Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011436.1 Kokia drynarioides strain JFW-HI SEQ_126420, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5166
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34


Found at i:206 original size:37 final size:38

Alignment explanation


    Indices: 165--243  Score: 151
    Period size: 38  Copynumber: 2.1  Consensus size: 38

        155 ATAGAAATCC

                                                  
        165 CTAAATGATACTAATATCTC-TTCGAGCATAAGAGAAA
          1 CTAAATGATACTAATATCTCTTTCGAGCATAAGAGAAA

                                                  
        202 CTAAATGATACTAATATCTCTTTCGAGCATAAGAGAAA
          1 CTAAATGATACTAATATCTCTTTCGAGCATAAGAGAAA

                
        240 CTAA
          1 CTAA

        244 CTCTAGGTTG


Statistics
Matches: 41,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  37   20  0.49
  38   21  0.51

ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28


Consensus pattern (38 bp):   
CTAAATGATACTAATATCTCTTTCGAGCATAAGAGAAA

Found at i:4640 original size:13 final size:13

Alignment explanation


    Indices: 4622--4656  Score: 52
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       4612 TTGATTAGAA

                         
       4622 TTTAGTTTTTAAG
          1 TTTAGTTTTTAAG

                       **
       4635 TTTAGTTTTTATT
          1 TTTAGTTTTTAAG

                     
       4648 TTTAGTTTT
          1 TTTAGTTTT

       4657 GAAACGAGAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.17, C:0.00, G:0.11, T:0.71


Consensus pattern (13 bp):   
TTTAGTTTTTAAG
Done.