genome.fa.s11463.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011463.1 Kokia drynarioides strain JFW-HI SEQ_126447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338791

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580--613	14	2.4	14	85	0	50	11	5	5	76	1.14
7329--7610	51	5.5	51	86	5	374	30	14	24	30	1.95
9204--9266	29	2.2	28	78	15	67	39	3	23	33	1.71
10011--10057	19	2.8	16	87	12	60	4	6	6	82	0.92
11351--11408	23	2.5	23	82	0	71	34	24	17	24	1.96
17038--17071	9	3.8	9	96	0	59	38	11	17	32	1.86
24893--24923	6	5.2	6	100	0	62	19	16	32	32	1.94
24913--24971	30	2.0	30	93	0	100	16	16	30	35	1.92
27196--27496	99	3.0	99	84	1	372	26	22	18	32	1.97
27945--28520	72	8.0	72	93	2	928	18	21	26	33	1.97
42338--42513	88	2.0	88	94	0	307	28	15	21	34	1.94
43459--43494	6	6.0	6	100	0	72	16	16	33	33	1.92
43484--43656	30	5.4	30	85	12	220	17	17	32	31	1.94
43478--43764	36	8.3	36	83	13	349	17	17	32	32	1.93
43484--43782	66	4.5	61	76	20	287	17	17	32	33	1.93
43658--43782	30	4.0	30	84	11	160	17	16	31	34	1.93
45950--46132	99	1.8	99	81	4	226	24	19	21	34	1.96
49320--49352	6	5.5	6	92	0	57	66	0	0	33	0.92
50099--50143	21	2.2	20	88	4	63	28	0	2	68	1.01
51683--51718	16	2.2	17	90	5	56	44	0	8	47	1.33
52754--53532	335	2.3	336	82	3	935	37	16	14	31	1.89
55594--55632	17	2.2	19	86	9	55	43	0	2	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56045--56124	31	2.7	29	82	5	88	37	3	10	48	1.55
56066--56133	30	2.3	30	82	2	84	35	5	8	50	1.58
56657--56731	29	2.5	30	78	10	82	56	6	0	37	1.26
68397--68441	11	4.0	11	88	5	72	37	0	2	60	1.09
68398--68447	6	8.7	6	78	8	59	40	0	2	58	1.10
68398--68447	23	2.2	23	96	0	91	40	0	2	58	1.10
68397--68457	17	3.5	17	82	6	70	37	1	1	59	1.17
69463--69859	198	2.0	197	97	1	742	27	21	30	20	1.98
70387--70528	29	4.8	29	70	20	89	39	21	2	35	1.68
70394--70647	59	4.3	56	81	7	224	36	24	3	35	1.72
70419--70645	29	7.8	29	71	16	141	35	25	3	36	1.73
70396--70647	30	8.6	29	70	17	146	36	24	3	35	1.72
70463--70679	117	1.8	118	80	10	266	32	25	4	37	1.75
70718--70779	28	2.2	28	85	0	79	35	27	6	30	1.82
71673--71729	16	3.1	19	77	20	59	50	0	0	49	1.00
71684--71773	28	3.1	28	80	10	110	53	0	1	45	1.07
77623--77651	3	9.7	3	100	0	58	31	0	0	68	0.89
96592--96639	21	2.3	21	85	0	60	31	29	25	14	1.95
99531--99595	31	2.1	31	82	0	76	32	13	12	41	1.82
102212--102276	31	2.1	30	88	2	94	33	9	12	44	1.74
102689--102742	2	27.0	2	92	7	92	48	1	0	50	1.11
104783--104857	38	2.0	38	100	0	150	42	12	21	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121710--121741	15	2.0	17	88	11	50	75	6	0	18	1.01
124201--124270	29	2.3	29	85	4	86	27	12	12	47	1.78
126390--126414	2	12.5	2	100	0	50	52	0	0	48	1.00
133281--133361	40	2.0	40	100	0	162	30	17	12	39	1.86
141412--141444	17	2.0	17	88	5	50	45	24	15	15	1.84
148890--148920	14	2.2	14	94	0	53	3	9	0	87	0.66
153118--153146	7	4.1	7	100	0	58	68	17	0	13	1.20
153480--153519	16	2.4	16	87	4	53	55	2	0	42	1.13
167615--167674	11	5.2	11	76	9	57	43	11	1	43	1.51
176691--176734	15	2.9	15	75	3	52	65	0	0	34	0.93
182954--182983	5	6.0	5	100	0	60	20	40	20	20	1.92
184470--184503	15	2.3	15	100	0	68	47	20	11	20	1.81
194436--194531	48	2.0	48	100	0	192	31	20	14	33	1.93
212528--212617	45	2.0	45	93	0	153	30	16	20	33	1.94
222621--222768	72	2.0	74	90	2	237	36	10	16	36	1.83
233585--233622	18	2.1	18	85	9	51	36	2	0	60	1.11
240104--240137	18	1.9	18	88	5	52	70	0	8	20	1.13
240404--240440	18	2.1	18	89	0	56	48	0	27	24	1.51
242822--242869	22	2.2	21	81	3	60	37	12	0	50	1.41
244479--244542	28	2.3	28	83	0	83	39	23	10	26	1.88
246016--246048	16	2.1	16	94	0	57	54	3	18	24	1.57
246463--246498	18	2.1	16	90	10	54	52	0	16	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247039--247329	52	5.6	52	92	0	465	26	14	23	35	1.93
247299--247452	62	2.5	62	90	2	247	31	14	22	32	1.93
250877--251023	52	2.8	52	88	1	222	29	16	22	31	1.96
251645--251711	21	3.0	21	69	24	57	25	7	28	38	1.83
251670--251724	21	2.4	23	82	8	60	21	12	27	38	1.90
252086--252145	17	3.6	17	72	18	54	40	1	10	48	1.47
252081--252157	33	2.3	34	84	6	104	44	1	7	46	1.40
253876--253952	40	1.9	40	100	0	154	16	22	10	50	1.75
254141--254326	57	3.2	57	78	7	182	33	26	2	36	1.71
254139--254387	29	8.7	29	72	13	151	34	28	3	33	1.74
254223--254442	57	3.8	57	77	8	187	35	27	4	32	1.77
256386--256415	8	3.8	8	100	0	60	46	0	0	53	1.00
256879--256910	14	2.1	16	88	11	50	12	6	6	75	1.19
264663--264728	15	4.5	15	72	10	57	68	3	1	27	1.13
264675--264732	17	3.7	17	69	21	54	70	3	1	24	1.12
264975--265007	14	2.4	14	94	0	57	27	6	6	60	1.44
269666--269724	25	2.3	25	82	8	66	64	0	0	35	0.94
272573--272658	45	2.0	44	80	15	99	34	3	13	47	1.60
274996--275027	12	2.7	12	100	0	64	71	6	15	6	1.26
278359--278473	40	2.9	41	90	3	189	37	19	24	19	1.94
278511--278760	41	6.1	41	83	4	290	32	15	29	23	1.95
285520--285716	99	2.0	99	92	0	331	26	15	16	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293888--293966	31	2.6	30	82	6	79	45	11	7	35	1.69
295631--295669	16	2.3	18	82	13	55	74	7	2	15	1.15
301702--301730	10	2.9	10	100	0	58	37	20	20	20	1.94
310464--310499	5	7.0	5	93	6	63	19	0	0	80	0.71
314330--314382	26	2.0	26	100	0	106	35	15	7	41	1.75
316302--316549	136	1.8	135	80	0	298	39	20	12	27	1.89
325321--325372	21	2.4	21	81	15	61	61	0	1	36	1.07
325315--325372	21	2.6	22	74	20	57	62	0	1	36	1.06
326999--327023	6	4.2	6	100	0	50	48	36	16	0	1.46
337725--337824	48	2.1	49	92	1	166	51	1	3	45	1.23

Tables:   1

The End!