Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001145.1 Kokia drynarioides strain JFW-HI SEQ_112449, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36


Found at i:1027 original size:15 final size:15

Alignment explanation


    Indices: 1007--1038  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        997 TTTTGCATTC

                      *    
       1007 TTTTTTTTGTGTTTT
          1 TTTTTTTTGTATTTT

                           
       1022 TTTTTTTTGTATTTT
          1 TTTTTTTTGTATTTT

              
       1037 TT
          1 TT

       1039 ATAAACTAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.03, C:0.00, G:0.09, T:0.88


Consensus pattern (15 bp):   
TTTTTTTTGTATTTT
Done.