Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011419.1 Kokia drynarioides strain JFW-HI SEQ_126403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921
Length: 1536
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Found at i:398 original size:215 final size:216
Alignment explanation
Indices: 8--1536 Score: 1466
Period size: 215 Copynumber: 7.1 Consensus size: 216
1 CAAAGGC
* *
8 CAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
1 CAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
* * * * * * * * *
73 TTCAAAAAATTGGTTGAAAGATTAGTTCGTCTTGAATACTTTAAGGAACCGAAG-CTATAAAAGA
66 TTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAACACTTTAAGGAACCGAGGTTTA-AAAAGA
* * * * * *
137 ACTCATAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGA-GCAAGAGAGACACAATTCACACTTA
130 ACTCATAAAAGTTCGACAAGTTCGGAAGTTCATCCAACATCCAAGAGAGAAACAATTCTCACGTA
201 AATAAGTTTTTAATTCAAAGAT
195 AATAAGTTTTTAATTCAAAGAT
* ** * ** *
223 CAAAACTTGTTTACAAAATGAAAAACTATTTACCCCAAATGATGCGATTTCCCTCGCATGGAATG
1 CAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
* * * *
288 CTCGAAAAATTACTCGAAAGAATGGATTGTCTTGAACACTTTAAGGAACTG-GGTTTAAAAAGAA
66 TTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAACACTTTAAGGAACCGAGGTTTAAAAAGAA
* * * * *
352 CT-AGCAAAAGTTTGACAAGTTCGGAAGTTCATCCACCATCCAAGAGAGAAACAATTGTCATGTA
131 CTCA-TAAAAGTTCGACAAGTTCGGAAGTTCATCCAACATCCAAGAGAGAAACAATTCTCACGTA
* *
416 AATAAGTTTTTAATTCAATG-G
195 AATAAGTTTTTAATTCAAAGAT
* * * * * *
437 CAAAAACTTGTTTACAAAATCACAAACCTATTAGACGAAATGATGTGACTTCCCGAGCATGTAAT
1 C-AAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAAT
* * ** * * * * *
502 GTTCGGAAAATTGCTCG-AAGTATTGTTTCATCTTGCATACTTTAAGGAACCGAAG-CTATAAAA
65 GTTCGAAAAATTGCTCGAAAG-AATGGATCGTCTTGAACACTTTAAGGAACCGAGGTTTA-AAAA
* * * **
565 GAACTCATAAAAGTTCGACAAGTTCGTAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTGCG
128 GAACTCATAAAAGTTCGACAAGTTCGGAAGTTCATCCAACATCCAAGAGAGAAACAATTCTCACG
*
630 TAAATAAGTTTATAATTCAAAGAT
193 TAAATAAGTTTTTAATTCAAAGAT
* * * * ** *
654 CAAAACATGTTTACAAAATCAAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAAT
1 CAAAACTTGTTTACAAAAT-GAAAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAAT
* * * * *
719 GTTTCG-AAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTGAGGAACTG-GATTTGAAAAA
65 G-TTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAACACTTTAAGGAACCGAGGTTT-AAAAA
* * * * *
782 GAACT-AGTAAAAGTTTGACAAGATCGGAAGTACATCCAACGTCCAAGA-A-AATCAATTCTCAC
128 GAACTCA-TAAAAGTTCGACAAGTTCGGAAGTTCATCCAACATCCAAGAGAGAAACAATTCTCAC
* **
844 GTAAATATGTTTTTAATTCAAAGGC
192 GTAAATAAGTTTTTAATTCAAAGAT
* * * * * *
869 CAAAACATATTTACAAAATGACAAACTTTTTAGACCAAACGATGCGACTTCCCGAGCATTTAACG
1 CAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
* * * * * * *
934 TTC-AGAAAATTGCTCG-AAGTATTGTATCGGCTTG-ACTAATTTATGGAACCGAAG-ATATAAA
66 TTCGA-AAAATTGCTCGAAAG-AATGGATCGTCTTGAAC-ACTTTAAGGAACCGAGGTTTA-AAA
** * *
995 AGAACTCATAAAAGTTCGACAAGTTTAGAAGTTCATCCAAGAAT-CGAGAGAGAAACAATTCTCA
127 AGAACTCATAAAAGTTCGACAAGTTCGGAAGTTCATCCAA-CATCCAAGAGAGAAACAATTCTCA
* *
1059 CGTAAATAAGTTTATAA-TCAAAGAA
191 CGTAAATAAGTTTTTAATTCAAAGAT
* * * * * * ** *
1084 GAAAACATGTTTACAAAATGATAAACTTTTTACACCAAATGATGTGATTTCCCTCGCATGGAATG
1 CAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
* * * * *
1149 TTTTG-AAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAGCCTGA--TCTAAAAAA
66 -TTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAACACTTTAAGGAACC-GAGGT-TTAAAAA
* * * * * * * * * *
1211 GAACTCATAAAAGTTTGACAATTTTGTATGTTCGTCCAACAACTAAGAGAGAAATAATTTTCACG
128 GAACTCATAAAAGTTCGACAAGTTCGGAAGTTCATCCAACATCCAAGAGAGAAACAATTCTCACG
**
1276 TAAATAAGTTTTTAATTCAAAGGC
193 TAAATAAGTTTTTAATTCAAAGAT
* * *
1300 CAAAACTTATTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
1 CAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
* * * * * *
1365 TTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAA-A
66 TTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAACACTTTAAGGAACCG-AGGTTTAAAAAGA
* * * * * * * * *
1429 ACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGA-GCAAGAGAGACACATTTCACACTTA
130 ACTCATAAAAGTTCGACAAGTTCGGAAGTTCATCCAACATCCAAGAGAGAAACAATTCTCACGTA
*
1493 AATAATTTTTTAATTCAAAGAT
195 AATAAGTTTTTAATTCAAAGAT
*
1515 TAAAACTTGTTTACAAAATGAA
1 CAAAACTTGTTTACAAAATGAA
Statistics
Matches: 1049, Mismatches: 227, Indels: 76
0.78 0.17 0.06
Matches are distributed among these distances:
213 9 0.01
214 152 0.14
215 493 0.47
216 268 0.26
217 119 0.11
218 8 0.01
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (216 bp):
CAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
TTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAACACTTTAAGGAACCGAGGTTTAAAAAGAA
CTCATAAAAGTTCGACAAGTTCGGAAGTTCATCCAACATCCAAGAGAGAAACAATTCTCACGTAA
ATAAGTTTTTAATTCAAAGAT
Found at i:920 original size:431 final size:428
Alignment explanation
Indices: 1--1536 Score: 2071
Period size: 431 Copynumber: 3.6 Consensus size: 428
* * *
1 CAAAGGCCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
1 CAAAGGCCAAAACTTATTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
* *
66 TGTAATGTTCAAAAAATTGGTTGAAAG-ATTAGT-TCGTCTTGAATACTTTAAGGAACCGAAGCT
66 TGTAATGTTCAAAAAATTGCTCG-AAGTATT-GTATCGTCTTGAATACTTTAAGGAACCGAAGCT
* *
129 ATAAAAGAACTCATAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAGCAAGAGAGACACAATTC
129 ATAAAAGAACTCATAAAAGTTCGACAAGTTC-GAAGTTCATCCAAGAGCAAGAGAGAAACAATTC
* * * *
194 ACACTTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTACCCC
193 ACACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTACACC
* * *
259 AAATGATGCGATTTCCCTCGCATGGAATG-CTCGAAAAATTACTCGAAAGAATGGATTGTCTTGA
258 AAATGATGCGATTTCCCTCGCATGGAATGTTTCG-AAAATTACTCGAAGGAATGGATCGTCTTGA
* * *
323 ACACTTTAAGGAACTGGGTTTAAAAAGAACTAGCAAAAGTTTGACAAGTTCGGAAGTTCATCCAC
322 ACACTTTAAGGAACTGGATTTAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAA
* * *
388 CATCCAAGAGAGAAACAATTGTCATGTAAATAAGTTTTTAATT
387 CATCCAAGAGA-AATCAATTCTCACGTAAATAAGTTTTTAATT
* * * * * * * *
431 CAATGGCAAAAACTTGTTTACAAAATCACAAACCTATTAGACGAAATGATGTGACTTCCCGAGCA
1 CAAAGGCCAAAACTTATTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
** * * *
496 TGTAATGTTCGGAAAATTGCTCGAAGTATTGTTTCATCTTGCATACTTTAAGGAACCGAAGCTAT
66 TGTAATGTTCAAAAAATTGCTCGAAGTATTGTATCGTCTTGAATACTTTAAGGAACCGAAGCTAT
* *
561 AAAAGAACTCATAAAAGTTCGACAAGTTCGTAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
131 AAAAGAACTCATAAAAGTTCGACAAGTTCG-AAGTTCATCCAAG-AGCAAGAGAGAAACAATTCA
** * *
626 TGCGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATCAAAAAACTATTTAGACC
194 CACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAAT-GAAAAACTATTTACACC
691 AAATGATGCGATTTCCCTCGCATGGAATGTTTCGAAAATTACTCGAAGGAATGGATCGTCTTGAA
258 AAATGATGCGATTTCCCTCGCATGGAATGTTTCGAAAATTACTCGAAGGAATGGATCGTCTTGAA
* * *
756 CACTTTGAGGAACTGGATTTGAAAAAGAACTAGTAAAAGTTTGACAAGATCGGAAGTACATCCAA
323 CACTTTAAGGAACTGGATTT-AAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAA
* *
821 CGTCCAAGA-AAATCAATTCTCACGTAAATATGTTTTTAATT
387 CATCCAAGAGAAATCAATTCTCACGTAAATAAGTTTTTAATT
* *
862 CAAAGGCCAAAACATATTTACAAAATGACAAACTTTTTAGACCAAACGATGCGACTTCCCGAGCA
1 CAAAGGCCAAAACTTATTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
* * * * * * * *
927 TTTAACGTTCAGAAAATTGCTCGAAGTATTGTATCGGCTTGACTAATTTATGGAACCGAAGATAT
66 TGTAATGTTCAAAAAATTGCTCGAAGTATTGTATCGTCTTGAATACTTTAAGGAACCGAAGCTAT
* * * *
992 AAAAGAACTCATAAAAGTTCGACAAGTTTAGAAGTTCATCCAAGAATCGAGAGAGAAACAATTCT
131 AAAAGAACTCATAAAAGTTCGACAAG-TTCGAAGTTCATCCAAG-AGCAAGAGAGAAACAATTCA
** * *
1057 CACGTAAATAAGTTTATAA-TCAAAGAAGAAAACATGTTTACAAAATGATAAACTTTTTACACCA
194 CACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTACACCA
* *
1121 AATGATGTGATTTCCCTCGCATGGAATGTTTTGAAAATTACTCGAAGGAATGGATCGTCTTGAAC
259 AATGATGCGATTTCCCTCGCATGGAATGTTTCGAAAATTACTCGAAGGAATGGATCGTCTTGAAC
* * * * * * *
1186 ACTTTAAGGAGCCT-GATCTAAAAAAGAACTCA-TAAAAGTTTGACAATTTTGTATGTTCGTCCA
324 ACTTTAAGGA-ACTGGAT-TTAAAAAGAACT-AGTAAAAGTTTGACAAGTTCGGAAGTTCATCCA
* * *
1249 ACAACTAAGAGAGAAAT-AATTTTCACGTAAATAAGTTTTTAATT
386 ACATC-CA-AGAGAAATCAATTCTCACGTAAATAAGTTTTTAATT
* *
1293 CAAAGGCCAAAACTTATTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
1 CAAAGGCCAAAACTTATTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
* *
1358 TGTAATGTTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTAT
66 TGTAATGTTCAAAAAATTGCTCGAAGTATTGTATCGTCTTGAATACTTTAAGGAACCGAAGCTAT
* * * * *
1423 AAAAAAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAGCAAGAGAGACACATTTCAC
131 AAAAGAACTCATAAAAGTTCGACAAGTTCG-AAGTTCATCCAAGAGCAAGAGAGAAACAATTCAC
* * * * *
1488 ACTTAAATAATTTTTTAATTCAAAGATTAAAACTTGTTTACAAAATGAA
195 ACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATGAA
Statistics
Matches: 970, Mismatches: 120, Indels: 31
0.87 0.11 0.03
Matches are distributed among these distances:
429 132 0.14
430 213 0.22
431 476 0.49
432 98 0.10
433 51 0.05
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (428 bp):
CAAAGGCCAAAACTTATTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
TGTAATGTTCAAAAAATTGCTCGAAGTATTGTATCGTCTTGAATACTTTAAGGAACCGAAGCTAT
AAAAGAACTCATAAAAGTTCGACAAGTTCGAAGTTCATCCAAGAGCAAGAGAGAAACAATTCACA
CGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTACACCAAA
TGATGCGATTTCCCTCGCATGGAATGTTTCGAAAATTACTCGAAGGAATGGATCGTCTTGAACAC
TTTAAGGAACTGGATTTAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAACATC
CAAGAGAAATCAATTCTCACGTAAATAAGTTTTTAATT
Found at i:1505 original size:646 final size:646
Alignment explanation
Indices: 1--1536 Score: 1792
Period size: 646 Copynumber: 2.4 Consensus size: 646
1 CAAAGGCCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
1 CAAAGGCCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
* * * * *
66 TGTAATGTTCAAAAAATTGGTTGAAAGATTAGTTCGTCTTGAATACTTTAAGGAACCGAAGCTAT
66 TGTAATGTTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTAT
* *
131 AAAAGAACTCATAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAGCAAGAGAGACACAATTCAC
131 AAAAAAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAGCAAGAGAGACACAATTCAC
* *
196 ACTTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTACCCCAA
196 ACTTAAATAATTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTACACCAA
* * ** * * *
261 ATGATGCGATTTCCCTCGCATGGAATGCTCGAAAAATTACTCGAAAGAATGGATTGTCTTGAACA
261 ACGATGCGACTTCCCGAGCATGGAACGCTCGAAAAATTACTCGAAAGAATGGATCGGCTTGAACA
* * * * * * *
326 CTTTAAGGAACTGGGTTTAAAAAGAACTAGCAAAAGTTTGACAAGTTCGGAAGTTCATCCACCAT
326 ATTTAAGGAACCGGATATAAAAAGAACTAGCAAAAGTTCGACAAGTTCAGAAGTTCATCCACAAT
* * * * * *
391 CCAAGAGAGAAACAATTGTCATGTAAATAAGTTTTTAATTCAATGGCAAAAACTTGTTTACAAAA
391 CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTATAATTCAATAGAAAAAACATGTTTACAAAA
* * * *
456 TCACAAACCTATTAGACGAAATGATGTGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAA
456 TCACAAACCTATTACACCAAATGATGTGACTTCCCGAGCATGGAATGTTCGGAAAATTACTCGAA
* * ** * * *
521 GTATTGTTTCATCTTGCATACTTTAAGGAACCGAAGCTATAAAAGAACTCATAAAAGTTCGACAA
521 GGAATGGATCATCTTGAACACTTTAAGGAACCGAAGCTAAAAAAGAACTCATAAAAGTTCGACAA
* *
586 GTTCGTAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTGCGTAAATAAGTTTATAATT
586 GTTCGTAAGTTCATCCAACAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTATAATT
** * * * * * * **
647 CAAAGATCAAAACATGTTTACAAAATCAAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGC
1 CAAAGGCCAAAACTTGTTTACAGAAT-GATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGC
* * * * * * * *
712 ATGGAATGTTTC-GAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTGAGGAACTG--GAT
65 ATGTAATG-TTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCT
* * * * * * **
774 TTGAAAAAGAACTAGTAAAAGTTTGACAAGATCGGAAGTACATCCAACGTCCAAGA-A-A-ATCA
129 AT-AAAAA-AACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAA-GAGCAAGAGAGACA-CA
* * ** * * * *
836 ATTCTCACGTAAAT-ATGTTTTTAATTCAAAGGCCAAAACATATTTACAAAATGACAAACTTTTT
190 ATTCACACTTAAATAAT-TTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTT
* ** * * * *
900 AGACCAAACGATGCGACTTCCCGAGCATTTAACGTTC-AGAAAATTGCTCG-AAGTATTGTATCG
254 ACACCAAACGATGCGACTTCCCGAGCATGGAACGCTCGA-AAAATTACTCGAAAG-AATGGATCG
* * *
963 GCTTG-ACTAATTTATGGAACCGAAGATAT-AAAAGAACTCA-TAAAAGTTCGACAAGTTTAGAA
317 GCTTGAAC-AATTTAAGGAACCG--GATATAAAAAGAACT-AGCAAAAGTTCGACAAGTTCAGAA
* *
1025 GTTCATCCAAGAAT-CGAGAGAGAAACAATTCTCACGTAAATAAGTTTATAA-TCAA-AGAAGAA
378 GTTCATCC-ACAATCCAAGAGAGAAACAATTCTCACGTAAATAAGTTTATAATTCAATAGAA-AA
* * * * * ** *
1087 AACATGTTTACAAAATGATAAACTTTTTACACCAAATGATGTGATTTCCCTCGCATGGAATGTTT
441 AACATGTTTACAAAATCACAAACCTATTACACCAAATGATGTGACTTCCCGAGCATGGAATGTTC
* * * *
1152 TGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAGCCTG-ATCTAAAAAAGAACT
506 GGAAAATTACTCGAAGGAATGGATCATCTTGAACACTTTAAGGAACC-GAAGCTAAAAAAGAACT
* * * * * * *
1216 CATAAAAGTTTGACAATTTTGTATGTTCGTCCAACAACTAAGAGAGAAATAATT-TTCACGTAAA
570 CATAAAAGTTCGACAAGTTCGTAAGTTCATCCAACAACCAAGAGAGAAACAATTCTT-ACGTAAA
*
1280 TAAGTTTTTAATT
634 TAAGTTTATAATT
*
1293 CAAAGGCCAAAACTTATTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
1 CAAAGGCCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
1358 TGTAATGTTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTAT
66 TGTAATGTTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTAT
* *
1423 AAAAAAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAGCAAGAGAGACACATTTCAC
131 AAAAAAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAGCAAGAGAGACACAATTCAC
*
1488 ACTTAAATAATTTTTTAATTCAAAGATTAAAACTTGTTTACAAAATGAA
196 ACTTAAATAATTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAA
Statistics
Matches: 721, Mismatches: 145, Indels: 48
0.79 0.16 0.05
Matches are distributed among these distances:
644 9 0.01
645 128 0.18
646 385 0.53
647 183 0.25
648 16 0.02
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (646 bp):
CAAAGGCCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCA
TGTAATGTTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTAT
AAAAAAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAGCAAGAGAGACACAATTCAC
ACTTAAATAATTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTACACCAA
ACGATGCGACTTCCCGAGCATGGAACGCTCGAAAAATTACTCGAAAGAATGGATCGGCTTGAACA
ATTTAAGGAACCGGATATAAAAAGAACTAGCAAAAGTTCGACAAGTTCAGAAGTTCATCCACAAT
CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTATAATTCAATAGAAAAAACATGTTTACAAAA
TCACAAACCTATTACACCAAATGATGTGACTTCCCGAGCATGGAATGTTCGGAAAATTACTCGAA
GGAATGGATCATCTTGAACACTTTAAGGAACCGAAGCTAAAAAAGAACTCATAAAAGTTCGACAA
GTTCGTAAGTTCATCCAACAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTATAATT
Done.