Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011448.1 Kokia drynarioides strain JFW-HI SEQ_126432, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2344
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.39

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2078 original size:19 final size:19

Alignment explanation


    Indices: 2054--2102  Score: 55
    Period size: 19  Copynumber: 2.5  Consensus size: 19

       2044 ATGAGGATAT

                        *       
       2054 TTTATTTTTAATTCATTT-A
          1 TTTATTTTT-ATACATTTGA

                                
       2073 TTTATTTTGTATACATTTGA
          1 TTTATTTT-TATACATTTGA

                      
       2093 TTTGATTTTT
          1 TTT-ATTTTT

       2103 TTATTATTTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  19   15  0.58
  20    6  0.23
  21    5  0.19

ACGTcount: A:0.22, C:0.04, G:0.06, T:0.67


Consensus pattern (19 bp):   
TTTATTTTTATACATTTGA
Done.