Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011449.1 Kokia drynarioides strain JFW-HI SEQ_126433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2302
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38


Found at i:214 original size:10 final size:10

Alignment explanation


    Indices: 211--254  Score: 52
    Period size: 10  Copynumber: 4.3  Consensus size: 10

        201 AAAAAAATTC

                       
        211 AAAATTCAAAA
          1 AAAATTC-AAA

                  *   
        222 AAAATTTAAA
          1 AAAATTCAAA

                   ** 
        232 AAAATTCGTA
          1 AAAATTCAAA

                      
        242 AAAATTCAAA
          1 AAAATTCAAA

               
        252 AAA
          1 AAA

        255 TAAATAAATT


Statistics
Matches: 27,  Mismatches: 6, Indels: 1
        0.79            0.18        0.03

Matches are distributed among these distances:
  10   21  0.78
  11    6  0.22

ACGTcount: A:0.68, C:0.07, G:0.02, T:0.23


Consensus pattern (10 bp):   
AAAATTCAAA

Found at i:215 original size:28 final size:28

Alignment explanation


    Indices: 197--254  Score: 80
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        187 TTATAAAAGT

                                        
        197 ATTAAAAAAAATTCAAAATTCAAAAAAA
          1 ATTAAAAAAAATTCAAAATTCAAAAAAA

               *                          
        225 ATTTAAAAAAATTCGTAAAAATTCAAAAAA
          1 ATTAAAAAAAATTC---AAAATTCAAAAAA

        255 TAAATAAATT


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  28   13  0.50
  31   13  0.50

ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24


Consensus pattern (28 bp):   
ATTAAAAAAAATTCAAAATTCAAAAAAA
Done.