Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011446.1 Kokia drynarioides strain JFW-HI SEQ_126430, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1108
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.34

Warning! 32 characters in sequence are not A, C, G, or T


Found at i:155 original size:20 final size:20

Alignment explanation


    Indices: 119--173  Score: 55
    Period size: 20  Copynumber: 2.9  Consensus size: 20

        109 TTAATATATT

                     *          
        119 TTAAAATTTTTATATTTTCA
          1 TTAAAATTTATATATTTTCA

                                 
        139 TTAAAATTTA-ATAATTTT--
          1 TTAAAATTTATAT-ATTTTCA

                              
        157 TCTAAAATTTAT-TATTT
          1 T-TAAAATTTATATATTT

        174 ATAATTTTTA


Statistics
Matches: 31,  Mismatches: 1, Indels: 8
        0.77            0.03        0.20

Matches are distributed among these distances:
  18    5  0.16
  19   12  0.39
  20   14  0.45

ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58


Consensus pattern (20 bp):   
TTAAAATTTATATATTTTCA

Found at i:220 original size:10 final size:10

Alignment explanation


    Indices: 205--229  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

        195 AGTTTTTTTT

                      
        205 TTTTTGAAAA
          1 TTTTTGAAAA

                      
        215 TTTTTGAAAA
          1 TTTTTGAAAA

                 
        225 TTTTT
          1 TTTTT

        230 TATACTCTTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60


Consensus pattern (10 bp):   
TTTTTGAAAA
Done.