Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011435.1 Kokia drynarioides strain JFW-HI SEQ_126419, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1773
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35


Found at i:281 original size:17 final size:16

Alignment explanation


    Indices: 259--293  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 16

        249 TGACTTTTTC

                        *    
        259 TTCCTTTTTCTTTCTTT
          1 TTCCTTTTT-TTACTTT

                            
        276 TTCCTTTTTTTACTTT
          1 TTCCTTTTTTTACTTT

              
        292 TT
          1 TT

        294 TATTGGGTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    8  0.47
  17    9  0.53

ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77


Consensus pattern (16 bp):   
TTCCTTTTTTTACTTT

Found at i:294 original size:17 final size:18

Alignment explanation


    Indices: 254--294  Score: 50
    Period size: 17  Copynumber: 2.3  Consensus size: 18

        244 CATCTTGACT

                             * 
        254 TTTTCTTCCTTTTTCTTTC
          1 TTTT-TTCCTTTTTCTTAC

                              
        273 -TTTTTCCTTTTT-TTAC
          1 TTTTTTCCTTTTTCTTAC

                  
        289 TTTTTT
          1 TTTTTT

        295 ATTGGGTTTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 4
        0.80            0.04        0.16

Matches are distributed among these distances:
  16    3  0.15
  17   14  0.70
  18    3  0.15

ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78


Consensus pattern (18 bp):   
TTTTTTCCTTTTTCTTAC
Done.