genome.fa.s11438.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011438.1 Kokia drynarioides strain JFW-HI SEQ_126422, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86404

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5387--5421	16	2.2	16	94	0	61	20	5	17	57	1.60
6664--6765	46	2.3	46	83	6	120	35	19	21	23	1.96
7552--8134	68	8.6	68	73	8	326	31	20	16	31	1.95
7686--7767	32	2.6	32	86	7	105	28	23	21	26	1.99
7754--7839	36	2.4	36	86	3	120	27	18	19	33	1.96
8010--8181	68	2.5	69	78	6	179	33	19	16	30	1.95
8867--8937	30	2.3	31	78	9	74	39	15	12	32	1.85
10228--10264	11	3.2	12	85	14	51	75	0	0	24	0.80
20389--20467	35	2.1	35	81	9	86	49	2	15	32	1.58
27052--27106	23	2.4	23	96	0	101	38	0	43	18	1.50
37575--37755	52	3.5	51	83	4	211	38	21	13	27	1.90
39418--39509	48	1.9	48	86	0	130	21	16	23	38	1.93
39417--39690	47	5.8	46	77	6	203	25	14	21	37	1.92
39466--39690	94	2.4	94	80	8	237	25	15	21	37	1.93
39544--39857	167	1.9	166	83	7	404	25	13	22	38	1.91
39695--40005	94	3.3	92	80	3	336	24	14	24	36	1.93
39708--39998	47	6.2	46	78	6	253	25	13	23	37	1.92
39695--40005	141	2.2	141	80	7	348	24	14	24	36	1.93
39965--40176	84	2.5	84	79	4	201	25	14	27	33	1.95
40071--40176	42	2.5	42	92	0	176	24	10	33	31	1.89
42195--42226	14	2.2	14	94	5	55	0	15	0	84	0.63
42194--42230	12	3.2	12	82	17	51	0	16	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43098--43131	15	2.1	16	89	10	52	44	11	20	23	1.84
47151--47265	56	2.1	56	96	0	212	31	8	4	55	1.50
48714--48901	28	6.8	28	75	6	148	52	7	16	22	1.69
48714--48901	56	3.4	56	80	7	170	52	7	16	22	1.69
59620--59813	87	2.2	87	84	8	259	37	3	24	34	1.71
59620--59864	29	8.4	29	77	10	187	35	3	25	35	1.73
59623--59861	87	2.7	85	82	7	248	35	3	25	35	1.73
61966--62117	76	2.0	76	98	0	295	25	13	26	34	1.93
65509--65671	84	1.9	85	83	2	211	38	14	22	23	1.92
65800--65891	48	1.9	48	84	0	121	41	11	20	26	1.87
65509--66212	209	3.4	208	83	4	843	39	16	21	23	1.92
66528--66561	14	2.3	15	90	5	52	47	20	8	23	1.78
68156--68344	30	6.4	29	82	5	119	34	30	2	32	1.70
68168--68413	60	4.2	60	80	5	254	33	30	2	34	1.71
68219--68414	30	6.6	31	82	8	196	34	28	1	36	1.67
71575--71763	29	6.5	29	74	18	160	34	4	27	32	1.78
71538--71698	30	5.5	30	68	20	99	37	5	26	31	1.79
71534--71727	59	3.3	59	87	2	275	36	5	26	31	1.79
71687--71773	28	3.1	28	86	3	122	34	2	29	33	1.70
71686--71784	29	3.5	28	82	9	119	36	2	27	34	1.69
71766--71822	29	2.0	29	82	0	69	35	7	26	31	1.83
77216--77261	20	2.3	20	84	0	65	13	21	32	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84922--85022	40	2.6	38	80	12	107	55	2	4	36	1.37
84929--85020	36	2.6	36	84	3	114	56	3	5	34	1.38

Tables:   1

The End!