Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011455.1 Kokia drynarioides strain JFW-HI SEQ_126439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3005
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34


Found at i:1604 original size:24 final size:24

Alignment explanation


    Indices: 1577--1661  Score: 143
    Period size: 24  Copynumber: 3.5  Consensus size: 24

       1567 AAGTGTTAGA

                           *   *    
       1577 AGTTTAATTGAAACAAATAGACAG
          1 AGTTTAATTGAAACATATAAACAG

                                    
       1601 AGTTTAATTGAAACATATAAACAG
          1 AGTTTAATTGAAACATATAAACAG

                                    
       1625 AGTTTAATTGAAACATATAAACAG
          1 AGTTTAATTGAAACATATAAACAG

                   *     
       1649 AGTTTAACTGAAA
          1 AGTTTAATTGAAA

       1662 GATTATTTCC


Statistics
Matches: 58,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  24   58  1.00

ACGTcount: A:0.49, C:0.08, G:0.14, T:0.28


Consensus pattern (24 bp):   
AGTTTAATTGAAACATATAAACAG
Done.