Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011475.1 Kokia drynarioides strain JFW-HI SEQ_126459, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15758
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30


Found at i:6611 original size:6 final size:6

Alignment explanation


    Indices: 6602--6628  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       6592 ATAGTAACAA

                                           
       6602 ATTCCC ATTCCC ATTCCC ATTCCC ATT
          1 ATTCCC ATTCCC ATTCCC ATTCCC ATT

       6629 AGTCTTTACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.19, C:0.44, G:0.00, T:0.37


Consensus pattern (6 bp):   
ATTCCC

Found at i:13256 original size:29 final size:29

Alignment explanation


    Indices: 13222--13283  Score: 79
    Period size: 30  Copynumber: 2.1  Consensus size: 29

      13212 AGTTTGGTGG

                    *  *   *              
      13222 TAAAAATGTAATTTTTAAAGAGTTTAGGGT
          1 TAAAAATGGAAGTTTGAAA-AGTTTAGGGT

                            *            
      13252 TAAAAATGGAAGTTTGGAAAGTTTAGGGT
          1 TAAAAATGGAAGTTTGAAAAGTTTAGGGT

               
      13281 TAA
          1 TAA

      13284 TTGCTACTCA


Statistics
Matches: 28,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  29   13  0.46
  30   15  0.54

ACGTcount: A:0.40, C:0.00, G:0.24, T:0.35


Consensus pattern (29 bp):   
TAAAAATGGAAGTTTGAAAAGTTTAGGGT
Done.