTGTCAAACTTTTACG
* * * * *
3226 AATTATTTTATAACTTCAGTTCCTTAAATTATTCAAGGCGATCCATTGCTTCGAGCTATTTTTCG
65 AGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTTTCG
* ** * *
3291 AGCATTATATGATCGAGAAATCGCATCATTTAGTCCAAATAGTTTGTC
130 AGCAATCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTC
Statistics
Matches: 1687, Mismatches: 277, Indels: 187
0.78 0.13 0.09
Matches are distributed among these distances:
196 4 0.00
197 232 0.14
198 11 0.01
199 3 0.00
200 2 0.00
201 2 0.00
205 80 0.05
206 77 0.05
207 268 0.16
208 78 0.05
210 4 0.00
211 7 0.00
212 1 0.00
213 72 0.04
214 346 0.21
215 392 0.23
216 103 0.06
217 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (216 bp):
TTTACATGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTTTTCGA
GCAATCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
GGTCTTTGAATTAAAAACTTA
Found at i:2700 original size:421 final size:419
Alignment explanation
Indices: 2032--3335 Score: 1506
Period size: 421 Copynumber: 3.1 Consensus size: 419
2022 TCTCGAGCAT
* * * * *
2032 TCCATGCTCGAAAAATCGTATCATTTGGTCCAAATAGTTTTTCATTTTGTAAACAAATTTTGGTC
1 TCCATGCTCGAGAAATCGCATCATTTTGTCCAAATAGTTTTTCATTTTGTAAATAACTTTTGGTC
* ** * * * *
2097 ATTGTGCA--AAAAACTTATTTACATGAGAATTGTTTCACTCCTGGTTTTTGGACAAACTTTCGA
66 -TT-TGAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTTGGTTCTTGG----A----CGA
*
2160 ACTTGTCAAACTTTTACGAATTCTTTTATAACTT-CAGTTCCTTAAAGTATTCAAGATGACCCAT
121 ACTTGTCAAACTTTTACGAATTCTTTTATAACTTCCA-TTCCTTAAAG-ATTC-AGATGATCCAT
* ** * ** * ** * *
2224 TGCTTCGAGCTATTTTTCGAGCAGTGTATGATTAGGAAGTCGTATCATTTGGTCCAAATAGTTTG
183 TCCTTCGAGGAATTTTTCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * *
2289 TCATTTGTAACCAACTTTTGGTCTGTGAAATAAAAACTTATTTCCAAGCGAGTTGTATCTCTCTT
248 TCATTTGTAACCAACTTTTGGTCTTTGAATTAAAAACTTATTTCCAAGAGAATTGTATCTCTCTT
*
2354 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTTAGTTCTTAA
313 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCAGTTCTTAA
2419 ATTATTCAAGACGATCCACTCCTTCGAGCTATTTTATGAACAA
378 ATTATTCAAGACGATCCACTCCTTCGAGCTATTTT-TGAACAA
* * *
2462 TCCATG-TCGAGAAATTGCATCATTTTGTCCAAATAGTTTTTCATTTTGTAAATAACTTTCGCTC
1 TCCATGCTCGAGAAATCGCATCATTTTGTCCAAATAGTTTTTCATTTTGTAAATAACTTTTGGTC
2526 TTTGAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTGTCAAA
66 TTTGAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTGTCAAA
* * * *
2591 CTTTTACGAGTTCTTTTGTAACTTCCATTCCTTAAAGCATTCATGATGATCCGTTCCTTCTAGGA
131 CTTTTACGAATTCTTTTATAACTTCCATTCCTTAAAG-ATTCA-GATGATCCATTCCTTCGAGGA
* * * * *
2656 ATTTTTCGAGCATTCCACGCTCGGGAAATCACATCATCTGGTCCAAATAGTCTGTCTTTTGTAAC
194 ATTTTTCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAC
* *
2721 CAACTTTTGGTCTTTGAATTAAAGACTTATTTACAAGAGAATTGTATCTCTCTTGGTTCTTGGAC
259 CAACTTTTGGTCTTTGAATTAAAAACTTATTTCCAAGAGAATTGTATCTCTCTTGGTTCTTGGAC
* *
2786 GAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTAAAACTTCAGTTCTTAAAGTATTCAAGA
324 GAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCAGTTCTTAAATTATTCAAGA
* * *
2851 AGATCCACTCCATCGAGCTATTTTCTGAACGA
389 CGATCCACTCCTTCGAGCTATTTT-TGAACAA
* *
2883 TCCATGCTCGAGAAATCGCAGCATTTTGTCCAAATAGTTTTCCATTTTGTAAATAACTTTTGGTC
1 TCCATGCTCGAGAAATCGCATCATTTTGTCCAAATAGTTTTTCATTTTGTAAATAACTTTTGGTC
* * *
2948 TTTGAATTAAAAACTTATTTCTGTGTGAATTGTATCTCTCTTGGTTCTTGGACGAACTTATCAAA
66 TTTGAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTGTCAAA
* * * * * *
3013 CTTTTACGACTTCCTTTATAACTTCAATTCC--ATA-A---AG-T-AT-CTTTCCATCGA-GACA
131 CTTTTACGAATTCTTTTATAACTTCCATTCCTTAAAGATTCAGATGATCCATTCCTTCGAGGA-A
* * ** * *
3068 -TTTCCTGAGCATACCATGCTCGAAAAATCGCATCATTTGGTCTAAGTAGTTTGTCATTTTGTAA
195 TTTTTC-GAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTGTAA
* * ** * * * *
3132 ACAAATTTTGGTCTTTGTGTTAAAAACTTATTTCCAAGAGAATTGTTTCACTCCTGGTT-TTCGA
258 CCAACTTTTGGTCTTTGAATTAAAAACTTATTTCCAAGAGAATTGTATCTCTCTTGGTTCTT-GG
* * * * *
3196 ACAAACTTTCGAACTTGTCAAAATTTTACGAATTATTTTATAACTTCAGTTCCTTAAATTATTCA
322 ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCAGTT-CTTAAATTATTCA
* * * * *
3261 AGGCGATCCATTGCTTCGAGCTATTTTTCGAGCAT
386 AGACGATCCACTCCTTCGAGCTATTTTT-GAACAA
** * *
3296 TATATGATCGAGAAATCGCATCATTTAGTCCAAATAGTTT
1 TCCATGCTCGAGAAATCGCATCATTTTGTCCAAATAGTTT
3336 GTC
Statistics
Matches: 756, Mismatches: 107, Indels: 39
0.84 0.12 0.04
Matches are distributed among these distances:
410 6 0.01
411 51 0.07
412 106 0.14
413 73 0.10
414 1 0.00
415 1 0.00
418 1 0.00
420 3 0.00
421 271 0.36
422 144 0.19
425 1 0.00
427 3 0.00
428 2 0.00
429 87 0.12
430 6 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (419 bp):
TCCATGCTCGAGAAATCGCATCATTTTGTCCAAATAGTTTTTCATTTTGTAAATAACTTTTGGTC
TTTGAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTGTCAAA
CTTTTACGAATTCTTTTATAACTTCCATTCCTTAAAGATTCAGATGATCCATTCCTTCGAGGAAT
TTTTCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAACCA
ACTTTTGGTCTTTGAATTAAAAACTTATTTCCAAGAGAATTGTATCTCTCTTGGTTCTTGGACGA
ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCAGTTCTTAAATTATTCAAGACG
ATCCACTCCTTCGAGCTATTTTTGAACAA
Done.