Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011421.1 Kokia drynarioides strain JFW-HI SEQ_126405, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1385
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37


Found at i:431 original size:23 final size:22

Alignment explanation


    Indices: 372--522  Score: 107
    Period size: 23  Copynumber: 6.8  Consensus size: 22

        362 AAGAATACCG

                *      *         *
        372 AAGTACTAAACTGAGAGCACAT
          1 AAGTGCTAAACAGAGAGCACAC

                      *              
        394 AAGTGCTGGGCAACAGAGAGCACAC
          1 AAGTGCT---AAACAGAGAGCACAC

                              *    
        419 AATGTGCTAAACAGAGAGTACAC
          1 AA-GTGCTAAACAGAGAGCACAC

               *         *        
        442 AA-AG-T--AC--TGAGCACAC
          1 AAGTGCTAAACAGAGAGCACAC

                      *            
        458 AAAGTGCTAATCAGAGAGCACAC
          1 -AAGTGCTAAACAGAGAGCACAC

                      *            
        481 ACAGTGCTAATCAGAGAGCACAC
          1 A-AGTGCTAAACAGAGAGCACAC

                      *        
        504 GAAGTGCTAATCAGAGAGC
          1 -AAGTGCTAAACAGAGAGC

        523 GCGCTAGTGT


Statistics
Matches: 104,  Mismatches: 12, Indels: 25
        0.74            0.09        0.18

Matches are distributed among these distances:
  16    7  0.07
  17    2  0.02
  18    3  0.03
  19    1  0.01
  20    1  0.01
  21    2  0.02
  22    7  0.07
  23   61  0.59
  24    1  0.01
  25   14  0.13
  26    5  0.05

ACGTcount: A:0.41, C:0.21, G:0.24, T:0.14


Consensus pattern (22 bp):   
AAGTGCTAAACAGAGAGCACAC

Found at i:623 original size:24 final size:26

Alignment explanation


    Indices: 585--632  Score: 66
    Period size: 24  Copynumber: 1.9  Consensus size: 26

        575 TCTACATGGG

                                       
        585 CATAATCTCTCATAT-TCATCATTTCT
          1 CATAATCTCTCATATATCA-CATTTCT

                                    
        611 CATAAT-T-TCATATATCACATTT
          1 CATAATCTCTCATATATCACATTT

        633 ACATTTCTCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  24   11  0.52
  25    4  0.19
  26    6  0.29

ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46


Consensus pattern (26 bp):   
CATAATCTCTCATATATCACATTTCT
Done.