Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011433.1 Kokia drynarioides strain JFW-HI SEQ_126417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2684
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35


Found at i:2306 original size:8 final size:9

Alignment explanation


    Indices: 2273--2303  Score: 62
    Period size: 9  Copynumber: 3.4  Consensus size: 9

       2263 CAATTTAGAT

                     
       2273 TTTTTAAAA
          1 TTTTTAAAA

                     
       2282 TTTTTAAAA
          1 TTTTTAAAA

                     
       2291 TTTTTAAAA
          1 TTTTTAAAA

                
       2300 TTTT
          1 TTTT

       2304 AAATTAGTAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61


Consensus pattern (9 bp):   
TTTTTAAAA
Done.