Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011440.1 Kokia drynarioides strain JFW-HI SEQ_126424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50823
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Warning! 50 characters in sequence are not A, C, G, or T
Found at i:45 original size:4 final size:4
Alignment explanation
Indices: 38--88 Score: 77
Period size: 4 Copynumber: 12.8 Consensus size: 4
28 TCCTTCTTCC
*
38 TTCT TTCT TTCT TTCT TTCT TTCT TTCT CTTTT TTCT TTCT TT-T TTCT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT -TTCT TTCT TTCT TTCT TTCT
86 TTC
1 TTC
89 ATTTTTCGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 3 0.07
4 37 0.86
5 3 0.07
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:93 original size:12 final size:11
Alignment explanation
Indices: 38--95 Score: 75
Period size: 11 Copynumber: 5.3 Consensus size: 11
28 TCCTTCTTCC
38 TTCTTTCTTTCT
1 TTCTTTCTTT-T
50 TTCTTTCTTTCT
1 TTCTTTCTTT-T
62 TTC--TCTTTT
1 TTCTTTCTTTT
71 TTCTTTCTTTT
1 TTCTTTCTTTT
*
82 TTCTTTCATTT
1 TTCTTTCTTTT
93 TTC
1 TTC
96 GTTGGTCCCC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
9 4 0.09
10 5 0.12
11 19 0.44
12 15 0.35
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (11 bp):
TTCTTTCTTTT
Found at i:21982 original size:16 final size:18
Alignment explanation
Indices: 21957--21993 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
21947 AAATGAAACT
*
21957 AAAATGAGAA-TGATATG
1 AAAATGAGAATTGAGATG
21974 AAAAT-AGAATTGAGATG
1 AAAATGAGAATTGAGATG
21991 AAA
1 AAA
21994 CAGATTATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.22, T:0.22
Consensus pattern (18 bp):
AAAATGAGAATTGAGATG
Found at i:21991 original size:22 final size:22
Alignment explanation
Indices: 21944--21993 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
21934 TGATTTGATT
*
21944 ATGAAATGAAACTAAAATGAGA
1 ATGAAATGAAAATAAAATGAGA
* *
21966 ATGATATGAAAATAGAATTGAG-
1 ATGAAATGAAAATA-AAATGAGA
21988 ATGAAA
1 ATGAAA
21994 CAGATTATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 17 0.74
23 6 0.26
ACGTcount: A:0.56, C:0.02, G:0.20, T:0.22
Consensus pattern (22 bp):
ATGAAATGAAAATAAAATGAGA
Found at i:23515 original size:23 final size:23
Alignment explanation
Indices: 23488--23541 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
23478 AACAAAATAA
23488 AAAATTTAAATTTAAAAAGACTT
1 AAAATTTAAATTTAAAAAGACTT
**
23511 AAAATATT-TTTTTAAAAAGACTT
1 AAAAT-TTAAATTTAAAAAGACTT
*
23534 AAATTTTA
1 AAAATTTA
23542 TTTTTGTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 2 0.08
23 22 0.85
24 2 0.08
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.41
Consensus pattern (23 bp):
AAAATTTAAATTTAAAAAGACTT
Found at i:23537 original size:22 final size:24
Alignment explanation
Indices: 23498--23546 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
23488 AAAATTTAAA
23498 TTTAAAAAGACTTAAAATATT-TT
1 TTTAAAAAGACTTAAAATATTATT
*
23521 TTTAAAAAGACTT-AAATTTTATT
1 TTTAAAAAGACTTAAAATATTATT
23544 TTT
1 TTT
23547 GTTAAGGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (24 bp):
TTTAAAAAGACTTAAAATATTATT
Found at i:23728 original size:60 final size:58
Alignment explanation
Indices: 23565--23754 Score: 236
Period size: 59 Copynumber: 3.2 Consensus size: 58
23555 TTAATATAAT
* * *
23565 ATTTGGTACTTAAACTTGACACTTTTTCTTAATTTGGTACCTAAACTTTTTTTGACCCA
1 ATTTGGTACCTGAACTTGACACTTTTTTTTAATTT-GTACCTAAACTTTTTTTGACCCA
* * * *
23624 ATTTGGTACTTGAAATTGACACTTTTTTTAAATTTGATATCTAAACTTTTTTTGACCCA
1 ATTTGGTACCTGAACTTGACACTTTTTTTTAATTTG-TACCTAAACTTTTTTTGACCCA
* * * *
23683 ATTTGATACCTGAACTTGACATTTTTTTTCTAATTTCGTACCTAAACTTTTTTTAGATCTA
1 ATTTGGTACCTGAACTTGACACTTTTTTT-TAATTT-GTACCTAAACTTTTTTT-GACCCA
23744 ATTTGGTACCT
1 ATTTGGTACCT
23755 AAATTTATTA
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
58 1 0.01
59 77 0.68
60 20 0.18
61 15 0.13
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.47
Consensus pattern (58 bp):
ATTTGGTACCTGAACTTGACACTTTTTTTTAATTTGTACCTAAACTTTTTTTGACCCA
Found at i:23956 original size:58 final size:58
Alignment explanation
Indices: 23893--24004 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
23883 AATTAATATT
* * * * *
23893 AAAAAAATTAGGTACCAAATTAG-GAAAATTGGTCAAGTTCAGGTACTAAATTAGACCCC
1 AAAAAGATTAAGTA-CAAATTAGAAAAAAGT-GTCAAGTTCAGGTACCAAATTAGACCCC
* *
23952 AAAAAGTTTAAGTACAAATTAGAAAAAAGTGTCAAGTTTAGGTACCAAATTAG
1 AAAAAGATTAAGTACAAATTAGAAAAAAGTGTCAAGTTCAGGTACCAAATTAG
24005 GAAAAGATGT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
58 29 0.64
59 16 0.36
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (58 bp):
AAAAAGATTAAGTACAAATTAGAAAAAAGTGTCAAGTTCAGGTACCAAATTAGACCCC
Found at i:23991 original size:30 final size:31
Alignment explanation
Indices: 23955--24026 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
23945 AGACCCCAAA
23955 AAGTTTAAGTA-CAAATTAGAAAAA-AGTGTC
1 AAGTTTAAGTACCAAATTAGAAAAAGA-TGTC
* *
23985 AAGTTTAGGTACCAAATTAGGAAAAGATGTC
1 AAGTTTAAGTACCAAATTAGAAAAAGATGTC
*
24016 AAGTTTGAGTA
1 AAGTTTAAGTA
24027 TTAAATTGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 10 0.28
31 25 0.69
32 1 0.03
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAGAAAAAGATGTC
Found at i:24067 original size:89 final size:89
Alignment explanation
Indices: 23900--24086 Score: 236
Period size: 89 Copynumber: 2.1 Consensus size: 89
23890 ATTAAAAAAA
* ** *
23900 TTAGGTACCAAATTAGGAAAATTGGTCAAGTTCAGGTACTAAATTAGACCCCAAAAAGTTTAAGT
1 TTAGGTACCAAATTAGGAAAAATGGTCAAGTTCAGGTACTAAATTAGACCAAAAAAAATTTAAGT
*
23965 ACAAATTAGAAAAAAGTGTCAAGT
66 ACAAATTAGAAAAAAATGTCAAGT
* * * *
23989 TTAGGTACCAAATTAGGAAAAGAT-GTCAAGTT-TGAGTATTAAATTGGACCAAAAAAAATTTAG
1 TTAGGTACCAAATTAGGAAAA-ATGGTCAAGTTCAG-GTACTAAATTAGACCAAAAAAAATTTAA
24052 GTATCAAATTA-AAAAAAATGTCAAGT
64 GTA-CAAATTAGAAAAAAATGTCAAGT
*
24078 TCAGGTACC
1 TTAGGTACC
24087 GAATATTATA
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
88 1 0.01
89 76 0.89
90 8 0.09
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (89 bp):
TTAGGTACCAAATTAGGAAAAATGGTCAAGTTCAGGTACTAAATTAGACCAAAAAAAATTTAAGT
ACAAATTAGAAAAAAATGTCAAGT
Found at i:27404 original size:1 final size:1
Alignment explanation
Indices: 27398--27422 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
27388 ATTAAATGCC
27398 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
27423 CAAATTTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:28335 original size:19 final size:19
Alignment explanation
Indices: 28311--28350 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
28301 TAAATATAGT
*
28311 TTAAATATTAATTTTTTTC
1 TTAAATATTAACTTTTTTC
28330 TTAAATATTAACTTTTTTC
1 TTAAATATTAACTTTTTTC
28349 TT
1 TT
28351 TCATCCACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAAATATTAACTTTTTTC
Found at i:34193 original size:11 final size:11
Alignment explanation
Indices: 34190--34241 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
34180 TTATTTTAAA
*
34190 TTTAAATTTGT
1 TTTAAATTTAT
*
34201 TTTAAATTTAAA
1 TTTAAATTT-AT
* *
34213 TTTAAATTAAG
1 TTTAAATTTAT
34224 TTTAAATTTACT
1 TTTAAATTTA-T
34236 TTTAAA
1 TTTAAA
34242 ATTAAAATTA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
11 19 0.58
12 14 0.42
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:34195 original size:6 final size:6
Alignment explanation
Indices: 34156--34264 Score: 70
Period size: 6 Copynumber: 19.0 Consensus size: 6
34146 TAAAATCCTT
* **
34156 TTTAAA TTT--A TTATAAGA TTT-AA TTT-AT TTTAAA TTTAAA TTT-GT
1 TTTAAA TTTAAA TT-TAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* ** *
34201 TTTAAA TTTAAA TTTAAA -TTAAG TTTAAA TTTACT TTTAAA ATTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
34248 ATT-AT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA
34265 AAGTCTCATT
Statistics
Matches: 79, Mismatches: 16, Indels: 16
0.71 0.14 0.14
Matches are distributed among these distances:
4 3 0.04
5 19 0.24
6 53 0.67
7 1 0.01
8 3 0.04
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:34214 original size:23 final size:23
Alignment explanation
Indices: 34184--34264 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 23
34174 TTTAATTTAT
*
34184 TTTAAATTTAAATT-TGTTTTAAA
1 TTTAAATTTAAATTAAG-TTTAAA
34207 TTTAAATTTAAATTAAGTTTAAA
1 TTTAAATTTAAATTAAGTTTAAA
** ** *
34230 TTTACTTTTAAAATTAAAATT-AT
1 TTTAAATTT-AAATTAAGTTTAAA
34253 TTTAAATTTAAA
1 TTTAAATTTAAA
34265 AAGTCTCATT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
22 3 0.06
23 35 0.73
24 10 0.21
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (23 bp):
TTTAAATTTAAATTAAGTTTAAA
Found at i:34233 original size:29 final size:29
Alignment explanation
Indices: 34201--34264 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
34191 TTAAATTTGT
*
34201 TTTAAATTT-AAATTTAAATTAAGTTTAAA
1 TTTAAATTTAAAATTAAAATT-AGTTTAAA
** *
34230 TTTACTTTTAAAATTAAAATTATTTTAAA
1 TTTAAATTTAAAATTAAAATTAGTTTAAA
34259 TTTAAA
1 TTTAAA
34265 AAGTCTCATT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (29 bp):
TTTAAATTTAAAATTAAAATTAGTTTAAA
Found at i:34265 original size:17 final size:17
Alignment explanation
Indices: 34156--34264 Score: 130
Period size: 17 Copynumber: 6.4 Consensus size: 17
34146 TAAAATCCTT
*
34156 TTTAAATTTATTATAAGA
1 TTTAAATTTATTTTAA-A
34174 TTT-AATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
34190 TTTAAATTTGTTTTAAA
1 TTTAAATTTATTTTAAA
** *
34207 TTTAAATTTAAATTAAG
1 TTTAAATTTATTTTAAA
34224 TTTAAATTTACTTTTAAA
1 TTTAAATTTA-TTTTAAA
* *
34242 ATTAAAATTATTTTAAA
1 TTTAAATTTATTTTAAA
34259 TTTAAA
1 TTTAAA
34265 AAGTCTCATT
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
16 4 0.05
17 58 0.75
18 15 0.19
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:36085 original size:29 final size:28
Alignment explanation
Indices: 36037--36270 Score: 236
Period size: 29 Copynumber: 8.0 Consensus size: 28
36027 CCCTAAAGGT
*
36037 CCCTAAACTATTCAAAAATTCCATTTTTA
1 CCCTAAACT-TCCAAAAATTCCATTTTTA
* *
36066 CTCCTAAACTTCCAAAAATTACATTTTCA
1 C-CCTAAACTTCCAAAAATTCCATTTTTA
** *
36095 CACCCGAACTTCTAAAAATTCCATTTTTGA
1 C-CCTAAACTTCCAAAAATTCCATTTTT-A
36125 CCCTAAAACTTCCAAAAATTCCATTTTTGA
1 CCCT-AAACTTCCAAAAATTCCATTTTT-A
* *
36155 CCCTCAAAC-TCCCAAAATTCCATTTTAA
1 CCCT-AAACTTCCAAAAATTCCATTTTTA
* * * *
36183 CCCCCAAAACTTTCAAAAATTCTATTTTCA
1 --CCCTAAACTTCCAAAAATTCCATTTTTA
36213 CCCTCAAACTTCCAAAAATTCCATTTTTTA
1 CCCT-AAACTTCCAAAAATTCCA-TTTTTA
*
36243 CCCTAAAGCTTTCAAAAATTCCATTTTT
1 CCCTAAA-CTTCCAAAAATTCCATTTTT
36271 GTCCTCGAAA
Statistics
Matches: 171, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
28 4 0.02
29 85 0.50
30 82 0.48
ACGTcount: A:0.35, C:0.28, G:0.02, T:0.35
Consensus pattern (28 bp):
CCCTAAACTTCCAAAAATTCCATTTTTA
Found at i:36151 original size:59 final size:58
Alignment explanation
Indices: 36049--36269 Score: 268
Period size: 59 Copynumber: 3.8 Consensus size: 58
36039 CTAAACTATT
* *
36049 CAAAAATTCCATTTTTACTCCT-AAACTTCCAAAAATTACATTTTCACACC-CGAACTTC
1 CAAAAATTCCATTTTTAC-CCTAAAACTTCCAAAAATTCCATTTTCAC-CCTCAAACTTC
* *
36107 TAAAAATTCCATTTTTGACCCTAAAACTTCCAAAAATTCCATTTTTGACCCTCAAAC-TC
1 CAAAAATTCCATTTTT-ACCCTAAAACTTCCAAAAATTCCA-TTTTCACCCTCAAACTTC
* * * * *
36166 CCAAAATTCCATTTTAACCCCCAAAACTTTCAAAAATTCTATTTTCACCCTCAAACTTC
1 CAAAAATTCCATTTTTA-CCCTAAAACTTCCAAAAATTCCATTTTCACCCTCAAACTTC
* *
36225 CAAAAATTCCATTTTTTACCCTAAAGCTTTCAAAAATTCCATTTT
1 CAAAAATTCCA-TTTTTACCCTAAAACTTCCAAAAATTCCATTTT
36270 TGTCCTCGAA
Statistics
Matches: 140, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
58 33 0.24
59 92 0.66
60 15 0.11
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (58 bp):
CAAAAATTCCATTTTTACCCTAAAACTTCCAAAAATTCCATTTTCACCCTCAAACTTC
Found at i:36423 original size:58 final size:59
Alignment explanation
Indices: 36320--36432 Score: 183
Period size: 58 Copynumber: 1.9 Consensus size: 59
36310 TAAAATTTTT
* *
36320 ATTTTTGACCTTAAAACTTTCAAAAATTACCATTTTACCCTCAAATGTCCAAAAACTCC
1 ATTTTTGACCTCAAAACTATCAAAAATTACCATTTTACCCTCAAATGTCCAAAAACTCC
* *
36379 ATTTTTGACCTCAAAACTATC-AAAATTACCCTTTTACCCTCAAATGTCTAAAAA
1 ATTTTTGACCTCAAAACTATCAAAAATTACCATTTTACCCTCAAATGTCCAAAAA
36433 TTTTCTTTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
58 31 0.62
59 19 0.38
ACGTcount: A:0.38, C:0.25, G:0.04, T:0.34
Consensus pattern (59 bp):
ATTTTTGACCTCAAAACTATCAAAAATTACCATTTTACCCTCAAATGTCCAAAAACTCC
Found at i:36432 original size:29 final size:29
Alignment explanation
Indices: 36341--36434 Score: 93
Period size: 29 Copynumber: 3.2 Consensus size: 29
36331 TAAAACTTTC
*
36341 AAAAATTACCATTTTACCCTCAAATGTCC
1 AAAAATTACCATTTTACCCTCAAATGTCT
* ** *
36370 AAAAACT-CCATTTTTGA-CCTCAAAACTAT
1 AAAAATTACCA-TTTT-ACCCTCAAATGTCT
* *
36399 CAAAATTACCCTTTTACCCTCAAATGTCT
1 AAAAATTACCATTTTACCCTCAAATGTCT
36428 AAAAATT
1 AAAAATT
36435 TTCTTTTTAA
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
28 4 0.08
29 42 0.86
30 3 0.06
ACGTcount: A:0.39, C:0.26, G:0.03, T:0.32
Consensus pattern (29 bp):
AAAAATTACCATTTTACCCTCAAATGTCT
Found at i:36442 original size:58 final size:59
Alignment explanation
Indices: 36308--36442 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 59
36298 CCCCCGAACC
* * * *
36308 TCTAAAATTTTTATTTTTGACCTTAAAACTTTCAAAAATTACCATTTTACCCTCAAATG
1 TCTAAAAATTTTCTTTTTGACCTCAAAACTATCAAAAATTACCATTTTACCCTCAAATG
* * * *
36367 TCCAAAAA-CTCCATTTTTGACCTCAAAACTATC-AAAATTACCCTTTTACCCTCAAATG
1 TCTAAAAATTTTC-TTTTTGACCTCAAAACTATCAAAAATTACCATTTTACCCTCAAATG
36425 TCTAAAAATTTTCTTTTT
1 TCTAAAAATTTTCTTTTT
36443 AACCCCGAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
58 37 0.59
59 26 0.41
ACGTcount: A:0.35, C:0.22, G:0.03, T:0.40
Consensus pattern (59 bp):
TCTAAAAATTTTCTTTTTGACCTCAAAACTATCAAAAATTACCATTTTACCCTCAAATG
Found at i:48279 original size:205 final size:205
Alignment explanation
Indices: 47925--49464 Score: 1907
Period size: 205 Copynumber: 7.5 Consensus size: 205
47915 CCAACTCAAG
* * * *
47925 GCTCGATGTGAGCAAATCTTCGAATCCCAGCTTCCTGATGAGATACTGAGAAGCAGGGGGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGTGAAGCA
* * * *
47990 ATAAAAGGTTAACTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCTTGATGAGACAT
66 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
* **
48055 TGAGAAGCGAATTGAAACAAACGACGCAACCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
131 AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
48120 TCAAACCCAC
196 TCAAACCCAC
* * *
48130 GTTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATATTGAAAAGCAGGGTGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGTGAAGCA
* *
48195 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTAGAACAAATTCGTCTTCCTGATGAGATAC
66 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
*********************************
48260 AGAGAAGCGAATTGAAACAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
131 AGAGAAGCGAATTGAAACAAAC----------GACGCAGTCATCTTCCTGATGAGATACTGAGAA
*******
48325 NNNNNNNAAATCAAACCCAC
186 GAAGACCAAATCAAACCCAC
* * * *
48345 GCTCGATGTGAGTAAATCTTCGAACCCCAGCTTCTTGATGAGACACTGAAAAGCAGGGCGAAACA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGTGAAGCA
* *
48410 ATAAAAGGTTAGCTTCCTGATGAGATACTAAGAAGTTGACCAAATTCGTCTTCCTGATGAGATAC
66 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
* * * * *
48475 AGAAAAGTGAATTGAAACAAAAGACGCAGTCATCTTCCTAATGAGATACTAAGAAGAAGACCAAA
131 AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
48540 TCAAACCCAC
196 TCAAACCCAC
* * *
48550 GCTCGATGTGAGCAAATCTTCGAACCCCAACTTCCTGATGAGACACTGAGAAGTA-GGTCGAAGC
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGT-GAAGC
* * * *
48614 AATAAAAGGTCAGCTTCTTGATGAGATATTGAGAAGTGGAACAAATTCGTCTTCCTGATGAGATA
65 AATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
*
48679 CAGAGAAGCGAATTGAAACAAATGACGC-GATCATCTTCCTGATGAGATACTGAGAAGAAGACCA
130 CAGAGAAGCGAATTGAAACAAACGACGCAG-TCATCTTCCTGATGAGATACTGAGAAGAAGACCA
48743 AATCAAACCCAC
194 AATCAAACCCAC
* * *
48755 GCTCGATGTGAGTAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGCGAAACA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGTGAAGCA
* * * *
48820 ATAAAAGGTTAGCTTCCTGATGAGATATTGAGAAGTTGACCAAATTTGTCTTCCTGATGAGAT-T
66 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
* *
48884 AGAAAAGCGAATTGAAACAAACGACACAGTCATCTTCCTGATGAGATACT-ACGAAGAAGACCAA
131 AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGA-GAAGAAGACCAA
48948 ATCAAACCCAC
195 ATCAAACCCAC
* *
48959 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGTA-GGTCGAAGC
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGT-GAAGC
* * * *
49023 AATAAAAGGTCAGCTTACTGATGAGATATTGAGAAGTGGACCAAATTCGTCTTCCTGAAGAGATA
65 AATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
* * *
49088 CAGAGAAGCGAATTGAAACAAATGACGCGGTCATCTTCTTGATGAGATACTGAGAAGAA-AGCCA
130 CAGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGA-CCA
49152 AATCAAACCCAC
194 AATCAAACCCAC
* * *
49164 GCTCGA-GT----AAATCTTCGAACCTCAACTTCCTGATGAGACACTGAAAAGCA-AGTCGAAGC
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGT-GAAGC
* * *
49223 AATAAAAGGTCAACTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATA
65 AATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
*
49288 CAGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTAATGAGATACTGAGAAGAAGACCAA
130 CAGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAA
*
49353 ATCAAACCCAA
195 ATCAAACCCAC
* *
49364 GCTCGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGCGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGTGAAGCA
* *
49429 ATAAAAAGTTAGCTTCCTGATGAGATACAGAGAAGT
66 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGT
49465 ATACCAACTC
Statistics
Matches: 1131, Mismatches: 178, Indels: 52
0.83 0.13 0.04
Matches are distributed among these distances:
200 181 0.16
201 3 0.00
203 3 0.00
204 189 0.17
205 599 0.53
206 4 0.00
215 152 0.13
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.20
Consensus pattern (205 bp):
GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGTGAAGCA
ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
TCAAACCCAC
Found at i:49509 original size:114 final size:114
Alignment explanation
Indices: 49364--49578 Score: 351
Period size: 114 Copynumber: 1.9 Consensus size: 114
49354 TCAAACCCAA
*
49364 GCTCGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGCGAAGCA
1 GCTCGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATAAGACACTGAAAAGCAGGGCGAAGCA
*
49429 ATAAAAAGTTAGCTTCCTGATGAGATAC-AGAGAAGTATACCAACTCAAG
66 ATAAAAAGTTAACTTCCTGATGAGATACTA-AGAAGTATACCAACTCAAG
* * * *
49478 GCTCGATGTGAGCAAATCTTCGAATCTCAGCTTCCTGATAAGACACTGAGAAGCAGGGCGAAGCA
1 GCTCGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATAAGACACTGAAAAGCAGGGCGAAGCA
*
49543 ATAAAAGGTTAACTTCCTGATGAGATACTAAGAAGT
66 ATAAAAAGTTAACTTCCTGATGAGATACTAAGAAGT
49579 GGACCAAATT
Statistics
Matches: 93, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
114 92 0.99
115 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (114 bp):
GCTCGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATAAGACACTGAAAAGCAGGGCGAAGCA
ATAAAAAGTTAACTTCCTGATGAGATACTAAGAAGTATACCAACTCAAG
Found at i:49567 original size:319 final size:319
Alignment explanation
Indices: 49172--49784 Score: 1019
Period size: 319 Copynumber: 1.9 Consensus size: 319
49162 ACGCTCGAGT
* *
49172 AAATCTTCGAACCTCAACTTCCTGATGAGACACTGAAAAGCAAGTCGAAGCAATAAAAGGTCAAC
1 AAATCTTCGAACCTCAACTTCCTGATAAGACACTGAAAAGCAAGGCGAAGCAATAAAAGGTCAAC
* * *
49237 TTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAGCGAATT
66 TTCCTGATGAGATACTAAGAAGTGGACCAAATTCGACTTCCGAATGAGATACAGAGAAGCGAATT
49302 GAAACAAACGACGCAGTCATCTTCCTAATGAGATACTGAGAAGAAGACCAAATCAAACCCAAGCT
131 GAAACAAACGACGCAGTCATCTTCCTAATGAGATACTGAGAAGAAGACCAAATCAAACCCAAGCT
*
49367 CGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAGGGCGAAGCAATA
196 CGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGCGAAGCAATA
49432 AAAAGTTAGCTTCCTGATGAGATACAGAGAAGTATACCAACTCAAGGCTCGATGTGAGC
261 AAAAGTTAGCTTCCTGATGAGATACAGAGAAGTATACCAACTCAAGGCTCGATGTGAGC
* * * * *
49491 AAATCTTCGAATCTCAGCTTCCTGATAAGACACTGAGAAGCAGGGCGAAGCAATAAAAGGTTAAC
1 AAATCTTCGAACCTCAACTTCCTGATAAGACACTGAAAAGCAAGGCGAAGCAATAAAAGGTCAAC
* *
49556 TTCCTGATGAGATACTAAGAAGTGGACCAAATTCGACTTCCGGATGAGATACTGAGAAGCGAATT
66 TTCCTGATGAGATACTAAGAAGTGGACCAAATTCGACTTCCGAATGAGATACAGAGAAGCGAATT
* * *
49621 GAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACTCATGCT
131 GAAACAAACGACGCAGTCATCTTCCTAATGAGATACTGAGAAGAAGACCAAATCAAACCCAAGCT
* * * * *
49686 TGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGTAAGGTGAAGCAATG
196 CGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGCGAAGCAATA
* *
49751 AAAGGTTAGCTTCCTGATGAGATACTGAGAAGTA
261 AAAAGTTAGCTTCCTGATGAGATACAGAGAAGTA
49785 GAACAAATTC
Statistics
Matches: 271, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
319 271 1.00
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (319 bp):
AAATCTTCGAACCTCAACTTCCTGATAAGACACTGAAAAGCAAGGCGAAGCAATAAAAGGTCAAC
TTCCTGATGAGATACTAAGAAGTGGACCAAATTCGACTTCCGAATGAGATACAGAGAAGCGAATT
GAAACAAACGACGCAGTCATCTTCCTAATGAGATACTGAGAAGAAGACCAAATCAAACCCAAGCT
CGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGCGAAGCAATA
AAAAGTTAGCTTCCTGATGAGATACAGAGAAGTATACCAACTCAAGGCTCGATGTGAGC
Found at i:49834 original size:205 final size:205
Alignment explanation
Indices: 49478--50822 Score: 1961
Period size: 205 Copynumber: 6.6 Consensus size: 205
49468 CCAACTCAAG
* * * * * *
49478 GCTCGATGTGAGCAAATCTTCGAATCTCAGCTTCCTGATAAGACACTGAGAAGCAGGGCGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGTGAAGCA
* * * *
49543 ATAAAAGGTTAACTTCCTGATGAGATACTAAGAAGTGGACCAAATTCGACTTCCGGATGAGATAC
66 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
*
49608 TGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
131 AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
* *
49673 TCAAACTCAT
196 TCAAACCCAC
* *
49683 GCTTGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGTAAGGTGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGTGAAGCA
* * *
49748 ATGAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTAGAACAAATTCGTCTTCCTGATGAGATAC
66 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
*
49813 AGAGAAGCGAATTGAAACAAACGACGCAATCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
131 AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
49878 TCAAACCCAC
196 TCAAACCCAC
* * * * * *
49888 GCTCGATGTGAGTAAATCTTCGAACCCCAGCTTCTTGATGAAACACTGAAAAGCAGGGCGAAACA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGTGAAGCA
* * * *
49953 ATAAAAGGTTAGCTTCCTGATGAGATACTGATAAGTTGATCAAATTCGTCTTCCTGATAAGATAC
66 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
* * * *
50018 AGAAAAGCGAATTGAAACAAACGACACAGTCATCTTCTTGATGAGATACTAAGAAGAAGACCAAA
131 AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
50083 TCAAACCCAC
196 TCAAACCCAC
* * * *
50093 ACTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAG-TAGGTCGAAGT
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGT-GAAGC
* * * *
50157 AATAAAAGGTCAGTTTTCTGATGAGATATTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
65 AATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
* * * * *
50222 CAAAGAAGCGAATTGAAACAAATGACGCGGTCATCTTCCTGATGAGATACTGAAAAGAATACCAA
130 CAGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAA
50287 ATCAAACCCAC
195 ATCAAACCCAC
* * * * * *
50298 GCTCGATGTGAGTAAATCTTCGAACCCCAGCTTCCTAATGAGATACTGAAAAGCAGGGCGAAACA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGTGAAGCA
* *
50363 ATAAAAGGTTAGCTTTCTGATGAGATACTGAGAAGTTGACCAAATTCGTCTTCCTGATGAGATAC
66 ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
* * *
50428 AGAAAAGCGAATTGAAACAAACGACGCATTCATCTTCCTGATGAGATACTAAGAAGAAGACCAAA
131 AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
50493 TCAAACCCAC
196 TCAAACCCAC
* *
50503 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAG-TAGGTCGAAGC
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGT-GAAGC
* * * *
50567 AATAAAAGGTCAGCTTACTGATGAGATATTGAGAAGTGGACCAAATTCGTCTTCCTGAAGAGATA
65 AATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
* * * *
50632 CAGAGAAGTGAATTGAAACAAATGACGCGGTCATCTTCTTGATGAGATACTGAGAAGAA-AGCCA
130 CAGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGA-CCA
50696 AATCAAACCCAC
194 AATCAAACCCAC
*
50708 GCTCGA-GT----AAATCTTCGAACCTCAGCTTCCTGATGAGACACTGAAAAGCAA-GTCGAAGC
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGT-GAAGC
* *
50767 AATAAAAGGTCAACTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCT
65 AATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCT
50823 A
Statistics
Matches: 1023, Mismatches: 112, Indels: 15
0.89 0.10 0.01
Matches are distributed among these distances:
200 99 0.10
201 1 0.00
204 7 0.01
205 914 0.89
206 2 0.00
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (205 bp):
GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGCAAGGTGAAGCA
ATAAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATAC
AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAA
TCAAACCCAC
Found at i:49913 original size:524 final size:519
Alignment explanation
Indices: 48959--49980 Score: 1625
Period size: 524 Copynumber: 2.0 Consensus size: 519
48949 TCAAACCCAC
* * *
48959 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGTAGGTCGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGACACTGAGAAGCAGGGCGAAGCA
* * * * *
49024 ATAAAAGGTCAGCTTACTGATGAGATATTGAGAAGTGGACCAAATTCGTCTTCCTGAAGAGATAC
66 ATAAAAGGTCAACTTACTGATGAGATACTAAGAAGTGGACCAAATTCGACTTCCGGAAGAGATAC
* * *
49089 AGAGAAGCGAATTGAAACAAATGACGCGGTCATCTTCTTGATGAGATACTGAGAAGAAAGCCAAA
131 AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAAGCCAAA
*
49154 TCAAACCCACGCTCGAGTAAATCTTCGAACCTCAACTTCCTGATGAGACACTGAAAAGCAAGTCG
196 TCAAACCCACGCTCGAGTAAATCTTCGAACCCCAACTTCCTGATGAGACACTGAAAAGCAAGTCG
* *
49219 AAGCAATAAAAGGTCAACTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTAATGA
261 AAGCAATAAAAGGTCAACTTCCTGATGAGATACTGAGAAGTAGAACAAATTCGTCTTCCTAATGA
*
49284 GATACAGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTAATGAGATACTGAGAAGAAGA
326 GATACAGAGAAGCGAATTGAAACAAACGACGCAATCATCTTCCTAATGAGATACTGAGAAGAAGA
*
49349 CCAAATCAAACCCAAGCTCGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAGACACTGAA
391 CCAAATCAAACCCAAGCTCGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAAACACTGAA
*
49414 AAGCAGGGCGAAGCAATAAAAAGTTAGCTTCCTGATGAGATACAGAGAAGTATACCAACTCAAG
456 AAGCAGGGCGAAACAATAAAAAGTTAGCTTCCTGATGAGATACAGAGAAGTATACCAACTCAAG
* *
49478 GCTCGATGTGAGCAAATCTTCGAATCTCAGCTTCCTGATAAGACACTGAGAAGCAGGGCGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGACACTGAGAAGCAGGGCGAAGCA
* * *
49543 ATAAAAGGTTAACTTCCTGATGAGATACTAAGAAGTGGACCAAATTCGACTTCCGGATGAGATAC
66 ATAAAAGGTCAACTTACTGATGAGATACTAAGAAGTGGACCAAATTCGACTTCCGGAAGAGATAC
*
49608 TGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAG-AAGACCAA
131 AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAAG-CCAA
* * * * *
49672 ATCAAACTCATGCTTGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAAAAGT
195 ATCAAACCCACGCTCGA-GT----AAATCTTCGAACCCCAACTTCCTGATGAGACACTGAAAAGC
* * *
49737 AAGGT-GAAGCAATGAAAGGTTAGCTTCCTGATGAGATACTGAGAAGTAGAACAAATTCGTCTTC
255 AA-GTCGAAGCAATAAAAGGTCAACTTCCTGATGAGATACTGAGAAGTAGAACAAATTCGTCTTC
* *
49801 CTGATGAGATACAGAGAAGCGAATTGAAACAAACGACGCAATCATCTTCCTGATGAGATACTGAG
319 CTAATGAGATACAGAGAAGCGAATTGAAACAAACGACGCAATCATCTTCCTAATGAGATACTGAG
* * * *
49866 AAGAAGACCAAATCAAACCCACGCTCGATGTGAGTAAATCTTCGAACCCCAGCTTCTTGATGAAA
384 AAGAAGACCAAATCAAACCCAAGCTCGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAAA
*
49931 CACTGAAAAGCAGGGCGAAACAATAAAAGGTTAGCTTCCTGATGAGATAC
449 CACTGAAAAGCAGGGCGAAACAATAAAAAGTTAGCTTCCTGATGAGATAC
49981 TGATAAGTTG
Statistics
Matches: 458, Mismatches: 38, Indels: 9
0.91 0.08 0.02
Matches are distributed among these distances:
518 3 0.01
519 187 0.41
520 2 0.00
524 264 0.58
525 2 0.00
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (519 bp):
GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATAAGACACTGAGAAGCAGGGCGAAGCA
ATAAAAGGTCAACTTACTGATGAGATACTAAGAAGTGGACCAAATTCGACTTCCGGAAGAGATAC
AGAGAAGCGAATTGAAACAAACGACGCAGTCATCTTCCTGATGAGATACTGAGAAGAAAGCCAAA
TCAAACCCACGCTCGAGTAAATCTTCGAACCCCAACTTCCTGATGAGACACTGAAAAGCAAGTCG
AAGCAATAAAAGGTCAACTTCCTGATGAGATACTGAGAAGTAGAACAAATTCGTCTTCCTAATGA
GATACAGAGAAGCGAATTGAAACAAACGACGCAATCATCTTCCTAATGAGATACTGAGAAGAAGA
CCAAATCAAACCCAAGCTCGATGTGAGCAAATCCTCGAACCCCAGCTTCCTGATGAAACACTGAA
AAGCAGGGCGAAACAATAAAAAGTTAGCTTCCTGATGAGATACAGAGAAGTATACCAACTCAAG
Done.