Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011444.1 Kokia drynarioides strain JFW-HI SEQ_126428, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3753
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36


Found at i:1342 original size:20 final size:22

Alignment explanation


    Indices: 1317--1358  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1307 TTGTTCTTCC

                                  
       1317 TTCTTT-TGT-TTCTTTTTTTT
          1 TTCTTTCTGTATTCTTTTTTTT

                    *             
       1337 TTCTTTCTTTATTCTTTTTTTT
          1 TTCTTTCTGTATTCTTTTTTTT

       1359 CTTATATATA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  20    6  0.32
  21    2  0.11
  22   11  0.58

ACGTcount: A:0.02, C:0.12, G:0.02, T:0.83


Consensus pattern (22 bp):   
TTCTTTCTGTATTCTTTTTTTT

Found at i:1363 original size:15 final size:15

Alignment explanation


    Indices: 1317--1363  Score: 51
    Period size: 15  Copynumber: 3.1  Consensus size: 15

       1307 TTGTTCTTCC

                   *       
       1317 TTCTTTTGTTTCTT-
          1 TTCTTTTTTTTCTTA

              *              
       1331 TTTTTTTTCTTTCTTTA
          1 TTCTTTTT-TTTC-TTA

                           
       1348 TTCTTTTTTTTCTTA
          1 TTCTTTTTTTTCTTA

             
       1363 T
          1 T

       1364 ATATATATAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 5
        0.77            0.09        0.14

Matches are distributed among these distances:
  14    6  0.22
  15    8  0.30
  16    6  0.22
  17    7  0.26

ACGTcount: A:0.04, C:0.13, G:0.02, T:0.81


Consensus pattern (15 bp):   
TTCTTTTTTTTCTTA
Done.