Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011431.1 Kokia drynarioides strain JFW-HI SEQ_126415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 176649
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 567 characters in sequence are not A, C, G, or T
Found at i:7356 original size:2 final size:2
Alignment explanation
Indices: 7349--7375 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7339 AATTGAATTT
7349 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7376 TATTTTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10248 original size:5 final size:5
Alignment explanation
Indices: 10238--10270 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
10228 AGGAATACTC
10238 TCATA TCATA TCATA TCATA TCATA TCATA TCA
1 TCATA TCATA TCATA TCATA TCATA TCATA TCA
10271 ACATATAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (5 bp):
TCATA
Found at i:20084 original size:22 final size:24
Alignment explanation
Indices: 20050--20097 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
20040 GGTTGCATTA
20050 ATTTATATGGT-CCATAATCACAT
1 ATTTATATGGTCCCATAATCACAT
*
20073 ATTTAT-TGGTCCCATAATCTCAT
1 ATTTATATGGTCCCATAATCACAT
20096 AT
1 AT
20098 AATACTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (24 bp):
ATTTATATGGTCCCATAATCACAT
Found at i:22955 original size:18 final size:19
Alignment explanation
Indices: 22920--22960 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
22910 ATTAAATAGT
* *
22920 TCGAGTTATTTGAGTCAA-
1 TCGAGTTATTCGAATCAAC
22938 TCGAGTTATTCGAATCAAC
1 TCGAGTTATTCGAATCAAC
22957 TCGA
1 TCGA
22961 ATAAAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (19 bp):
TCGAGTTATTCGAATCAAC
Found at i:26014 original size:6 final size:6
Alignment explanation
Indices: 26003--26041 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
25993 TGATCAAAAT
* * *
26003 TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
26042 TATGAATTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (6 bp):
TGAAAG
Found at i:29098 original size:23 final size:22
Alignment explanation
Indices: 29054--29098 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
29044 AACACATAAT
* *
29054 TAATTAACATTTATTTTTTCAA
1 TAATTAACATTTAATTTATCAA
*
29076 TAATTAACTTTTTAATTTATCAA
1 TAATTAAC-ATTTAATTTATCAA
29099 GTAGCCCTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (22 bp):
TAATTAACATTTAATTTATCAA
Found at i:42155 original size:2 final size:2
Alignment explanation
Indices: 42150--42193 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
42140 TATATATATA
*
42150 TG TG TG TG TG TG TG TG CG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
42192 TG
1 TG
42194 AGAGAGAGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.02, G:0.50, T:0.48
Consensus pattern (2 bp):
TG
Found at i:43631 original size:2 final size:2
Alignment explanation
Indices: 43578--43612 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
43568 TGAAAAGAGA
43578 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
43613 ATAGATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:44451 original size:26 final size:28
Alignment explanation
Indices: 44409--44471 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 28
44399 GTGGTGGTTT
*
44409 AATTTTTTTCTTTAATAT-TA-ATATAA
1 AATTTTTTTCTTCAATATATATATATAA
*
44435 AATTTATTTT-TTCAATATATATATATATT
1 AATTT-TTTTCTTCAATATATATATATA-A
44464 AATTTTTT
1 AATTTTTT
44472 AGAATTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
26 12 0.39
27 6 0.19
28 8 0.26
29 5 0.16
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (28 bp):
AATTTTTTTCTTCAATATATATATATAA
Found at i:55840 original size:30 final size:32
Alignment explanation
Indices: 55793--55853 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 32
55783 TTTAAATTTT
* *
55793 AAATATATTTATATTTATTTTATTTTAATATC
1 AAATATATTTATATTTATTATAGTTTAATATC
55825 AAATA-ATTT-TATTTATTATAGTTTAATAT
1 AAATATATTTATATTTATTATAGTTTAATAT
55854 ATAGTAGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 18 0.67
31 4 0.15
32 5 0.19
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (32 bp):
AAATATATTTATATTTATTATAGTTTAATATC
Found at i:57051 original size:16 final size:16
Alignment explanation
Indices: 57030--57060 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57020 AACAAGGGGA
*
57030 ATTTTCAATCAATCAT
1 ATTTTCAACCAATCAT
57046 ATTTTCAACCAATCA
1 ATTTTCAACCAATCA
57061 AAAAGCACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTTTCAACCAATCAT
Found at i:63913 original size:8 final size:8
Alignment explanation
Indices: 63900--63928 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
63890 TGTATTCACC
63900 AAAAAAAG
1 AAAAAAAG
63908 AAAAAAAG
1 AAAAAAAG
63916 AAAAAAAG
1 AAAAAAAG
63924 AAAAA
1 AAAAA
63929 GGAGGAACTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:66423 original size:13 final size:13
Alignment explanation
Indices: 66405--66439 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
66395 CTTCCAAAAA
*
66405 AATAATAAATTAG
1 AATAATAAATAAG
66418 AATAATAAATAAG
1 AATAATAAATAAG
66431 AA-AATAAAT
1 AATAATAAAT
66440 CAATTCATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 7 0.33
13 14 0.67
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (13 bp):
AATAATAAATAAG
Found at i:95127 original size:20 final size:20
Alignment explanation
Indices: 95099--95141 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
95089 TGATAATTTC
* *
95099 TTTAAAATTAAAATATTTAT
1 TTTAAAATTAAAACATTCAT
* *
95119 TTTATAATTTAAACATTCAT
1 TTTAAAATTAAAACATTCAT
95139 TTT
1 TTT
95142 TTTTTTTTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAAAATTAAAACATTCAT
Found at i:113130 original size:4 final size:4
Alignment explanation
Indices: 113121--113146 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
113111 CTATTTGTCT
113121 TTTC TTTC TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TT
113147 CTTCTTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:135382 original size:23 final size:22
Alignment explanation
Indices: 135356--135453 Score: 79
Period size: 23 Copynumber: 4.2 Consensus size: 22
135346 ACACTAGTGC
135356 GCTCTCTGTTTAGCACAGTGTGT
1 GCTCTCTGTTTAGCAC-GTGTGT
* * *
135379 GCTCTGTGTTTATCACGTCTCGT
1 GCTCTCTGTTTAGCACGTGT-GT
* *
135402 GCTCTCTGTTATTAGCACTTCGCGT
1 GCTCTCTG-T-TTAGCACGT-GTGT
* *
135427 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCAC-GTGTGT
135450 GCTC
1 GCTC
135454 AGTACTTTGT
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
22 3 0.05
23 37 0.62
24 3 0.05
25 17 0.28
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.41
Consensus pattern (22 bp):
GCTCTCTGTTTAGCACGTGTGT
Found at i:135484 original size:23 final size:23
Alignment explanation
Indices: 135452--135506 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
135442 CTTTGTGTGC
*
135452 TCAGTACTTTGTGTACTCTCTGT
1 TCAGTACTTTGTGCACTCTCTGT
* *
135475 TTAGTACTTTGTGCGCTCTCTGT
1 TCAGTACTTTGTGCACTCTCTGT
135498 TCAGTACTT
1 TCAGTACTT
135507 CGATAATCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (23 bp):
TCAGTACTTTGTGCACTCTCTGT
Found at i:137539 original size:23 final size:23
Alignment explanation
Indices: 137431--137533 Score: 179
Period size: 23 Copynumber: 4.4 Consensus size: 23
137421 TGTTATTAAC
* *
137431 ACTTGTGTGTGCTCTCTGATTAGC
1 ACTT-TGTGTGCTCTCTGATGAGT
137455 ACTTTGTGTGCTCTCTGATGAGT
1 ACTTTGTGTGCTCTCTGATGAGT
137478 ACTTTGTGTGCTCTCTGATGAGT
1 ACTTTGTGTGCTCTCTGATGAGT
137501 ACTTTGTGTGCTCTCTGATGAGT
1 ACTTTGTGTGCTCTCTGATGAGT
137524 ACTTTGTGTG
1 ACTTTGTGTG
137534 TACTCTTTGT
Statistics
Matches: 77, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
23 73 0.95
24 4 0.05
ACGTcount: A:0.13, C:0.17, G:0.26, T:0.44
Consensus pattern (23 bp):
ACTTTGTGTGCTCTCTGATGAGT
Found at i:142905 original size:28 final size:28
Alignment explanation
Indices: 142872--142936 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
142862 CTAAAATTTA
* **
142872 TTTAAAATTACGTTTTAATCATTTAAT-T
1 TTTAAAATTACATAATAATCA-TTAATGT
*
142900 TTTAAACTTACATAATAATCATTAATGT
1 TTTAAAATTACATAATAATCATTAATGT
142928 TATTAAAAT
1 T-TTAAAAT
142937 ATTATATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 5 0.17
28 19 0.63
29 6 0.20
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.48
Consensus pattern (28 bp):
TTTAAAATTACATAATAATCATTAATGT
Found at i:143383 original size:13 final size:12
Alignment explanation
Indices: 143363--143394 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
143353 TCCAAGAAAA
143363 AACATTTTGACT
1 AACATTTTGACT
143375 AACCATTTTGACT
1 AA-CATTTTGACT
143388 AACATTT
1 AACATTT
143395 GAAGGTAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.41
Consensus pattern (12 bp):
AACATTTTGACT
Found at i:146682 original size:7 final size:7
Alignment explanation
Indices: 146670--146704 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
146660 CAACATGTTT
146670 TTTTTTC
1 TTTTTTC
146677 TTTTTTC
1 TTTTTTC
146684 TTTTTTC
1 TTTTTTC
146691 TTTTTTC
1 TTTTTTC
146698 TTTTTTC
1 TTTTTTC
146705 ACTTCCAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Found at i:147861 original size:37 final size:38
Alignment explanation
Indices: 147820--147918 Score: 92
Period size: 37 Copynumber: 2.6 Consensus size: 38
147810 TTCAAAGCAA
*
147820 TAAAGTGACACCCAGTGTCTCATCG-GCCTAGCCGAAG
1 TAAAGTGACACCCAGTGTCTCATCGAACCTAGCCGAAG
** ** * *
147857 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAGTGACACCCAGTGTCTCATCGAACCTAGCCGAAG
* * *
147895 TAAAATAATGACCCAGTGTCTCAT
1 TAAAGTGA-CACCCAGTGTCTCAT
147919 TGACTCAAGG
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
37 21 0.45
38 14 0.30
39 12 0.26
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (38 bp):
TAAAGTGACACCCAGTGTCTCATCGAACCTAGCCGAAG
Found at i:147918 original size:39 final size:37
Alignment explanation
Indices: 147829--147918 Score: 90
Period size: 38 Copynumber: 2.4 Consensus size: 37
147819 ATAAAGTGAC
* * **
147829 ACCCAGTGTCTCATCGGCCTAGCCGAAGTAAAGTGGT
1 ACCCAGTGTCTCATCGACCTAGCCGAAGTAAAATAAT
** * *
147866 ACCCAGTACCTCATCGAATCTATCCGAAGTAAAATAAT
1 ACCCAGTGTCTCATCG-ACCTAGCCGAAGTAAAATAAT
147904 GACCCAGTGTCTCAT
1 -ACCCAGTGTCTCAT
147919 TGACTCAAGG
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
37 14 0.34
38 15 0.37
39 12 0.29
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (37 bp):
ACCCAGTGTCTCATCGACCTAGCCGAAGTAAAATAAT
Found at i:148791 original size:14 final size:14
Alignment explanation
Indices: 148768--148802 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
148758 ATATATTAGT
148768 TAATAATAATAAAA
1 TAATAATAATAAAA
* *
148782 TAATACTAATTAAA
1 TAATAATAATAAAA
148796 TAATAAT
1 TAATAAT
148803 TTATATTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (14 bp):
TAATAATAATAAAA
Found at i:152821 original size:37 final size:37
Alignment explanation
Indices: 152767--152844 Score: 149
Period size: 37 Copynumber: 2.1 Consensus size: 37
152757 ACAATATTGC
152767 CTCA-GTGTATGCATCCATATCTGTTTTGAATTTGGT
1 CTCATGTGTATGCATCCATATCTGTTTTGAATTTGGT
152803 CTCATGTGTATGCATCCATATCTGTTTTGAATTTGGT
1 CTCATGTGTATGCATCCATATCTGTTTTGAATTTGGT
152840 CTCAT
1 CTCAT
152845 TTTTTTTTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 4 0.10
37 37 0.90
ACGTcount: A:0.19, C:0.18, G:0.18, T:0.45
Consensus pattern (37 bp):
CTCATGTGTATGCATCCATATCTGTTTTGAATTTGGT
Found at i:154949 original size:2 final size:2
Alignment explanation
Indices: 154942--154969 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
154932 ATTAACCCAA
154942 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
154970 TGCAAAGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:155405 original size:17 final size:17
Alignment explanation
Indices: 155383--155415 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
155373 ATTGAAAATT
155383 AAAAATTAAAAATTTTA
1 AAAAATTAAAAATTTTA
*
155400 AAAAATTATAAATTTT
1 AAAAATTAAAAATTTT
155416 TAGATTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAAATTAAAAATTTTA
Found at i:155757 original size:6 final size:6
Alignment explanation
Indices: 155746--155782 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
155736 CCAGAAAGAT
155746 GGATGG GGATGG GGATGG GGATGG GGATGG GGATGG G
1 GGATGG GGATGG GGATGG GGATGG GGATGG GGATGG G
155783 ACAACAAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.00, G:0.68, T:0.16
Consensus pattern (6 bp):
GGATGG
Found at i:169754 original size:59 final size:59
Alignment explanation
Indices: 169686--169827 Score: 173
Period size: 58 Copynumber: 2.4 Consensus size: 59
169676 CTATGGGTTG
*
169686 GCAAACACCCAAAAAATATATTTTTGGTATTTGAAAAAGAA-AGTGACAACCATGACTTA
1 GCAAACACCCAAAAAATATATTTTTGGTATCTGAAAAAGAAGA-TGACAACCATGACTTA
* * * * * **
169745 GCAGACACCC-AAAAATGTTTTTTTGGTATCTGAAAAAGGAGATGTCGGCCATGACTTA
1 GCAAACACCCAAAAAATATATTTTTGGTATCTGAAAAAGAAGATGACAACCATGACTTA
169803 GCAAACACCCAAAAAA-ATAATTTTT
1 GCAAACACCCAAAAAATAT-ATTTTT
169828 ATTCGTATTT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
58 49 0.71
59 20 0.29
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (59 bp):
GCAAACACCCAAAAAATATATTTTTGGTATCTGAAAAAGAAGATGACAACCATGACTTA
Found at i:174206 original size:2 final size:2
Alignment explanation
Indices: 174201--174226 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
174191 ATATATATAT
174201 AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC
174227 GAGTGAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:174980 original size:24 final size:24
Alignment explanation
Indices: 174929--174983 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
174919 TCTTTTAGTT
*
174929 AAACTCTATTTATTTGTTTCAATT
1 AAACTCTATTTATTTGTTTCAATC
* * *
174953 AAACTCTGTTTATTTGTTTGAGTC
1 AAACTCTATTTATTTGTTTCAATC
174977 AAACTCT
1 AAACTCT
174984 TATTAATCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (24 bp):
AAACTCTATTTATTTGTTTCAATC
Done.