Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011426.1 Kokia drynarioides strain JFW-HI SEQ_126410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 550552
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Warning! 325 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:568 original size:14 final size:13
Alignment explanation
Indices: 520--569 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
510 TTAATTAAAA
*
520 AAAGTCCCACATAC
1 AAAGT-CCAAATAC
*
534 AAAGCCCAAATTAC
1 AAAGTCCAAA-TAC
548 AAAGTCCAAATAC
1 AAAGTCCAAATAC
561 AAATGTCCA
1 AAA-GTCCA
570 TTTTAACAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 10 0.32
14 21 0.68
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (13 bp):
AAAGTCCAAATAC
Found at i:751 original size:22 final size:23
Alignment explanation
Indices: 704--751 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
694 ATCAGCAGCT
* *
704 CACCAGCCCCTCTGCACCAGCGC
1 CACCAGCCCCTCTGCACCAACAC
727 CACCA-CCCCTCTGCACCAACAC
1 CACCAGCCCCTCTGCACCAACAC
749 CAC
1 CAC
752 TGTAAACCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.23, C:0.58, G:0.10, T:0.08
Consensus pattern (23 bp):
CACCAGCCCCTCTGCACCAACAC
Found at i:1125 original size:3 final size:3
Alignment explanation
Indices: 1117--1199 Score: 166
Period size: 3 Copynumber: 27.7 Consensus size: 3
1107 GTATTAAATG
1117 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1165 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1200 CAAAAAGGGG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 80 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:2264 original size:30 final size:29
Alignment explanation
Indices: 2229--2579 Score: 230
Period size: 30 Copynumber: 12.0 Consensus size: 29
2219 AAAAGGTCAT
* *
2229 TAAACTCTCCGAAAATTATATTTTGA-CCC
1 TAAACTTTCC-AAAATTACATTTTGACCCC
*
2258 TCAAACTTTCTAAAAATTACATTTTGACCCC
1 T-AAACTTTC-CAAAATTACATTTTGACCCC
*
2289 TAAACTTTCCAAAATTACCATTTT-ACCCT
1 TAAACTTTCCAAAATTA-CATTTTGACCCC
*
2318 TAAA-TGTCCAAAATTACATTTTTGACCCC
1 TAAACTTTCCAAAATTACA-TTTTGACCCC
* *
2347 TAAACTTTCCAAAAATTACATTTTAACCTC
1 TAAACTTTCC-AAAATTACATTTTGACCCC
* *
2377 TAAA-TTTCCAAAAATTCCATTTTTGA-CCT
1 TAAACTTTCC-AAAATTACA-TTTTGACCCC
* *
2406 TAAACCTTCCAAAAATTACCATATT-ACCCC
1 TAAACTTTCC-AAAATTA-CATTTTGACCCC
* * *
2436 CATA-TGTCCAATAATTACATTTTTGACCCC
1 TAAACTTTCCAA-AATTACA-TTTTGACCCC
2466 T-AACTTTCCAAGAATTACCATTTT-A-CCC
1 TAAACTTTCCAA-AATTA-CATTTTGACCCC
* * *
2494 TCGAA-TGTCCAAAAATTACATTTTTGA-CCT
1 T-AAACTTTCC-AAAATTACA-TTTTGACCCC
* *
2524 TGAACTTTCAAAAATTACCATTTT-ACCCC
1 TAAACTTTCCAAAATTA-CATTTTGACCCC
*
2553 T-AACATTT-AAAAATTACCATTTT-ACCC
1 TAAAC-TTTCCAAAATTA-CATTTTGACCC
2580 TTTAACCTCT
Statistics
Matches: 264, Mismatches: 32, Indels: 53
0.76 0.09 0.15
Matches are distributed among these distances:
27 2 0.01
28 48 0.18
29 90 0.34
30 107 0.41
31 17 0.06
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (29 bp):
TAAACTTTCCAAAATTACATTTTGACCCC
Found at i:2410 original size:59 final size:61
Alignment explanation
Indices: 2269--2548 Score: 348
Period size: 59 Copynumber: 4.8 Consensus size: 61
2259 CAAACTTTCT
*
2269 AAAAATTACA-TTTTGACCCCTAAACTTTCC-AAAATTACCATTTTACCCT-TAAATGTCC
1 AAAAATTACATTTTTGACCCCTAAACTTTCCAAAAATTACCATTTTAACCTCTAAATGTCC
*
2327 -AAAATTACATTTTTGACCCCTAAACTTTCCAAAAATTA-CATTTTAACCTCTAAATTTCC
1 AAAAATTACATTTTTGACCCCTAAACTTTCCAAAAATTACCATTTTAACCTCTAAATGTCC
* * * * * * *
2386 AAAAATTCCATTTTTGA-CCTTAAACCTTCCAAAAATTACCATATT-ACCCCCATATGTCC
1 AAAAATTACATTTTTGACCCCTAAACTTTCCAAAAATTACCATTTTAACCTCTAAATGTCC
* * * *
2445 AATAATTACATTTTTGACCCCT-AACTTTCCAAGAATTACCATTTTACCCTC-GAATGTCC
1 AAAAATTACATTTTTGACCCCTAAACTTTCCAAAAATTACCATTTTAACCTCTAAATGTCC
* *
2504 AAAAATTACATTTTTGA-CCTTGAACTTT-CAAAAATTACCATTTTA
1 AAAAATTACATTTTTGACCCCTAAACTTTCCAAAAATTACCATTTTA
2549 CCCCTAACAT
Statistics
Matches: 191, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
57 9 0.05
58 49 0.26
59 107 0.56
60 26 0.14
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.36
Consensus pattern (61 bp):
AAAAATTACATTTTTGACCCCTAAACTTTCCAAAAATTACCATTTTAACCTCTAAATGTCC
Found at i:2443 original size:118 final size:119
Alignment explanation
Indices: 2229--2552 Score: 401
Period size: 118 Copynumber: 2.7 Consensus size: 119
2219 AAAAGGTCAT
* * * * * *
2229 TAAACTCTCCGAAAATTATATTTTGACC-CTCAAACTTTCTAAAAATTACA-TTTTGACCCCTAA
1 TAAACTTTCCAAAAATTACATTTTAACCTCT-AAA-TTTCCAAAAATTACATTTTTGA-CCTTAA
* **
2292 ACTTTCC-AAAATTACCATTTTACCCTTAAATGTCCAA-AATTACATTTTTGACCCC
63 ACCTTCCAAAAATTACCATTTTACCCCCAAATGTCCAATAATTACATTTTTGACCCC
*
2347 TAAACTTTCCAAAAATTACATTTTAACCTCTAAATTTCCAAAAATTCCATTTTTGACCTTAAACC
1 TAAACTTTCCAAAAATTACATTTTAACCTCTAAATTTCCAAAAATTACATTTTTGACCTTAAACC
* *
2412 TTCCAAAAATTACCATATTACCCCCATATGTCCAATAATTACATTTTTGACCCC
66 TTCCAAAAATTACCATTTTACCCCCAAATGTCCAATAATTACATTTTTGACCCC
* * * * *
2466 T-AACTTTCCAAGAATTACCATTTTACCCTC-GAATGTCCAAAAATTACATTTTTGACCTTGAA-
1 TAAACTTTCCAAAAATTA-CATTTTAACCTCTAAATTTCCAAAAATTACATTTTTGACCTTAAAC
*
2528 CTTTCAAAAATTACCATTTTACCCC
65 CTTCCAAAAATTACCATTTTACCCC
2553 TAACATTTAA
Statistics
Matches: 181, Mismatches: 20, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
117 47 0.26
118 102 0.56
119 32 0.18
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (119 bp):
TAAACTTTCCAAAAATTACATTTTAACCTCTAAATTTCCAAAAATTACATTTTTGACCTTAAACC
TTCCAAAAATTACCATTTTACCCCCAAATGTCCAATAATTACATTTTTGACCCC
Found at i:2585 original size:29 final size:28
Alignment explanation
Indices: 2478--2603 Score: 91
Period size: 29 Copynumber: 4.4 Consensus size: 28
2468 ACTTTCCAAG
** *
2478 AATTACCATTTTACCCTCGAA-TGTCCAAA
1 AATTACCATTTTACCCTTTAACT-T-TAAA
*
2507 AATTA-CATTTTTGA-CCTTGAACTTTCAAA
1 AATTACCA-TTTT-ACCCTTTAACTTT-AAA
*
2536 AATTACCATTTTACCC-CTAACATTTAAA
1 AATTACCATTTTACCCTTTAAC-TTTAAA
*
2564 AATTACCATTTTACCCTTTAACCTCTAAA
1 AATTACCATTTTACCCTTTAA-CTTTAAA
*
2593 AA-TATCATTTT
1 AATTACCATTTT
2604 TTGAACTCAA
Statistics
Matches: 81, Mismatches: 7, Indels: 19
0.76 0.07 0.18
Matches are distributed among these distances:
28 33 0.41
29 43 0.53
30 5 0.06
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (28 bp):
AATTACCATTTTACCCTTTAACTTTAAA
Found at i:2593 original size:28 final size:28
Alignment explanation
Indices: 2533--2603 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
2523 TTGAACTTTC
*
2533 AAAAATTACCATTTTACCCCTAACATTT
1 AAAAATTACCATTTTACCCCTAACATCT
* *
2561 AAAAATTACCATTTTACCCTTTAACCTCT
1 AAAAATTACCATTTTACCC-CTAACATCT
*
2590 AAAAA-TATCATTTT
1 AAAAATTACCATTTT
2604 TTGAACTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 27 0.71
29 11 0.29
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.38
Consensus pattern (28 bp):
AAAAATTACCATTTTACCCCTAACATCT
Found at i:4940 original size:18 final size:17
Alignment explanation
Indices: 4917--4952 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
4907 TTTCCAATAA
4917 TGTCCTTTTGAGTTTTTT
1 TGTCCTTTTGA-TTTTTT
*
4935 TGTCCTTTTTATTTTTT
1 TGTCCTTTTGATTTTTT
4952 T
1 T
4953 AAGACAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.06, C:0.11, G:0.11, T:0.72
Consensus pattern (17 bp):
TGTCCTTTTGATTTTTT
Found at i:17053 original size:1 final size:1
Alignment explanation
Indices: 17047--17079 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
17037 GCATCAAGAC
17047 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
17080 NNNNNNNNNN
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:19384 original size:17 final size:17
Alignment explanation
Indices: 19362--19394 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
19352 AACACCCATC
19362 CTTCTTTTCTTTTTCTT
1 CTTCTTTTCTTTTTCTT
*
19379 CTTCTTTTTTTTTTCT
1 CTTCTTTTCTTTTTCT
19395 CTCTCCAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTCTTTTCTTTTTCTT
Found at i:22786 original size:19 final size:19
Alignment explanation
Indices: 22762--22802 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
22752 CTACTAAGGA
*
22762 AATAATATCTCTTAATTAG
1 AATAATATCTCCTAATTAG
22781 AATAATATCTCCTAATTAG
1 AATAATATCTCCTAATTAG
22800 AAT
1 AAT
22803 CTCTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (19 bp):
AATAATATCTCCTAATTAG
Found at i:34490 original size:21 final size:21
Alignment explanation
Indices: 34464--34503 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
34454 TAATGACACA
*
34464 TCAGTATTTTCATCTTAAATT
1 TCAGTATTTTCATCATAAATT
*
34485 TCAGTATTTTTATCATAAA
1 TCAGTATTTTCATCATAAA
34504 AAATCAAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.50
Consensus pattern (21 bp):
TCAGTATTTTCATCATAAATT
Found at i:35813 original size:7 final size:7
Alignment explanation
Indices: 35801--35832 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
35791 TTAGGTCTTG
35801 TTTTTTC
1 TTTTTTC
35808 -TTTTT-
1 TTTTTTC
35813 TTTTTTC
1 TTTTTTC
35820 TTTTTTC
1 TTTTTTC
35827 TTTTTT
1 TTTTTT
35833 TGGTTTCTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 10 0.43
7 13 0.57
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (7 bp):
TTTTTTC
Found at i:35818 original size:12 final size:12
Alignment explanation
Indices: 35801--35831 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
35791 TTAGGTCTTG
35801 TTTTTTCTTTTT
1 TTTTTTCTTTTT
35813 TTTTTTCTTTTT
1 TTTTTTCTTTTT
35825 TCTTTTT
1 T-TTTTT
35832 TTGGTTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:35839 original size:20 final size:19
Alignment explanation
Indices: 35801--35840 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
35791 TTAGGTCTTG
*
35801 TTTTTTCTTTTTTTTTTTC
1 TTTTTTCTTTTTTTGTTTC
35820 TTTTTTCTTTTTTTGGTTTC
1 TTTTTTCTTTTTTT-GTTTC
35840 T
1 T
35841 CAATATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (19 bp):
TTTTTTCTTTTTTTGTTTC
Found at i:36917 original size:27 final size:27
Alignment explanation
Indices: 36869--36922 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
36859 AGAGAGACTA
* * *
36869 AAAAATGATCAAATTAATTTGA-ACAC
1 AAAAATAATCAAAATAAGTTGAGACAC
36895 AAAAATAATCAAAATATAGTTGAGACAC
1 AAAAATAATCAAAATA-AGTTGAGACAC
36923 TAAATCCACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 14 0.61
27 5 0.22
28 4 0.17
ACGTcount: A:0.56, C:0.11, G:0.09, T:0.24
Consensus pattern (27 bp):
AAAAATAATCAAAATAAGTTGAGACAC
Found at i:38607 original size:24 final size:24
Alignment explanation
Indices: 38579--38642 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
38569 CCAAACAATC
*
38579 AAAATAACAACCAAAATAGCAACA
1 AAAATAACAACAAAAATAGCAACA
* *
38603 AAAATGACAACAAAAATAGTAACA
1 AAAATAACAACAAAAATAGCAACA
*
38627 AAAACAACAACAAAAA
1 AAAATAACAACAAAAA
38643 CATCACCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.70, C:0.17, G:0.05, T:0.08
Consensus pattern (24 bp):
AAAATAACAACAAAAATAGCAACA
Found at i:38644 original size:12 final size:12
Alignment explanation
Indices: 38579--38642 Score: 74
Period size: 12 Copynumber: 5.3 Consensus size: 12
38569 CCAAACAATC
*
38579 AAAATAACAACC
1 AAAATAACAACA
*
38591 AAAATAGCAACA
1 AAAATAACAACA
*
38603 AAAATGACAACA
1 AAAATAACAACA
**
38615 AAAATAGTAACA
1 AAAATAACAACA
*
38627 AAAACAACAACA
1 AAAATAACAACA
38639 AAAA
1 AAAA
38643 CATCACCAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.70, C:0.17, G:0.05, T:0.08
Consensus pattern (12 bp):
AAAATAACAACA
Found at i:38724 original size:45 final size:43
Alignment explanation
Indices: 38673--38760 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
38663 AAAAAGCACC
*
38673 AAAATAGCAATTAAAACAATAAAAAAAACAACACTAAAAAAACAA
1 AAAATAGCAATCAAAACAAT--AAAAAACAACACTAAAAAAACAA
* * * *
38718 AAAATAGTAATCAAAACAGTAAAAAAGAACACTAAAAGAACAA
1 AAAATAGCAATCAAAACAATAAAAAACAACACTAAAAAAACAA
38761 TATAATTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
43 21 0.55
45 17 0.45
ACGTcount: A:0.70, C:0.12, G:0.06, T:0.11
Consensus pattern (43 bp):
AAAATAGCAATCAAAACAATAAAAAACAACACTAAAAAAACAA
Found at i:42135 original size:25 final size:25
Alignment explanation
Indices: 42085--42135 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
42075 TGGAATACCC
* **
42085 ATATTCTCTCCTTATCTCTGTTTTG
1 ATATTCTCTCCTTAGCTCTGAGTTG
42110 ATATTCTCAT-CTTAGCTCTGAGTTG
1 ATATTCTC-TCCTTAGCTCTGAGTTG
42135 A
1 A
42136 AACCATAGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.18, C:0.22, G:0.12, T:0.49
Consensus pattern (25 bp):
ATATTCTCTCCTTAGCTCTGAGTTG
Found at i:44228 original size:2 final size:2
Alignment explanation
Indices: 44221--44250 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
44211 TATAAATTTG
44221 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44251 TTAAATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44859 original size:32 final size:32
Alignment explanation
Indices: 44784--44860 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
44774 ATTTAAGAAG
* ** *
44784 GTTTGTGCAAAAATATTTTACTCAAAAAATGG
1 GTTTGAGCAAAAATATTAAACTCAAAAAATGA
*
44816 GCTT-AGACAAAAATATTAAACTCAAAAAATGA
1 GTTTGAG-CAAAAATATTAAACTCAAAAAATGA
44848 GTTTGAGCAAAAA
1 GTTTGAGCAAAAA
44861 AATAAGGCTC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
31 1 0.03
32 34 0.92
33 2 0.05
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.27
Consensus pattern (32 bp):
GTTTGAGCAAAAATATTAAACTCAAAAAATGA
Found at i:44968 original size:5 final size:5
Alignment explanation
Indices: 44954--44984 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
44944 TGTTTTAAGT
*
44954 TTATA ATATA TTATA TTATA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA T
44985 AATTTAGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TTATA
Found at i:50464 original size:25 final size:25
Alignment explanation
Indices: 50436--50504 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 25
50426 AATTTAATTT
50436 AATTATTTAAAATCATAAAAATATA
1 AATTATTTAAAATCATAAAAATATA
*
50461 AATTA-TTAAAATAAT-AAAAT-TA
1 AATTATTTAAAATCATAAAAATATA
* **
50483 TATT-TTTATTATCATAAAAATA
1 AATTATTTAAAATCATAAAAATA
50505 CATAATTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
22 12 0.33
23 10 0.28
24 9 0.25
25 5 0.14
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (25 bp):
AATTATTTAAAATCATAAAAATATA
Found at i:50472 original size:24 final size:25
Alignment explanation
Indices: 50436--50484 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
50426 AATTTAATTT
*
50436 AATTATTTAAAATCATAAAAATATA
1 AATTATTTAAAATAATAAAAATATA
*
50461 AATTA-TTAAAATAATAAAATTATA
1 AATTATTTAAAATAATAAAAATATA
50485 TTTTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (25 bp):
AATTATTTAAAATAATAAAAATATA
Found at i:57075 original size:2 final size:2
Alignment explanation
Indices: 57068--57092 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
57058 TGCTCTACGG
57068 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
57093 TCTAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:57526 original size:25 final size:23
Alignment explanation
Indices: 57481--57528 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
57471 AATATGTTCA
**
57481 TTATAATATAAAATATTTAATGT
1 TTATAATATAAAATACATAATGT
57504 TTATAATATATAAATTACATAATGT
1 TTATAATATA-AAA-TACATAATGT
57529 ATAAAAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 10 0.48
24 3 0.14
25 8 0.38
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (23 bp):
TTATAATATAAAATACATAATGT
Found at i:61856 original size:6 final size:6
Alignment explanation
Indices: 61826--61855 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
61816 TTACACCAAA
*
61826 GAAGGG GAAGGG GAAGGG GAAGGG CAAGGG
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG
61856 CCTATATACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.33, C:0.03, G:0.63, T:0.00
Consensus pattern (6 bp):
GAAGGG
Found at i:67444 original size:11 final size:11
Alignment explanation
Indices: 67410--67446 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
67400 GTATAACAAG
67410 GGAAGAGGTAA
1 GGAAGAGGTAA
* *
67421 GAAAGAGATAA
1 GGAAGAGGTAA
67432 GGAAGAGGTAA
1 GGAAGAGGTAA
67443 GGAA
1 GGAA
67447 CAATATGAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.41, T:0.08
Consensus pattern (11 bp):
GGAAGAGGTAA
Found at i:82302 original size:21 final size:21
Alignment explanation
Indices: 82278--82340 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
82268 GACTGTAAAG
*
82278 AGTTGACCGTTGACCATTGAC
1 AGTTGACTGTTGACCATTGAC
* * *
82299 AGTTGATTGTTAACCATTGAT
1 AGTTGACTGTTGACCATTGAC
*
82320 AGTTGACTGTTGACCGTTGAC
1 AGTTGACTGTTGACCATTGAC
82341 TTTTTGGGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (21 bp):
AGTTGACTGTTGACCATTGAC
Found at i:82353 original size:20 final size:20
Alignment explanation
Indices: 82328--82365 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
82318 ATAGTTGACT
*
82328 GTTGACCGTTGACTTTTTGG
1 GTTGACCATTGACTTTTTGG
82348 GTTGACCATTGACTTTTT
1 GTTGACCATTGACTTTTT
82366 TCGAAAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.16, G:0.24, T:0.47
Consensus pattern (20 bp):
GTTGACCATTGACTTTTTGG
Found at i:88033 original size:464 final size:464
Alignment explanation
Indices: 87165--88088 Score: 1735
Period size: 464 Copynumber: 2.0 Consensus size: 464
87155 TTCTATCAAG
*
87165 GGTATCAGAGCTATCGTTCTTATGGTCGGAGATGGTGTCACCACAAGGTTACAAAAGGAGGTTAC
1 GGTATCAGAGCTATCGTTCTTATGGTCGGAGATAGTGTCACCACAAGGTTACAAAAGGAGGTTAC
87230 CAACCTGCAACAAGAATTTCAAAAAATGCAGGGTGAGTTATCTCAGTTGGACATTAAGATTGACA
66 CAACCTGCAACAAGAATTTCAAAAAATGCAGGGTGAGTTATCTCAGTTGGACATTAAGATTGACA
*
87295 CGAGGTTGGAGACGAGGTTGCAAAATGATTTCAAGGGAGAAATCAGATTTGAACTTAACACGTTA
131 CGAGGTTGGAGACGAGGTTGCAAAATGATTTCAAGGGAGAAATCAAATTTGAACTTAACACGTTA
87360 AGGTCTAAGCTCCACGGCCTCTTTAAGCAATACTGTGGCAGCCCCACTGTCCCTAGTAGTGCTAT
196 AGGTCTAAGCTCCACGGCCTCTTTAAGCAATACTGTGGCAGCCCCACTGTCCCTAGTAGTGCTAT
87425 TGTGCAAGATAGGGGAAAAGGAGTTATGGGAAGCAGACCTTAAGGTTTCTCTCTAATAGGACCAA
261 TGTGCAAGATAGGGGAAAAGGAGTTATGGGAAGCAGACCTTAAGGTTTCTCTCTAATAGGACCAA
* *
87490 TCGAAATTTCACAACTGTTCGTCATCGTGAGCCCCCAACAACTGCAGAACCAGGATAGAGTGGTG
326 TCGAAATTTCACAACTGTCCGTCATCGTGAGCCCCCAACAACTGCAAAACCAGGATAGAGTGGTG
*
87555 AGATGGGGTTGCCCTCGTTTTGATGGGAATGATTTTAGAACTTGGTGGCCAAAACTTGAGCAATA
391 AGATGGGGTTGCCCTCGTTTTGATGGGAATGATTTTAGAACTTGGTGGCCAAAACTCGAGCAATA
87620 TTTTAGAAC
456 TTTTAGAAC
87629 GGTATCAGAGCTA-CTGTTCTTATGGTCGGAGATAGTGTCACCACAAGGTTACAAAAGGAGGTTA
1 GGTATCAGAGCTATC-GTTCTTATGGTCGGAGATAGTGTCACCACAAGGTTACAAAAGGAGGTTA
87693 CCAACCTGCAACAAGAATTTCAAAAAATGCAGGGTGAGTTATCTCAGTTGGACATTAAGATTGAC
65 CCAACCTGCAACAAGAATTTCAAAAAATGCAGGGTGAGTTATCTCAGTTGGACATTAAGATTGAC
87758 ACGAGGTTGGAGACGAGGTTGCAAAATGATTTCAAGGGAGAAATCAAATTTGAACTTAACACGTT
130 ACGAGGTTGGAGACGAGGTTGCAAAATGATTTCAAGGGAGAAATCAAATTTGAACTTAACACGTT
* *
87823 AAGGTCTAAGCTCCCCGGCCTCTTTAAGCAATACTGTGGCAGCCCTACTGTCCCTAGTAGTGCTA
195 AAGGTCTAAGCTCCACGGCCTCTTTAAGCAATACTGTGGCAGCCCCACTGTCCCTAGTAGTGCTA
87888 TTGTGCAAGATAGGGGAAAAGGAGTTATGGGAAGCAGAGCC-TAAGGTTTCTCTCTAATAGGACC
260 TTGTGCAAGATAGGGGAAAAGGAGTTATGGGAAGCAGA-CCTTAAGGTTTCTCTCTAATAGGACC
* *
87952 AATCGAAATTTCACAACTGTCCGTCATCGTGAGCCCTCAGCAACTGCAAAACCAGGATAGAGTGG
324 AATCGAAATTTCACAACTGTCCGTCATCGTGAGCCCCCAACAACTGCAAAACCAGGATAGAGTGG
88017 TGAGATGGGGTTGCCCTCGTTTTGATGGGAATGATTTTAGAACTTGGTGGCCAAAACTCGAGCAA
389 TGAGATGGGGTTGCCCTCGTTTTGATGGGAATGATTTTAGAACTTGGTGGCCAAAACTCGAGCAA
88082 TATTTTA
454 TATTTTA
88089 AGGCAGAGTG
Statistics
Matches: 449, Mismatches: 9, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
463 1 0.00
464 446 0.99
465 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (464 bp):
GGTATCAGAGCTATCGTTCTTATGGTCGGAGATAGTGTCACCACAAGGTTACAAAAGGAGGTTAC
CAACCTGCAACAAGAATTTCAAAAAATGCAGGGTGAGTTATCTCAGTTGGACATTAAGATTGACA
CGAGGTTGGAGACGAGGTTGCAAAATGATTTCAAGGGAGAAATCAAATTTGAACTTAACACGTTA
AGGTCTAAGCTCCACGGCCTCTTTAAGCAATACTGTGGCAGCCCCACTGTCCCTAGTAGTGCTAT
TGTGCAAGATAGGGGAAAAGGAGTTATGGGAAGCAGACCTTAAGGTTTCTCTCTAATAGGACCAA
TCGAAATTTCACAACTGTCCGTCATCGTGAGCCCCCAACAACTGCAAAACCAGGATAGAGTGGTG
AGATGGGGTTGCCCTCGTTTTGATGGGAATGATTTTAGAACTTGGTGGCCAAAACTCGAGCAATA
TTTTAGAAC
Found at i:98788 original size:23 final size:23
Alignment explanation
Indices: 98762--98814 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
98752 CGCAATAGAA
* *
98762 TTAATTAATTCTTCAATATTAAT
1 TTAATTAACTATTCAATATTAAT
**
98785 TTAATTAACTATTCAATATTTTT
1 TTAATTAACTATTCAATATTAAT
98808 TTAATTA
1 TTAATTA
98815 CAACTTGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.55
Consensus pattern (23 bp):
TTAATTAACTATTCAATATTAAT
Found at i:102345 original size:28 final size:23
Alignment explanation
Indices: 102293--102339 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
102283 TTTTTTTTTT
102293 TTACTAAAAGAAATTTCAATTAA
1 TTACTAAAAGAAATTTCAATTAA
102316 TTACTAAAAGAAATTTCAATTAA
1 TTACTAAAAGAAATTTCAATTAA
102339 T
1 T
102340 GTAATTTGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (23 bp):
TTACTAAAAGAAATTTCAATTAA
Found at i:117806 original size:33 final size:33
Alignment explanation
Indices: 117763--117825 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
117753 GGGGGGAATG
*
117763 ATATGTCATCTTTGTAGCTCATCTTTAAGTCTT
1 ATATGCCATCTTTGTAGCTCATCTTTAAGTCTT
117796 ATATGCCATCTTTGTAGCTCATCTTTAAGT
1 ATATGCCATCTTTGTAGCTCATCTTTAAGT
117826 TTTTTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (33 bp):
ATATGCCATCTTTGTAGCTCATCTTTAAGTCTT
Found at i:118444 original size:2 final size:2
Alignment explanation
Indices: 118431--118462 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
118421 GCAAAAGAGA
*
118431 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
118463 TCCCTTCGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:129468 original size:19 final size:19
Alignment explanation
Indices: 129446--129500 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 19
129436 ATGTACACTG
129446 TTAAATTACATTATT-ACCC
1 TTAAATTA-ATTATTGACCC
*
129465 TTAATTTATATTATTGACCC
1 TTAAATTA-ATTATTGACCC
129485 -TAAACTTAATTATTGA
1 TTAAA-TTAATTATTGA
129501 GTATAGTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 24 0.77
20 7 0.23
ACGTcount: A:0.36, C:0.15, G:0.04, T:0.45
Consensus pattern (19 bp):
TTAAATTAATTATTGACCC
Found at i:130662 original size:18 final size:18
Alignment explanation
Indices: 130622--130673 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
130612 GTTTAAAATG
*
130622 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAATTTATT
*
130640 CAATTAATTAAATTTATT
1 TAATTAATTAAATTTATT
130658 TAATTAA--AAATTTATT
1 TAATTAATTAAATTTATT
130674 CTCGTCCCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 9 0.30
17 7 0.23
18 14 0.47
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATTAATTAAATTTATT
Found at i:130814 original size:20 final size:20
Alignment explanation
Indices: 130779--130816 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
130769 TGACCACTTC
130779 GTAACAAAACGATAACATAA
1 GTAACAAAACGATAACATAA
130799 GTAACTAAAACG-TAACAT
1 GTAAC-AAAACGATAACAT
130817 TTCAAACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.55, C:0.16, G:0.11, T:0.18
Consensus pattern (20 bp):
GTAACAAAACGATAACATAA
Found at i:137387 original size:20 final size:22
Alignment explanation
Indices: 137359--137399 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
137349 AAAATCTCAA
137359 ACAGTAAATAAAAAAG-CAAAC
1 ACAGTAAATAAAAAAGACAAAC
*
137380 ACAG-AAATTAAAAAGACAAA
1 ACAGTAAATAAAAAAGACAAA
137400 GGGACCAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.68, C:0.12, G:0.10, T:0.10
Consensus pattern (22 bp):
ACAGTAAATAAAAAAGACAAAC
Found at i:146842 original size:15 final size:15
Alignment explanation
Indices: 146822--146860 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
146812 GCACATCAAA
*
146822 CAAGAATTAATATAT
1 CAAGAATTAATAAAT
*
146837 CAAGAA-TACTAAAT
1 CAAGAATTAATAAAT
146851 CAAGAATTAA
1 CAAGAATTAA
146861 GCACACCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.26
Consensus pattern (15 bp):
CAAGAATTAATAAAT
Found at i:147267 original size:25 final size:23
Alignment explanation
Indices: 147239--147284 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
147229 GTTTGATCCA
147239 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
147264 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
147285 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:147328 original size:61 final size:61
Alignment explanation
Indices: 147233--147374 Score: 266
Period size: 61 Copynumber: 2.3 Consensus size: 61
147223 ACTCTAGTTT
147233 GATCCAAATTAAATTCTAAAAAGATAATTAGAATTAAATCTAAACAATAATTCCCTAATTG
1 GATCCAAATTAAATTCTAAAAAGATAATTAGAATTAAATCTAAACAATAATTCCCTAATTG
*
147294 GATCCAAATTAAATTCTAAAAAGATAATTAGAATTAAATCTAAACAATAATTCTCTAATTG
1 GATCCAAATTAAATTCTAAAAAGATAATTAGAATTAAATCTAAACAATAATTCCCTAATTG
*
147355 GATCCAAATTAAACTCTAAA
1 GATCCAAATTAAATTCTAAA
147375 TTATAAAACC
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 79 1.00
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.31
Consensus pattern (61 bp):
GATCCAAATTAAATTCTAAAAAGATAATTAGAATTAAATCTAAACAATAATTCCCTAATTG
Found at i:147329 original size:25 final size:23
Alignment explanation
Indices: 147300--147345 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
147290 ATTGGATCCA
147300 AATTAAATTCTAAAAAGATAATTAG
1 AATTAAA-TCTAAAAA-ATAATTAG
*
147325 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
147346 CTCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTAG
Found at i:150025 original size:42 final size:42
Alignment explanation
Indices: 149959--150044 Score: 129
Period size: 42 Copynumber: 2.0 Consensus size: 42
149949 GTTAGACGTT
*
149959 TTGGTCGATACATTCAATGATTTAACCAGCTTGGTTTGGTTC
1 TTGGTCGATACATTCAATGATTTAACAAGCTTGGTTTGGTTC
* *
150001 TTGGTCGATACATTTGAA-GGTTTAACAAGCTTGGTTTGGTTC
1 TTGGTCGATACA-TTCAATGATTTAACAAGCTTGGTTTGGTTC
150043 TT
1 TT
150045 CTTGGTGGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 36 0.90
43 4 0.10
ACGTcount: A:0.21, C:0.14, G:0.23, T:0.42
Consensus pattern (42 bp):
TTGGTCGATACATTCAATGATTTAACAAGCTTGGTTTGGTTC
Found at i:162480 original size:6 final size:6
Alignment explanation
Indices: 162471--162552 Score: 59
Period size: 6 Copynumber: 14.3 Consensus size: 6
162461 GTCCAACAAG
* * *
162471 ATTTAA ATTT-A TTTTAA AATTAA ATTT-- ATTTAA GTTTAA ATTT-A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
* *
162515 CTTAAA ATTTAA ATTT-- ATTATAA ATTTAAA ATTTAA AT
1 ATTTAA ATTTAA ATTTAA ATT-TAA ATTT-AA ATTTAA AT
162553 CTATTTAAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
4 7 0.12
5 8 0.14
6 34 0.59
7 9 0.16
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (6 bp):
ATTTAA
Found at i:162514 original size:33 final size:34
Alignment explanation
Indices: 162471--162549 Score: 108
Period size: 33 Copynumber: 2.3 Consensus size: 34
162461 GTCCAACAAG
*
162471 ATTTAAATTTATTTTAAAA-TTAAATTTATT-TAA
1 ATTTAAATTTA-CTTAAAATTTAAATTTATTATAA
*
162504 GTTTAAATTTACTTAAAATTTAAATTTATTATAA
1 ATTTAAATTTACTTAAAATTTAAATTTATTATAA
162538 ATTTAAAATTTA
1 ATTT-AAATTTA
162550 AATCTATTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
32 6 0.15
33 21 0.52
34 6 0.15
35 7 0.17
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (34 bp):
ATTTAAATTTACTTAAAATTTAAATTTATTATAA
Found at i:162548 original size:24 final size:23
Alignment explanation
Indices: 162516--162562 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
162506 TTAAATTTAC
*
162516 TTAAAATTTAAATTTATTATAAAT
1 TTAAAATTTAAATCTATT-TAAAT
162540 TTAAAATTTAAATCTATTTAAAT
1 TTAAAATTTAAATCTATTTAAAT
162563 CAAGTCCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAAAATTTAAATCTATTTAAAT
Found at i:162561 original size:17 final size:17
Alignment explanation
Indices: 162471--162549 Score: 92
Period size: 17 Copynumber: 4.6 Consensus size: 17
162461 GTCCAACAAG
162471 ATTTAAATTTATTTTAAA
1 ATTTAAATTTA-TTTAAA
162489 A-TTAAATTTATTT-AA
1 ATTTAAATTTATTTAAA
* *
162504 GTTTAAATTTACTTAAA
1 ATTTAAATTTATTTAAA
162521 ATTTAAATTTA-TTATAA
1 ATTTAAATTTATTTA-AA
162538 ATTTAAAATTTA
1 ATTT-AAATTTA
162550 AATCTATTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
15 2 0.04
16 17 0.31
17 27 0.50
18 8 0.15
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (17 bp):
ATTTAAATTTATTTAAA
Found at i:164398 original size:29 final size:28
Alignment explanation
Indices: 164351--164582 Score: 184
Period size: 29 Copynumber: 8.0 Consensus size: 28
164341 GCCCTAAAGG
* * *
164351 ACCCCAAAATTTCTAAAAATTCTATTTTT
1 ACCCTAAAACTTC-AAAAATTCCATTTTT
*
164380 GACCCTAAAACTTCAAAAATTTCATTTTT
1 -ACCCTAAAACTTCAAAAATTCCATTTTT
* *
164409 ACCCTCAAACTTCCAAAAATGCCATTTTT
1 ACCCTAAAACTT-CAAAAATTCCATTTTT
*
164438 GACCCCAAAACTTCCAAAAATTCCATTTTT
1 -ACCCTAAAACTT-CAAAAATTCCATTTTT
* * * *
164468 ACCCTCAAACCTCCAAAATCTCCATTTTCG
1 ACCCTAAAACTTCAAAAAT-TCCATTTT-T
*
164498 A-CCTCGAAACTCTC-AAAATTCCATTTTT
1 ACCCT-AAAACT-TCAAAAATTCCATTTTT
* *
164526 ACCCCTAAATA-TTTAAAATTTCCATTTTT
1 A-CCCTAAA-ACTTCAAAAATTCCATTTTT
*
164555 ACCCCTAAATA-TTTAAAAATTCCATTTT
1 A-CCCTAAA-ACTTCAAAAATTCCATTTT
164583 AAACCTCTAT
Statistics
Matches: 170, Mismatches: 22, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
28 19 0.11
29 98 0.58
30 51 0.30
31 2 0.01
ACGTcount: A:0.35, C:0.27, G:0.02, T:0.36
Consensus pattern (28 bp):
ACCCTAAAACTTCAAAAATTCCATTTTT
Found at i:164477 original size:59 final size:59
Alignment explanation
Indices: 164365--164529 Score: 212
Period size: 58 Copynumber: 2.8 Consensus size: 59
164355 CAAAATTTCT
* * * *
164365 AAAAATTCTATTTTTGACCCTAAAACTT-CAAAAATTTCATTTTTACCCTCAAACTTCC
1 AAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTCCATTTTTACCCTCAAACCTCC
*
164423 AAAAATGCCATTTTTGACCCCAAAACTTCCAAAAATTCCATTTTTACCCTCAAACCTCC
1 AAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTCCATTTTTACCCTCAAACCTCC
* * *
164482 -AAAATCTCCATTTTCGACCTCGAAAC-TCTC-AAAATTCCATTTTTACCC
1 AAAAAT-TCCATTTTTGACCCCAAAACTTC-CAAAAATTCCATTTTTACCC
164530 CTAAATATTT
Statistics
Matches: 95, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
58 50 0.53
59 45 0.47
ACGTcount: A:0.35, C:0.29, G:0.03, T:0.33
Consensus pattern (59 bp):
AAAAATTCCATTTTTGACCCCAAAACTTCCAAAAATTCCATTTTTACCCTCAAACCTCC
Found at i:164486 original size:58 final size:60
Alignment explanation
Indices: 164374--164529 Score: 205
Period size: 59 Copynumber: 2.7 Consensus size: 60
164364 TAAAAATTCT
* * *
164374 ATTTTTGACCCTAAAACTT-CAAAAATTTCATTTTTACCCTCAAACTTCCAAAAAT-GCC
1 ATTTTTGACCCCAAAACTTCCAAAAATTCCATTTTTACCCTCAAACCTCCAAAAATCGCC
*
164432 ATTTTTGACCCCAAAACTTCCAAAAATTCCATTTTTACCCTCAAACCTCC-AAAATCTCC
1 ATTTTTGACCCCAAAACTTCCAAAAATTCCATTTTTACCCTCAAACCTCCAAAAATCGCC
* * *
164491 ATTTTCGACCTCGAAAC-TCTC-AAAATTCCATTTTTACCC
1 ATTTTTGACCCCAAAACTTC-CAAAAATTCCATTTTTACCC
164530 CTAAATATTT
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
58 43 0.49
59 45 0.51
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.33
Consensus pattern (60 bp):
ATTTTTGACCCCAAAACTTCCAAAAATTCCATTTTTACCCTCAAACCTCCAAAAATCGCC
Found at i:164751 original size:30 final size:29
Alignment explanation
Indices: 164706--164823 Score: 107
Period size: 30 Copynumber: 4.0 Consensus size: 29
164696 TGCCATAAAG
* * *
164706 GACCCCAAAATTTCCAAAAATTCTATTTTT
1 GACCCCGAAACTTCC-AAAATTCCATTTTT
*
164736 GACCCCGAAACTTCCAAAAATCCCATTTTT
1 GACCCCGAAACTTCC-AAAATTCCATTTTT
* *
164766 -ACCCTC-AAACCTCCAAAATCTCCATTTTC
1 GACCC-CGAAACTTCCAAAAT-TCCATTTTT
*
164795 GACCTCGAAAC-TCTCAAAATTCCATTTTT
1 GACCCCGAAACTTC-CAAAATTCCATTTTT
164824 ATCCCTAAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
28 5 0.07
29 29 0.39
30 40 0.54
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.31
Consensus pattern (29 bp):
GACCCCGAAACTTCCAAAATTCCATTTTT
Found at i:164851 original size:28 final size:28
Alignment explanation
Indices: 164810--164895 Score: 120
Period size: 29 Copynumber: 3.0 Consensus size: 28
164800 CGAAACTCTC
*
164810 AAAATTCCATTTTTATCCCTAAATATTT
1 AAAATTCCATTTTTACCCCTAAATATTT
164838 AAAATTTCCATTTTTACCCCTAAATATTT
1 AAAA-TTCCATTTTTACCCCTAAATATTT
*
164867 AAAAATTCCATTTTTAAACCCTAAA-ATTT
1 -AAAATTCCATTTTT-ACCCCTAAATATTT
164896 CCCAAAATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
28 4 0.08
29 37 0.70
30 12 0.23
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.43
Consensus pattern (28 bp):
AAAATTCCATTTTTACCCCTAAATATTT
Found at i:187223 original size:18 final size:18
Alignment explanation
Indices: 187200--187242 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
187190 GTTCAAGGTA
187200 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
187218 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
187236 TAATTAA
1 TAATTAA
187243 AAACTTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:201638 original size:30 final size:32
Alignment explanation
Indices: 201585--201643 Score: 95
Period size: 30 Copynumber: 1.9 Consensus size: 32
201575 TTTAAAGTAT
201585 AAAATTTCAAAACTAACATATCTAAATTTCTA
1 AAAATTTCAAAACTAACATATCTAAATTTCTA
*
201617 AAAATTT-AAAA-TAATATATCTAAATTT
1 AAAATTTCAAAACTAACATATCTAAATTT
201644 TGTAATTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 15 0.58
31 4 0.15
32 7 0.27
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (32 bp):
AAAATTTCAAAACTAACATATCTAAATTTCTA
Found at i:205812 original size:30 final size:31
Alignment explanation
Indices: 205760--205822 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
205750 AAATAAAAGT
*
205760 AAAATTGTATTTTATCTCTTTAAAAATAATA
1 AAAATTGTATTTAATCTCTTTAAAAATAATA
*
205791 AAAATT-TAATTTAATCT-TTTAAAAATTATA
1 AAAATTGT-ATTTAATCTCTTTAAAAATAATA
205821 AA
1 AA
205823 GATAAAATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 15 0.52
31 14 0.48
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (31 bp):
AAAATTGTATTTAATCTCTTTAAAAATAATA
Found at i:208323 original size:3 final size:3
Alignment explanation
Indices: 208317--208351 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
208307 CCTGCTGCTG
208317 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
208352 CACATATTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:208885 original size:41 final size:41
Alignment explanation
Indices: 208837--208915 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 41
208827 AGTTAAAATA
* * *
208837 GATTAAAAT-AATCTATTTATATTTTGAAGGTAGTAAAAGTG
1 GATTAAAATGAA-CTATTTACATTTAGAAGGTACTAAAAGTG
208878 GATTAAAATGAACTATTTACATTTAGAAGGTACTAAAA
1 GATTAAAATGAACTATTTACATTTAGAAGGTACTAAAA
208916 CAACAATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 32 0.94
42 2 0.06
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.35
Consensus pattern (41 bp):
GATTAAAATGAACTATTTACATTTAGAAGGTACTAAAAGTG
Found at i:209729 original size:22 final size:23
Alignment explanation
Indices: 209704--209796 Score: 77
Period size: 22 Copynumber: 4.2 Consensus size: 23
209694 CTTTAACATC
209704 TTTAAAAATAATAAAAATT-TAA
1 TTTAAAAATAATAAAAATTATAA
* ** *
209726 TTT--AATTTTTTAAAATTATAA
1 TTTAAAAATAATAAAAATTATAA
*
209747 TTTTAAAATAAT-AAAATTATAA
1 TTTAAAAATAATAAAAATTATAA
* ** *
209769 TTTTACTATTATAAAAATTATAA
1 TTTAAAAATAATAAAAATTATAA
209792 TTTAA
1 TTTAA
209797 TTCGAGCCCT
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
20 10 0.18
21 6 0.11
22 22 0.39
23 18 0.32
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (23 bp):
TTTAAAAATAATAAAAATTATAA
Found at i:209784 original size:74 final size:75
Alignment explanation
Indices: 209650--209791 Score: 182
Period size: 74 Copynumber: 1.9 Consensus size: 75
209640 ATAAATTTTT
* * *
209650 ATTTAAATTTTTTAAAATTTTAAATTAATAAAAATAAAATTATACTTTAACATCTTTAAAAATAA
1 ATTTAAATTTTTTAAAATTATAAATTAATAAAAATAAAATTATAATTTAACATCTATAAAAATAA
209715 TAAAAATTTA
66 TAAAAATTTA
* * *
209725 ATTT-AATTTTTTAAAATTATAATTTTAA-AATAATAAAATTATAATTTTACTAT-TATAAAAAT
1 ATTTAAATTTTTTAAAATTATAA-ATTAATAAAAATAAAATTATAATTTAAC-ATCTATAAAAAT
*
209787 TATAA
64 AATAA
209792 TTTAATTCGA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
74 48 0.83
75 10 0.17
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (75 bp):
ATTTAAATTTTTTAAAATTATAAATTAATAAAAATAAAATTATAATTTAACATCTATAAAAATAA
TAAAAATTTA
Found at i:209789 original size:23 final size:22
Alignment explanation
Indices: 209736--209794 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
209726 TTTAATTTTT
209736 TAAAATTATAATTTTAAAATAA
1 TAAAATTATAATTTTAAAATAA
** *
209758 TAAAATTATAATTTTACTATTA
1 TAAAATTATAATTTTAAAATAA
209780 TAAAAATTATAATTT
1 T-AAAATTATAATTT
209795 AATTCGAGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
TAAAATTATAATTTTAAAATAA
Found at i:214539 original size:2 final size:2
Alignment explanation
Indices: 214528--214564 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
214518 ATATGAGTTA
214528 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
214565 GTTTATATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:214607 original size:5 final size:5
Alignment explanation
Indices: 214597--214621 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
214587 TCCTGAGAAA
214597 AAAAC AAAAC AAAAC AAAAC AAAAC
1 AAAAC AAAAC AAAAC AAAAC AAAAC
214622 TAGCAGTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:218560 original size:20 final size:21
Alignment explanation
Indices: 218514--218560 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
218504 TTAGGGCTTG
*
218514 GGTTTTGGGTTTGAGATTTGA
1 GGTTTTGAGTTTGAGATTTGA
218535 GG-TTTGAGTTTGA-ATTT-A
1 GGTTTTGAGTTTGAGATTTGA
218553 GGATTTTG
1 GG-TTTTG
218561 GGCTTAAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 3 0.13
19 4 0.17
20 14 0.61
21 2 0.09
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.49
Consensus pattern (21 bp):
GGTTTTGAGTTTGAGATTTGA
Found at i:221298 original size:16 final size:16
Alignment explanation
Indices: 221253--221303 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
221243 TATTAAAATA
221253 ATAAAATTTT-AATTT
1 ATAAAATTTTAAATTT
* *
221268 A-AATACTTTATAATTT
1 ATAAAATTTTA-AATTT
*
221284 ATAAAATTTTAAATTA
1 ATAAAATTTTAAATTT
221300 ATAA
1 ATAA
221304 TAGTAATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
14 6 0.21
15 1 0.04
16 14 0.50
17 7 0.25
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
ATAAAATTTTAAATTT
Found at i:221380 original size:15 final size:16
Alignment explanation
Indices: 221360--221395 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
221350 AACCTCTTAA
221360 AAATTATAAAAAT-AT
1 AAATTATAAAAATGAT
*
221375 AAATTATTAAAATGAT
1 AAATTATAAAAATGAT
221391 AAATT
1 AAATT
221396 TACATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
AAATTATAAAAATGAT
Found at i:233897 original size:55 final size:56
Alignment explanation
Indices: 233796--233920 Score: 146
Period size: 55 Copynumber: 2.2 Consensus size: 56
233786 ATATAAGAGG
* *
233796 CACACGGGCATGTGCCAGACTGTGTGTGTATACTGTTTTGAAACACACGGG-CAAA
1 CACACGGGCGTGTGCCAGACTGTGTGTGTATACTATTTTGAAACACACGGGTCAAA
* * ** * **
233851 CACACGAGCGTGTGCCAGA-TCGTGTGTGTTTACTATTTTGGGACACATGGGTCAGG
1 CACACGGGCGTGTGCCAGACT-GTGTGTGTATACTATTTTGAAACACACGGGTCAAA
233907 CACACGGGCGTGTG
1 CACACGGGCGTGTG
233921 TAAGTATATT
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
54 1 0.02
55 42 0.72
56 15 0.26
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (56 bp):
CACACGGGCGTGTGCCAGACTGTGTGTGTATACTATTTTGAAACACACGGGTCAAA
Found at i:234958 original size:5 final size:5
Alignment explanation
Indices: 234948--234987 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
234938 GGATGTTAAA
*
234948 TATTT TATTT TATTTT TATTT TATTC TA-TT TATTT TATTT
1 TATTT TATTT TA-TTT TATTT TATTT TATTT TATTT TATTT
234988 CTTTTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 3 0.10
5 23 0.74
6 5 0.16
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:236150 original size:39 final size:39
Alignment explanation
Indices: 236055--236297 Score: 252
Period size: 39 Copynumber: 6.2 Consensus size: 39
236045 GTTATCAAAT
* ** * *
236055 TACTGAACTGGCAGTGACACTGTAAACACTGTAATATAG
1 TACTGAACTGGTAGTGACACTGTAAACACTACAATACAA
* * ** * *
236094 TGCTGATCTGACAGTGACATTATAAACACTACAATACAA
1 TACTGAACTGGTAGTGACACTGTAAACACTACAATACAA
* *
236133 TATTGAACTGGTTGTGACACTGTAAACACTACAATACAA
1 TACTGAACTGGTAGTGACACTGTAAACACTACAATACAA
* * *
236172 TACTAAACTGGTAGTGACACTGTAAACACTAAAATATAA
1 TACTGAACTGGTAGTGACACTGTAAACACTACAATACAA
* * * * *
236211 TATTGAACTGATAGTGACACTGTAAACATTGCAATATAA
1 TACTGAACTGGTAGTGACACTGTAAACACTACAATACAA
* ** **
236250 TACTGAACCGACAGTGACACTGTAAACACTGTAATACAA
1 TACTGAACTGGTAGTGACACTGTAAACACTACAATACAA
236289 TACTGAACT
1 TACTGAACT
236298 AACGATAACA
Statistics
Matches: 169, Mismatches: 35, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 169 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.26
Consensus pattern (39 bp):
TACTGAACTGGTAGTGACACTGTAAACACTACAATACAA
Found at i:236267 original size:117 final size:117
Alignment explanation
Indices: 236055--236297 Score: 297
Period size: 117 Copynumber: 2.1 Consensus size: 117
236045 GTTATCAAAT
** * * * *
236055 TACTGAACTGGCAGTGACACTGTAAACACTGTAATATAGTGCTGATCTGACAGTGACATTATAAA
1 TACTGAACTGGCAGTGACACTGTAAACACTAAAATATAATACTGAACTGACAGTGACACTATAAA
* * ***
236120 CACTACAATACAATATTGAACTGGTTGTGACACTGTAAACACTACAATACAA
66 CACTACAATACAATACTGAACCGACAGTGACACTGTAAACACTACAATACAA
* * * * *
236172 TACTAAACTGGTAGTGACACTGTAAACACTAAAATATAATATTGAACTGATAGTGACACTGTAAA
1 TACTGAACTGGCAGTGACACTGTAAACACTAAAATATAATACTGAACTGACAGTGACACTATAAA
* * * **
236237 CATTGCAATATAATACTGAACCGACAGTGACACTGTAAACACTGTAATACAA
66 CACTACAATACAATACTGAACCGACAGTGACACTGTAAACACTACAATACAA
236289 TACTGAACT
1 TACTGAACT
236298 AACGATAACA
Statistics
Matches: 104, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
117 104 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.26
Consensus pattern (117 bp):
TACTGAACTGGCAGTGACACTGTAAACACTAAAATATAATACTGAACTGACAGTGACACTATAAA
CACTACAATACAATACTGAACCGACAGTGACACTGTAAACACTACAATACAA
Found at i:236309 original size:78 final size:77
Alignment explanation
Indices: 236058--236355 Score: 274
Period size: 78 Copynumber: 3.8 Consensus size: 77
236048 ATCAAATTAC
* * * * * * *
236058 TGAACTGGCAGTGACACTGTAAACACTGTAATATAGTGCTGATCTGACAGTGACATTATAAACAC
1 TGAACT-GAAGTGACACTGTAAACACTGCAATATAATACTGAACTGACAGTGACACTGTAAACAC
*
236123 TACAATACAATAT
65 TAAAATACAATAT
** * * * **
236136 TGAACTGGTTGTGACACTGTAAACACTACAATACAATACTAAACTGGTAGTGACACTGTAAACAC
1 TGAACT-GAAGTGACACTGTAAACACTGCAATATAATACTGAACTGACAGTGACACTGTAAACAC
*
236201 TAAAATATAATAT
65 TAAAATACAATAT
* *
236214 TGAACTGATAGTGACACTGTAAACATTGCAATATAATACTGAACCGACAGTGACACTGTAAACAC
1 TGAACTGA-AGTGACACTGTAAACACTGCAATATAATACTGAACTGACAGTGACACTGTAAACAC
** *
236279 TGTAATACAATAC
65 TAAAATACAATAT
* * * * ** * **
236292 TGAACT-AACGATAACACTGTAAATACCGTAATGCAGTACTGAACTGATGGTGACACTGTAAACA
1 TGAACTGAA-G-TGACACTGTAAACACTGCAATATAATACTGAACTGACAGTGACACTGTAAACA
236356 TCGTAATGCT
Statistics
Matches: 178, Mismatches: 39, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
76 1 0.01
77 3 0.02
78 174 0.98
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (77 bp):
TGAACTGAAGTGACACTGTAAACACTGCAATATAATACTGAACTGACAGTGACACTGTAAACACT
AAAATACAATAT
Found at i:236309 original size:117 final size:117
Alignment explanation
Indices: 236146--236356 Score: 264
Period size: 117 Copynumber: 1.8 Consensus size: 117
236136 TGAACTGGTT
* * * *
236146 GTGACACTGTAAACACTACAATACAATACTAAACTGGTAGTGACACTGTAAACACTAAAATATAA
1 GTGACACTGTAAACACTACAATACAATACTAAACTCGTAGTAACACTGTAAACACCAAAATACAA
*
236211 TATTGAACTGATAGTGACACTGTAAACATTGCAATATAATACTGAACCGACA
66 TACTGAACTGATAGTGACACTGTAAACATTGCAATATAATACTGAACCGACA
** * * ** *
236263 GTGACACTGTAAACACTGTAATACAATACTGAACTAACG-A-TAACACTGTAAATACCGTAATGC
1 GTGACACTGTAAACACTACAATACAATACTAAACT--CGTAGTAACACTGTAAACACCAAAATAC
* *
236326 AGTACTGAACTGATGGTGACACTGTAAACAT
64 AATACTGAACTGATAGTGACACTGTAAACAT
236357 CGTAATGCTA
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
117 76 0.97
118 1 0.01
119 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (117 bp):
GTGACACTGTAAACACTACAATACAATACTAAACTCGTAGTAACACTGTAAACACCAAAATACAA
TACTGAACTGATAGTGACACTGTAAACATTGCAATATAATACTGAACCGACA
Found at i:236364 original size:39 final size:39
Alignment explanation
Indices: 236055--236362 Score: 211
Period size: 39 Copynumber: 7.9 Consensus size: 39
236045 GTTATCAAAT
* * *
236055 TACTGAACTGGCAGTGACACTGTAAACA-CTGTAATATAG
1 TACTGAACTGACAGTGACACTGTAAACATC-GTAATACAA
* * * *
236094 TGCTGATCTGACAGTGACATTATAAACA-C-TACAATACAA
1 TACTGAACTGACAGTGACACTGTAAACATCGT--AATACAA
* ***
236133 TATTGAACTGGTTGTGACACTGTAAACA-C-TACAATACAA
1 TACTGAACTGACAGTGACACTGTAAACATCGT--AATACAA
* ** *
236172 TACTAAACTGGTAGTGACACTGTAAACA-C-TAAAATATAA
1 TACTGAACTGACAGTGACACTGTAAACATCGT--AATACAA
* * * * *
236211 TATTGAACTGATAGTGACACTGTAAACATTGCAATATAA
1 TACTGAACTGACAGTGACACTGTAAACATCGTAATACAA
*
236250 TACTGAACCGACAGTGACACTGTAAACA-CTGTAATACAA
1 TACTGAACTGACAGTGACACTGTAAACATC-GTAATACAA
* * * * * *
236289 TACTGAACTAAC-GATAACACTGTAAATACCGTAATGCAG
1 TACTGAACTGACAG-TGACACTGTAAACATCGTAATACAA
**
236328 TACTGAACTGATGGTGACACTGTAAACATCGTAAT
1 TACTGAACTGACAGTGACACTGTAAACATCGTAAT
236363 GCTATAATGA
Statistics
Matches: 219, Mismatches: 42, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 215 0.98
40 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (39 bp):
TACTGAACTGACAGTGACACTGTAAACATCGTAATACAA
Found at i:237971 original size:50 final size:50
Alignment explanation
Indices: 237889--237988 Score: 139
Period size: 50 Copynumber: 2.0 Consensus size: 50
237879 AACCTTATTC
237889 TAATCAATGTCAAATAGAAGAAACGTAATTCTATAAGGATTCTACTTGTG
1 TAATCAATGTCAAATAGAAGAAACGTAATTCTATAAGGATTCTACTTGTG
* * * **
237939 TAATCAATGTCAAATATAA-AAAGTGTAGTTCTATTCGGATTCTACTTGTG
1 TAATCAATGTCAAATAGAAGAAA-CGTAATTCTATAAGGATTCTACTTGTG
237989 CAGCATGGTC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 3 0.07
50 41 0.93
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (50 bp):
TAATCAATGTCAAATAGAAGAAACGTAATTCTATAAGGATTCTACTTGTG
Found at i:239555 original size:13 final size:13
Alignment explanation
Indices: 239537--239569 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
239527 TAGAAAAAAG
239537 TATCAAATTTATA
1 TATCAAATTTATA
239550 TATCAAA-TTATA
1 TATCAAATTTATA
*
239562 TATTAAAT
1 TATCAAAT
239570 CTTTTCGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (13 bp):
TATCAAATTTATA
Found at i:240999 original size:22 final size:21
Alignment explanation
Indices: 240961--241004 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
240951 ATTTACCTTG
240961 TTTATTACTATGATGTATCTAT
1 TTTATTACTATGATGTAT-TAT
*
240983 TTTATTA-TATTGTTGTATTAT
1 TTTATTACTA-TGATGTATTAT
241004 T
1 T
241005 GGGATTGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.25, C:0.05, G:0.09, T:0.61
Consensus pattern (21 bp):
TTTATTACTATGATGTATTAT
Found at i:246547 original size:21 final size:22
Alignment explanation
Indices: 246523--246569 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
246513 TTTTTTAAAT
*
246523 TTTATTCTTATTAATATAA-TA
1 TTTATTATTATTAATATAATTA
*
246544 TTTA-TATTATTTATATAATTA
1 TTTATTATTATTAATATAATTA
246565 TTTAT
1 TTTAT
246570 AATGGTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTATTATTATTAATATAATTA
Found at i:246559 original size:20 final size:21
Alignment explanation
Indices: 246530--246570 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
246520 AATTTTATTC
246530 TTATTAATATAA-TATTTATA
1 TTATTAATATAATTATTTATA
*
246550 TTATTTATATAATTATTTATA
1 TTATTAATATAATTATTTATA
246571 ATGGTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTATTAATATAATTATTTATA
Found at i:253603 original size:18 final size:18
Alignment explanation
Indices: 253580--253616 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
253570 AAAGGTTCAA
253580 TCTGTGGACACCCTTCTT
1 TCTGTGGACACCCTTCTT
*
253598 TCTGTGGACACCTTTCTT
1 TCTGTGGACACCCTTCTT
253616 T
1 T
253617 ATGCTTAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.30, G:0.16, T:0.43
Consensus pattern (18 bp):
TCTGTGGACACCCTTCTT
Found at i:257169 original size:17 final size:17
Alignment explanation
Indices: 257147--257182 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
257137 ACGGGAGAAC
257147 AAAGAAAAAAAGAAAGA
1 AAAGAAAAAAAGAAAGA
*
257164 AAAGAAAGAAAGAAAGA
1 AAAGAAAAAAAGAAAGA
257181 AA
1 AA
257183 TAAGGAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAAAGAAAGA
Found at i:257202 original size:4 final size:4
Alignment explanation
Indices: 257147--257182 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
257137 ACGGGAGAAC
*
257147 AAAG AAAA AAAG AAAG AAAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG -AAAG AAAG AAAG AAAG AAA
257183 TAAGGAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:257420 original size:23 final size:23
Alignment explanation
Indices: 257377--257421 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
257367 AATTTGGTTT
*
257377 TTATTAGTATTTATTATTTTAAG
1 TTATTAGTATTTATTAATTTAAG
*
257400 TTATTTGT-TTTATTTAATTTAA
1 TTATTAGTATTTA-TTAATTTAA
257422 TTTTTAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (23 bp):
TTATTAGTATTTATTAATTTAAG
Found at i:257963 original size:14 final size:15
Alignment explanation
Indices: 257944--257989 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
257934 AACCTAACTA
257944 ATTAATTACCAAAAT
1 ATTAATTACCAAAAT
*
257959 A-TAATATA-AAAAAT
1 ATTAAT-TACCAAAAT
257973 AATTAATTACCAAAAT
1 -ATTAATTACCAAAAT
257989 A
1 A
257990 ATATCTACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
14 9 0.36
15 7 0.28
16 9 0.36
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTAATTACCAAAAT
Found at i:257987 original size:16 final size:16
Alignment explanation
Indices: 257942--257991 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
257932 TAAACCTAAC
257942 TAATTAATTACCAAAA
1 TAATTAATTACCAAAA
*
257958 T-A-TAATATA-AAAAA
1 TAATTAAT-TACCAAAA
257972 TAATTAATTACCAAAA
1 TAATTAATTACCAAAA
257988 TAAT
1 TAAT
257992 ATCTACATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 9 0.32
15 6 0.21
16 13 0.46
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATTAATTACCAAAA
Found at i:258062 original size:22 final size:22
Alignment explanation
Indices: 258034--258077 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
258024 AAATAAATAT
*
258034 TTATTTTTTACCATTTTAGTAA
1 TTATTTTGTACCATTTTAGTAA
*
258056 TTATTTTGTACCATTTTGGTAA
1 TTATTTTGTACCATTTTAGTAA
258078 ATAATGGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.57
Consensus pattern (22 bp):
TTATTTTGTACCATTTTAGTAA
Found at i:260266 original size:35 final size:35
Alignment explanation
Indices: 260227--260293 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
260217 TTCATACTTA
*
260227 TAAACCCTAAACCCTAAATTTAAAAACTTAAAATC
1 TAAACCATAAACCCTAAATTTAAAAACTTAAAATC
* * *
260262 TAAACCATAAATCTTAAATTTAAAACCTTAAA
1 TAAACCATAAACCCTAAATTTAAAAACTTAAA
260294 CCCTAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.28
Consensus pattern (35 bp):
TAAACCATAAACCCTAAATTTAAAAACTTAAAATC
Found at i:260287 original size:21 final size:21
Alignment explanation
Indices: 260263--260316 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
260253 CTTAAAATCT
* * *
260263 AAACCATAAATCTTAAATTTA
1 AAACCATAAACCCTAAATTAA
*
260284 AAACCTTAAACCCTAAATTAA
1 AAACCATAAACCCTAAATTAA
*
260305 AAACCATTAACC
1 AAACCATAAACC
260317 TCAATTTCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (21 bp):
AAACCATAAACCCTAAATTAA
Found at i:262790 original size:24 final size:24
Alignment explanation
Indices: 262762--262808 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
262752 CACCATACAC
262762 GGAGTTGGATCTTCATTTTCTACT
1 GGAGTTGGATCTTCATTTTCTACT
262786 GGAGTTGGATCTTCATTTTCTAC
1 GGAGTTGGATCTTCATTTTCTAC
262809 AAGTTTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.21, T:0.45
Consensus pattern (24 bp):
GGAGTTGGATCTTCATTTTCTACT
Found at i:262823 original size:18 final size:18
Alignment explanation
Indices: 262800--262837 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
262790 TTGGATCTTC
262800 ATTTTCTACAAGTTTCAT
1 ATTTTCTACAAGTTTCAT
262818 ATTTTCTACAAGTTTCAT
1 ATTTTCTACAAGTTTCAT
262836 AT
1 AT
262838 AAACTAACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.16, G:0.05, T:0.50
Consensus pattern (18 bp):
ATTTTCTACAAGTTTCAT
Found at i:263266 original size:26 final size:28
Alignment explanation
Indices: 263213--263269 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
263203 TTTCAATAAA
*
263213 TAAAATACGAATTTAAAAATATATCATAC
1 TAAAATAC-AATTTAAAAATATAACATAC
263242 TAAAATA-AATTTAAAAATA-AACATAC
1 TAAAATACAATTTAAAAATATAACATAC
263268 TA
1 TA
263270 CATTTCTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.30
27 12 0.44
29 7 0.26
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.30
Consensus pattern (28 bp):
TAAAATACAATTTAAAAATATAACATAC
Found at i:263293 original size:4 final size:4
Alignment explanation
Indices: 263272--263346 Score: 79
Period size: 4 Copynumber: 19.5 Consensus size: 4
263262 ACATACTACA
* *
263272 TTTC TCTTC -TTC -TTC TTTC TTTCC TCTC CTTC TTTC -TTC TTTC TTTC
1 TTTC T-TTC TTTC TTTC TTTC TTT-C TTTC TTTC TTTC TTTC TTTC TTTC
263319 TTTC TTTC TTTC TTT- TTT- TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
263347 CTTCTGCCTG
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
3 15 0.24
4 41 0.66
5 6 0.10
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTC
Found at i:265039 original size:31 final size:31
Alignment explanation
Indices: 264966--265054 Score: 97
Period size: 31 Copynumber: 2.9 Consensus size: 31
264956 TAAAATGGTT
* * *
264966 ATTGAATTATTCAGAAGATTTCATTTAAGTC
1 ATTGAATTATTCAAAAGTTTTCATTTAAGTA
* * * *
264997 ATTAAAATATTCAAAAGTTTTCGTTTGAGTA
1 ATTGAATTATTCAAAAGTTTTCATTTAAGTA
* *
265028 ATTGAATTATTCGAAAGTTTTTATTTA
1 ATTGAATTATTCAAAAGTTTTCATTTA
265055 GGTCACTCGA
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (31 bp):
ATTGAATTATTCAAAAGTTTTCATTTAAGTA
Found at i:266726 original size:49 final size:49
Alignment explanation
Indices: 266654--266754 Score: 202
Period size: 49 Copynumber: 2.1 Consensus size: 49
266644 TTAAAACTTT
266654 TTCCAATATCATCCTTTTTATTTTGTGTATACAAATAAACATCCATTGC
1 TTCCAATATCATCCTTTTTATTTTGTGTATACAAATAAACATCCATTGC
266703 TTCCAATATCATCCTTTTTATTTTGTGTATACAAATAAACATCCATTGC
1 TTCCAATATCATCCTTTTTATTTTGTGTATACAAATAAACATCCATTGC
266752 TTC
1 TTC
266755 GTTAAATTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.44
Consensus pattern (49 bp):
TTCCAATATCATCCTTTTTATTTTGTGTATACAAATAAACATCCATTGC
Found at i:267549 original size:16 final size:16
Alignment explanation
Indices: 267525--267561 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
267515 TTTAATCTTT
267525 TAAAA-ATTATAAA-AA
1 TAAAATATTA-AAATAA
267540 TAAAATATTAAAATAA
1 TAAAATATTAAAATAA
267556 TAAAAT
1 TAAAAT
267562 TATAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
TAAAATATTAAAATAA
Found at i:267567 original size:16 final size:15
Alignment explanation
Indices: 267527--267567 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
267517 TAATCTTTTA
267527 AAAATTAT-AAAAAT
1 AAAATTATAAAAAAT
267541 AAAA-TATTAAAATAAT
1 AAAATTA-TAAAA-AAT
267557 AAAATTATAAA
1 AAAATTATAAA
267568 TTTATTATCG
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 2 0.09
14 5 0.22
15 3 0.13
16 11 0.48
17 2 0.09
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAATTATAAAAAAT
Found at i:281823 original size:17 final size:18
Alignment explanation
Indices: 281793--281828 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
281783 AAAATTTGTT
281793 ATAATTATACATTTAACA
1 ATAATTATACATTTAACA
281811 ATAATTATA-ATTTAACA
1 ATAATTATACATTTAACA
281828 A
1 A
281829 AAGTTGTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAATTATACATTTAACA
Found at i:281842 original size:44 final size:46
Alignment explanation
Indices: 281783--281872 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 46
281773 TACATAAAAT
* * *
281783 AAAATTTGTTATAATTA-T-ACATTTAACAATAATTATAATTTAAC
1 AAAAGTTGTGATAATTATTAACATTTAAAAATAATTATAATTTAAC
*
281827 AAAAGTTGTGATAATTATTACACATTTAAAAATAGTTATAATTTAA
1 AAAAGTTGTGATAATTATTA-ACATTTAAAAATAATTATAATTTAA
281873 TTACATTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
44 15 0.38
45 1 0.03
47 23 0.59
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.41
Consensus pattern (46 bp):
AAAAGTTGTGATAATTATTAACATTTAAAAATAATTATAATTTAAC
Found at i:309814 original size:7 final size:7
Alignment explanation
Indices: 309802--309832 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
309792 AATTCAATGC
*
309802 AAAATAG
1 AAAATAA
309809 AAAATAA
1 AAAATAA
309816 AAAATAA
1 AAAATAA
309823 AAAATAA
1 AAAATAA
309830 AAA
1 AAA
309833 GCAAGTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (7 bp):
AAAATAA
Found at i:320739 original size:14 final size:14
Alignment explanation
Indices: 320720--320750 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
320710 ATATTTAAAG
*
320720 TATTATTATAAATT
1 TATTATTACAAATT
320734 TATTATTACAAATT
1 TATTATTACAAATT
320748 TAT
1 TAT
320751 ATGAATTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTATTACAAATT
Found at i:328784 original size:16 final size:16
Alignment explanation
Indices: 328746--328788 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
328736 ATAAAAGAAG
* *
328746 AATAATGATATTAAATA
1 AATAATAATA-TAAAAA
328763 AA-AATAATATAAAAA
1 AATAATAATATAAAAA
328778 AATAATAATAT
1 AATAATAATAT
328789 TTTGTAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 7 0.30
16 14 0.61
17 2 0.09
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (16 bp):
AATAATAATATAAAAA
Found at i:329410 original size:258 final size:259
Alignment explanation
Indices: 328948--329468 Score: 875
Period size: 258 Copynumber: 2.0 Consensus size: 259
328938 TATTTAGATT
* * * *
328948 TTTTTATTGTTTTTATGGGCTCTCAAACAAGTCCAATTAATGAATTTGTCTGAATTGTTAAGAAA
1 TTTTTATTGTTTTTATGGGCTCTCAAACAAGCCCAACTAACGAACTTGTCTGAATTGTTAAGAAA
* *
329013 ATTATACCAATCAAAATATTGACACATCAACATTTTGTTTAGTGACCAAGGCATTTTAACGGTGG
66 ATTATACCAATCAAAAGATTGACACATCAACATTTTGTTCAGTGACCAAGGCATTTTAACGGTGG
* *
329078 AGTGATTAAAAATGACAATTAATCTATTGAAAGTGATTAAATTTAAAACTTGGGTGACTTTAGTA
131 AGTGATTAAAAATGACAATTAATCTATCGAAAGTGACTAAATTTAAAACTTGGGTGACTTTAGTA
*
329143 ATATATCTTTTAAATTTTTAAAAATTATTATTAAG-AAAAAAATTTAAAAGTATCAAACTGATA
196 ATATATCTTTTAAATTTTTAAAAATTATTATTAAGAAAAAAAATTTAAAAGTAGCAAACTGATA
*
329206 TTTTTATTGTTTTTATGGGCTCTCAAACAAGCCCAACTAACGAACTTGTCTTAATTGTTAAGAAA
1 TTTTTATTGTTTTTATGGGCTCTCAAACAAGCCCAACTAACGAACTTGTCTGAATTGTTAAGAAA
* *
329271 ATTATACCAATCAAAAGATTGACACATTAACATTTTGTTCAGTGACCAAGGCATTTTAGCGGTGG
66 ATTATACCAATCAAAAGATTGACACATCAACATTTTGTTCAGTGACCAAGGCATTTTAACGGTGG
*
329336 AGTGATTAAAAATGACAATTAATCTATCCG-AAGTGACTAAATTTAAAACTTGGGTGACTTTTGT
131 AGTGATTAAAAATGACAATTAATCTAT-CGAAAGTGACTAAATTTAAAACTTGGGTGACTTTAGT
* * *
329400 AATTTATCTTTTAAATTTTTTAAAATTATTATTAAGAAAAAAAATTTAAAAGTAGCAAATTGATA
195 AATATATCTTTTAAATTTTTAAAAATTATTATTAAGAAAAAAAATTTAAAAGTAGCAAACTGATA
329465 TTTT
1 TTTT
329469 AGTTATAGTT
Statistics
Matches: 245, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
258 214 0.87
259 31 0.13
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (259 bp):
TTTTTATTGTTTTTATGGGCTCTCAAACAAGCCCAACTAACGAACTTGTCTGAATTGTTAAGAAA
ATTATACCAATCAAAAGATTGACACATCAACATTTTGTTCAGTGACCAAGGCATTTTAACGGTGG
AGTGATTAAAAATGACAATTAATCTATCGAAAGTGACTAAATTTAAAACTTGGGTGACTTTAGTA
ATATATCTTTTAAATTTTTAAAAATTATTATTAAGAAAAAAAATTTAAAAGTAGCAAACTGATA
Found at i:347763 original size:15 final size:17
Alignment explanation
Indices: 347743--347774 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
347733 ATATAGTAAT
347743 ATTT-AAATTT-AAAAC
1 ATTTAAAATTTCAAAAC
347758 ATTTAAAATTTCAAAAC
1 ATTTAAAATTTCAAAAC
347775 TTCAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 6 0.40
17 5 0.33
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (17 bp):
ATTTAAAATTTCAAAAC
Found at i:350862 original size:29 final size:28
Alignment explanation
Indices: 350807--350868 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
350797 TCATTTAGTT
*
350807 AATTTTTAAAAATTAAAAAATTATAAAA
1 AATTTTTAAAAATTAAAAAAATATAAAA
350835 ATATTTTTAAAAATTAAAAAACAT-TAAAA
1 A-ATTTTTAAAAATTAAAAAA-ATATAAAA
350864 AATTT
1 AATTT
350869 ATTCAACCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 5 0.16
29 25 0.81
30 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (28 bp):
AATTTTTAAAAATTAAAAAAATATAAAA
Found at i:351330 original size:31 final size:31
Alignment explanation
Indices: 351288--351357 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
351278 AAATGTTATG
*
351288 TTTTTAGATTTTGAGTTAATTGCATGAGACA
1 TTTTTAAATTTTGAGTTAATTGCATGAGACA
*
351319 TTTTTAAATTTTGAGTTAATTGCATGAGATA
1 TTTTTAAATTTTGAGTTAATTGCATGAGACA
351350 TTTTTAAA
1 TTTTTAAA
351358 ATTTAATCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.31, C:0.04, G:0.16, T:0.49
Consensus pattern (31 bp):
TTTTTAAATTTTGAGTTAATTGCATGAGACA
Found at i:351456 original size:18 final size:18
Alignment explanation
Indices: 351422--351455 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
351412 ATATTTTTTA
351422 AAAGTAAAAATTAAAAAT
1 AAAGTAAAAATTAAAAAT
351440 AAAGT-AAAATTAAAAA
1 AAAGTAAAAATTAAAAA
351456 AAGAAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (18 bp):
AAAGTAAAAATTAAAAAT
Found at i:351551 original size:5 final size:5
Alignment explanation
Indices: 351541--351574 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
351531 ACAATATTTA
351541 TTATT TTATT TTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTAT
351575 GTCACGAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:356368 original size:18 final size:19
Alignment explanation
Indices: 356334--356369 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
356324 AAGCCAATTT
*
356334 TAAAAAATTATTTTTATAC
1 TAAAAAATTATTATTATAC
356353 TAAAAAATTA-TATTATA
1 TAAAAAATTATTATTATA
356370 AATATGAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
TAAAAAATTATTATTATAC
Found at i:356524 original size:25 final size:25
Alignment explanation
Indices: 356483--356546 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 25
356473 TTAAAAACTT
*
356483 TATTATAAAAA-A-T-TAATTTACA
1 TATTATAAAAATATTATAATATACA
**
356505 TATTATAAAAATATTATAATATATT
1 TATTATAAAAATATTATAATATACA
356530 TATTTATAAAAAT-TTAT
1 TA-TTATAAAAATATTAT
356547 GAGTCGAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
22 11 0.31
23 1 0.03
24 1 0.03
25 12 0.34
26 10 0.29
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
TATTATAAAAATATTATAATATACA
Found at i:361628 original size:29 final size:31
Alignment explanation
Indices: 361595--361671 Score: 113
Period size: 29 Copynumber: 2.5 Consensus size: 31
361585 TTTATTTAAC
*
361595 TTAAATTAAATAATAATAAATTCTAAAT-G-
1 TTAAATTAAATAATAATAAAATCTAAATAGA
361624 TTAAATTAAATAATAATAAAATCTAAATAGA
1 TTAAATTAAATAATAATAAAATCTAAATAGA
*
361655 CTAAATATAAATAATAA
1 TTAAAT-TAAATAATAA
361672 CTAGATAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
29 27 0.63
30 1 0.02
31 5 0.12
32 10 0.23
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.34
Consensus pattern (31 bp):
TTAAATTAAATAATAATAAAATCTAAATAGA
Found at i:361792 original size:17 final size:17
Alignment explanation
Indices: 361770--361807 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
361760 CAATTGTTTC
* *
361770 AAATTTATTTTAAATTT
1 AAATTTAATTAAAATTT
361787 AAATTTAATTAAAATTT
1 AAATTTAATTAAAATTT
361804 AAAT
1 AAAT
361808 GGATTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATTTAATTAAAATTT
Found at i:362659 original size:49 final size:52
Alignment explanation
Indices: 362618--362715 Score: 132
Period size: 52 Copynumber: 1.9 Consensus size: 52
362608 TAATAGTTGA
362618 TAATAAT-AATAACTATTTAAT-AA-A-TAATAATAATATTAATAATAAATAG
1 TAATAATAAATAAC-ATTTAATAAATATTAATAATAATATTAATAATAAATAG
* * *
362667 TAGTAATAAATAGCATTTAATAAATATTAATAAAAATATTAATAATAAA
1 TAATAATAAATAACATTTAATAAATATTAATAATAATATTAATAATAAA
362716 ATGAATAAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
49 13 0.31
50 7 0.17
51 1 0.02
52 21 0.50
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (52 bp):
TAATAATAAATAACATTTAATAAATATTAATAATAATATTAATAATAAATAG
Found at i:362723 original size:12 final size:13
Alignment explanation
Indices: 362642--362715 Score: 80
Period size: 13 Copynumber: 5.8 Consensus size: 13
362632 ATTTAATAAA
362642 TAATAAT-AATAT
1 TAATAATAAATAT
*
362654 TAATAATAAATAG
1 TAATAATAAATAT
* *
362667 TAGTAATAAATAG
1 TAATAATAAATAT
* *
362680 CATTTAATAAATAT
1 TA-ATAATAAATAT
362694 TAATAA-AAATAT
1 TAATAATAAATAT
362706 TAATAATAAA
1 TAATAATAAA
362716 ATGAATAAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
12 19 0.37
13 23 0.44
14 10 0.19
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (13 bp):
TAATAATAAATAT
Found at i:363844 original size:29 final size:29
Alignment explanation
Indices: 363793--364195 Score: 389
Period size: 29 Copynumber: 13.7 Consensus size: 29
363783 AAGGTCCTTA
* *
363793 AACTATCCAAAAATTTCAATTTTACCCTCG
1 AACT-TCCAAAAATTCCATTTTTACCCTCG
* *
363823 AACTTCCAAAAATCCCATTTTTAACCTCG
1 AACTTCCAAAAATTCCATTTTTACCCTCG
363852 AAACTTCCAAAAATTCCA-TTTTACCCTCG
1 -AACTTCCAAAAATTCCATTTTTACCCTCG
363881 AACTTCCAAAAATTCCATTTTTACCC-CTG
1 AACTTCCAAAAATTCCATTTTTACCCTC-G
*
363910 AACTTCCAAAAATCCCATTTTTAACCC-CG
1 AACTTCCAAAAATTCCATTTTT-ACCCTCG
*
363939 AAACTTCCAAAAATTCCA-TTTTATCCC-CA
1 -AACTTCCAAAAATTCCATTTTTA-CCCTCG
* * **
363968 AACTTCTAAAAATTCAATTTTTGACTCC-AA
1 AACTTCCAAAAATTCCATTTTT-AC-CCTCG
363998 AACTTCCAAAAATTCCATTTTTACCC-CG
1 AACTTCCAAAAATTCCATTTTTACCCTCG
* *
364026 AACTTCTAAAAA-TCTAATTTTTGA-CCTCG
1 AACTTCCAAAAATTC-CATTTTT-ACCCTCG
*
364055 AAAC-TCCTAAAAATTCCATTTTTACCC-CTA
1 -AACTTCC-AAAAATTCCATTTTTACCCTC-G
364085 AACTTCCAAAAATTCCATTTTTGA-CCTCG
1 AACTTCCAAAAATTCCATTTTT-ACCCTCG
* *
364114 AAACTCCCAAAAATTACATTTTTACCCTCG
1 -AACTTCCAAAAATTCCATTTTTACCCTCG
* * *
364144 AACTTCCAAAAAAATCCCAATTTTGCCCTCG
1 AACTTCC--AAAAATTCCATTTTTACCCTCG
* *
364175 AACCTCCAAAAAATCCATTTT
1 AACTTCCAAAAATTCCATTTT
364196 CCCACTGAAT
Statistics
Matches: 316, Mismatches: 33, Indels: 49
0.79 0.08 0.12
Matches are distributed among these distances:
27 2 0.01
28 55 0.17
29 122 0.39
30 111 0.35
31 26 0.08
ACGTcount: A:0.35, C:0.29, G:0.03, T:0.32
Consensus pattern (29 bp):
AACTTCCAAAAATTCCATTTTTACCCTCG
Found at i:363944 original size:87 final size:88
Alignment explanation
Indices: 363793--364155 Score: 429
Period size: 87 Copynumber: 4.1 Consensus size: 88
363783 AAGGTCCTTA
* * * *
363793 AACTATCCAAAAATTTCAATTTTA-CCCTCGAACTTCCAAAAATCCCATTTTTAACCTCGAAACT
1 AACT-TCCAAAAATTCCATTTTTACCCCT-AAACTTCCAAAAATCCCATTTTTAACCCCGAAACT
363857 TCCAAAAATTCCA-TTTTACCCTCG
64 TCCAAAAATTCCATTTTTACCCTCG
*
363881 AACTTCCAAAAATTCCATTTTTACCCCTGAACTTCCAAAAATCCCATTTTTAACCCCGAAACTTC
1 AACTTCCAAAAATTCCATTTTTACCCCTAAACTTCCAAAAATCCCATTTTTAACCCCGAAACTTC
*
363946 CAAAAATTCCA-TTTTATCCC-CA
66 CAAAAATTCCATTTTTA-CCCTCG
* * * * *
363968 AACTTCTAAAAATTCAATTTTTGACTCCAAAACTTCCAAAAATTCCATTTTT-ACCCCG-AACTT
1 AACTTCCAAAAATTCCATTTTT-ACCCCTAAACTTCCAAAAATCCCATTTTTAACCCCGAAACTT
* *
364031 CTAAAAA-TCTAATTTTTGA-CCTCG
65 CCAAAAATTC-CATTTTT-ACCCTCG
* * *
364055 AAAC-TCCTAAAAATTCCATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCTCGAAACT
1 -AACTTCC-AAAAATTCCATTTTTACCCCTAAACTTCCAAAAATCCCATTTTTAACCCCGAAACT
* *
364119 CCCAAAAATTACATTTTTACCCTCG
64 TCCAAAAATTCCATTTTTACCCTCG
364144 AACTTCCAAAAA
1 AACTTCCAAAAA
364156 AATCCCAATT
Statistics
Matches: 239, Mismatches: 22, Indels: 28
0.83 0.08 0.10
Matches are distributed among these distances:
85 2 0.01
86 14 0.06
87 130 0.54
88 68 0.28
89 24 0.10
90 1 0.00
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.32
Consensus pattern (88 bp):
AACTTCCAAAAATTCCATTTTTACCCCTAAACTTCCAAAAATCCCATTTTTAACCCCGAAACTTC
CAAAAATTCCATTTTTACCCTCG
Found at i:365195 original size:3 final size:3
Alignment explanation
Indices: 365182--365238 Score: 50
Period size: 3 Copynumber: 19.3 Consensus size: 3
365172 ACAGTATTTA
*
365182 AAT AA- AAT AAT AAT ATAT AAT AAT -AT AAT AAT AGAT -AG AAT AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
365226 AA- AAT AAAT AAT A
1 AAT AAT -AAT AAT A
365239 TAGAAATATA
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
2 7 0.16
3 30 0.67
4 8 0.18
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:365209 original size:15 final size:13
Alignment explanation
Indices: 365182--365238 Score: 57
Period size: 15 Copynumber: 4.3 Consensus size: 13
365172 ACAGTATTTA
365182 AATAA-AAT-AAT
1 AATAATAATAAAT
365193 AATATATAATAATAT
1 AATA-ATAATAA-AT
365208 AATAATAGATAGAAT
1 AATAATA-ATA-AAT
365223 AATAA-AATAAAT
1 AATAATAATAAAT
365235 AATA
1 AATA
365239 TAGAAATATA
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
11 4 0.10
12 8 0.20
13 6 0.15
14 5 0.12
15 16 0.40
16 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (13 bp):
AATAATAATAAAT
Found at i:372789 original size:27 final size:26
Alignment explanation
Indices: 372739--372790 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
372729 TAATTAATTT
*
372739 AATAATATGTGTCACTTTACTATAAA
1 AATAATATGTGTCAATTTACTATAAA
372765 AATAATAATGTGTCAATTCTA-TATAA
1 AATAAT-ATGTGTCAATT-TACTATAA
372791 TTTATTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
27 15 0.65
28 2 0.09
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (26 bp):
AATAATATGTGTCAATTTACTATAAA
Found at i:377214 original size:3 final size:3
Alignment explanation
Indices: 377208--377234 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
377198 CTTCTTTAGA
377208 ACC ACC ACC ACC ACC ACC ACC ACC ACC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC
377235 TGGTTTTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Done.