Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011479.1 Kokia drynarioides strain JFW-HI SEQ_126463, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80075
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 81 characters in sequence are not A, C, G, or T
Found at i:1584 original size:35 final size:35
Alignment explanation
Indices: 1540--1615 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
1530 TTACAAGAAT
* * *
1540 ATGAAAGGTTGAGGAAGCTGGAAGGTTAAAGGTCA
1 ATGAAAGGTTAAGGAAGATGGAAGGTTAAAAGTCA
*
1575 ATGAGAGGTTAAGGAAGATGGAAGGTTAAAAGTCA
1 ATGAAAGGTTAAGGAAGATGGAAGGTTAAAAGTCA
1610 A-GAAAG
1 ATGAAAG
1616 ATGAAAGGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 4 0.11
35 32 0.89
ACGTcount: A:0.42, C:0.04, G:0.36, T:0.18
Consensus pattern (35 bp):
ATGAAAGGTTAAGGAAGATGGAAGGTTAAAAGTCA
Found at i:1600 original size:17 final size:17
Alignment explanation
Indices: 1544--1603 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
1534 AAGAATATGA
* *
1544 AAGGTTGAGGAAGCTGG
1 AAGGTTAAGGAAGATGG
*
1561 AAGGTTAAAGGTCA-AT-G
1 AAGGTT-AAGG-AAGATGG
1578 AGAGGTTAAGGAAGATGG
1 A-AGGTTAAGGAAGATGG
1596 AAGGTTAA
1 AAGGTTAA
1604 AAGTCAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
16 1 0.03
17 21 0.62
18 11 0.32
19 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.38, T:0.20
Consensus pattern (17 bp):
AAGGTTAAGGAAGATGG
Found at i:1956 original size:20 final size:21
Alignment explanation
Indices: 1920--1965 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
1910 AAAATTTTAT
1920 TATTTTAAAAATATAATATAA
1 TATTTTAAAAATATAATATAA
* *
1941 TATTTT-AAATTATAATATAT
1 TATTTTAAAAATATAATATAA
1961 TATTT
1 TATTT
1966 GAATCATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TATTTTAAAAATATAATATAA
Found at i:2150 original size:15 final size:16
Alignment explanation
Indices: 2127--2161 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
2117 ATATTTGAAA
*
2127 ATTTTAAATA-ATATT
1 ATTTCAAATATATATT
2142 ATTTCAAATATATATT
1 ATTTCAAATATATATT
2158 ATTT
1 ATTT
2162 ATAAATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTCAAATATATATT
Found at i:10773 original size:13 final size:13
Alignment explanation
Indices: 10755--10780 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10745 ATTTGAATTT
10755 AAAAGAAAAGAAA
1 AAAAGAAAAGAAA
10768 AAAAGAAAAGAAA
1 AAAAGAAAAGAAA
10781 TAAGCCTCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAGAAA
Found at i:16009 original size:20 final size:20
Alignment explanation
Indices: 15984--16030 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
15974 ATATACAAAG
15984 GTGCATGCCGGCATGGTCTA
1 GTGCATGCCGGCATGGTCTA
16004 GTGCATGCCGGCATGGTCTA
1 GTGCATGCCGGCATGGTCTA
16024 GTGCATG
1 GTGCATG
16031 GCCAACGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.15, C:0.23, G:0.36, T:0.26
Consensus pattern (20 bp):
GTGCATGCCGGCATGGTCTA
Found at i:18756 original size:18 final size:19
Alignment explanation
Indices: 18733--18770 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
18723 TTGCTATTTT
18733 TATA-TTACAAAATATCTA
1 TATATTTACAAAATATCTA
18751 TATATTTTACAAAATATCTA
1 TATA-TTTACAAAATATCTA
18771 CTCTCTCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
20 14 0.78
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (19 bp):
TATATTTACAAAATATCTA
Found at i:26307 original size:52 final size:52
Alignment explanation
Indices: 26241--26580 Score: 421
Period size: 52 Copynumber: 6.6 Consensus size: 52
26231 AATGTAAAAG
* * * * *
26241 GGTCCAATAACTATGTGTCATCGTGAGTATTTGAATACTTTACGGATTATAA
1 GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGA
* ** *
26293 GGTCCGATGACTATGTGTCATCATGAGTAGCTGAATCCTTTACGGGTTATGA
1 GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGA
* * *
26345 AGTCCGATGACTATGTGTCATCGTGAATATCTGAATCCTTTACGGATTATGA
1 GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGA
* * *
26397 GGTCTGATGACTATGTGTCATCATGAGTATATGAATCCTTTACGGATTGTGA
1 GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGA
* * * * * * *
26449 GGTCTGATGATTACG-GCCATCGTGAGTATATGAATTCTTTATGGATTGTGA
1 GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGA
* * ** *
26500 GGTCTGATGACTACGTGTCATCGTGAGTATGCGAATCCTTTACGGATTGTGA
1 GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGA
*
26552 GGTCCGATTACTATGTGTCATCGTGAGTA
1 GGTCCGATGACTATGTGTCATCGTGAGTA
26581 CTAAAAGGAA
Statistics
Matches: 253, Mismatches: 34, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
51 46 0.18
52 207 0.82
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (52 bp):
GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGA
Found at i:26449 original size:26 final size:25
Alignment explanation
Indices: 26420--26500 Score: 58
Period size: 26 Copynumber: 3.2 Consensus size: 25
26410 TGTGTCATCA
26420 TGAGTATATGAATCCTTTACGGATTG
1 TGAGTATATGAAT-CTTTACGGATTG
* * ** *
26446 TGAG-GTCTG-ATGATTACGGCCATCG
1 TGAGTATATGAATCTTTACGG--ATTG
*
26471 TGAGTATATGAATTCTTTATGGATTG
1 TGAGTATATGAA-TCTTTACGGATTG
26497 TGAG
1 TGAG
26501 GTCTGATGAC
Statistics
Matches: 39, Mismatches: 11, Indels: 10
0.65 0.18 0.17
Matches are distributed among these distances:
23 6 0.15
24 2 0.05
25 10 0.26
26 14 0.36
27 1 0.03
28 6 0.15
ACGTcount: A:0.25, C:0.11, G:0.27, T:0.37
Consensus pattern (25 bp):
TGAGTATATGAATCTTTACGGATTG
Found at i:37124 original size:23 final size:24
Alignment explanation
Indices: 37074--37124 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
37064 CTTGCCTTCT
**
37074 TTATGTATATTTAAATTTAAATGT
1 TTATGTATATTTAAATTTAAATAA
37098 TTAT-TATATTT-AATTTAATATAA
1 TTATGTATATTTAAATTTAA-ATAA
37121 TTAT
1 TTAT
37125 AAATTCAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.29
23 13 0.54
24 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (24 bp):
TTATGTATATTTAAATTTAAATAA
Found at i:39291 original size:41 final size:41
Alignment explanation
Indices: 39233--39341 Score: 182
Period size: 41 Copynumber: 2.7 Consensus size: 41
39223 CATGCAAAAC
* *
39233 TGTTAGAATTGGTTGACTAGAATTCTTGTTAAAGTGGAGAT
1 TGTTAGAATTGGATGACTAGAATTCTTGTTAAAGTAGAGAT
*
39274 TGTTAGAATTGGGTGACTAGAATTCTTGTTAAAGTAGAGAT
1 TGTTAGAATTGGATGACTAGAATTCTTGTTAAAGTAGAGAT
*
39315 TGCTAGAATTGGATGACTAGAATTCTT
1 TGTTAGAATTGGATGACTAGAATTCTT
39342 AAAATAAAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 64 1.00
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (41 bp):
TGTTAGAATTGGATGACTAGAATTCTTGTTAAAGTAGAGAT
Found at i:41258 original size:24 final size:24
Alignment explanation
Indices: 41181--41261 Score: 117
Period size: 24 Copynumber: 3.4 Consensus size: 24
41171 AATCTTTCCA
*
41181 TTAAACTCTGTTTAATTGTTTCAG
1 TTAAACTCTGTTTATTTGTTTCAG
*
41205 TTAAACTCTGTTTATTTGTTTCAA
1 TTAAACTCTGTTTATTTGTTTCAG
* *
41229 TTAAACTCTATTTATTTGTTTGAG
1 TTAAACTCTGTTTATTTGTTTCAG
*
41253 TCAAACTCT
1 TTAAACTCT
41262 TATTAGTCTA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.26, C:0.14, G:0.10, T:0.51
Consensus pattern (24 bp):
TTAAACTCTGTTTATTTGTTTCAG
Found at i:44347 original size:13 final size:13
Alignment explanation
Indices: 44329--44355 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
44319 GTAATAAGAG
44329 TTTGACTCAAACA
1 TTTGACTCAAACA
44342 TTTGACTCAAACA
1 TTTGACTCAAACA
44355 T
1 T
44356 ATAAACAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (13 bp):
TTTGACTCAAACA
Found at i:51361 original size:24 final size:24
Alignment explanation
Indices: 51334--51380 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
51324 TATTTAGTCC
51334 TTAAC-ATTTACATATTTTATTAAT
1 TTAACTATTTACATATTTT-TTAAT
* *
51358 TTAACTTTTTATATATTTTTTAA
1 TTAACTATTTACATATTTTTTAA
51381 CTAAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (24 bp):
TTAACTATTTACATATTTTTTAAT
Found at i:51550 original size:10 final size:10
Alignment explanation
Indices: 51537--51567 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
51527 TTTTAATGAA
51537 TTTTAATTTT
1 TTTTAATTTT
*
51547 TTTTAATATT
1 TTTTAATTTT
51557 TTTTAATTTT
1 TTTTAATTTT
51567 T
1 T
51568 AAATTATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTAATTTT
Found at i:51550 original size:20 final size:20
Alignment explanation
Indices: 51527--51567 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
51517 TTTTTTTTAA
51527 TTTTAATGA-ATTTTAATTTT
1 TTTTAAT-ATATTTTAATTTT
*
51547 TTTTAATATTTTTTAATTTT
1 TTTTAATATATTTTAATTTT
51567 T
1 T
51568 AAATTATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTAATATATTTTAATTTT
Found at i:52193 original size:20 final size:18
Alignment explanation
Indices: 52153--52204 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
52143 TTGTGAATGT
*
52153 AAAAAATATAAAAAATTA
1 AAAAAATATAAAAAATCA
*
52171 AAAAAATATATATAAATCCA
1 AAAAAATATA-AAAAAT-CA
*
52191 AAAAAGTA-AAAAAA
1 AAAAAATATAAAAAA
52205 AATTACTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 14 0.50
19 6 0.21
20 8 0.29
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (18 bp):
AAAAAATATAAAAAATCA
Found at i:53010 original size:17 final size:17
Alignment explanation
Indices: 52975--53012 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
52965 GAACTTCAAT
*
52975 AAATAAATAAATATTTA
1 AAATAAATAAATATATA
52992 AAATACAATAAATA-ATA
1 AAATA-AATAAATATATA
53009 AAAT
1 AAAT
53013 GATGTAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAATAAATAAATATATA
Found at i:53398 original size:14 final size:14
Alignment explanation
Indices: 53362--53392 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
53352 TTTAAATATA
53362 TTAAATTTATCTAT
1 TTAAATTTATCTAT
*
53376 TTAAATTTATGTAT
1 TTAAATTTATCTAT
53390 TTA
1 TTA
53393 TTTTTAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (14 bp):
TTAAATTTATCTAT
Found at i:54186 original size:29 final size:30
Alignment explanation
Indices: 54144--54202 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
54134 AAGTTGGATC
* *
54144 AAATCAAAATTTCATATATAAAATTGCACA
1 AAATCAAAAGTTCATATATAAAATTACACA
*
54174 AAATC-AAAGTTCATATATACAATTACACA
1 AAATCAAAAGTTCATATATAAAATTACACA
54203 TTAAACTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.29
Consensus pattern (30 bp):
AAATCAAAAGTTCATATATAAAATTACACA
Found at i:64966 original size:19 final size:19
Alignment explanation
Indices: 64927--64968 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
64917 AATACTTTTT
* **
64927 AAAAGTACTTTTAAGTCAA
1 AAAAGAACTTTTAAGAAAA
64946 AAAAGAACTTTTAAGAAAA
1 AAAAGAACTTTTAAGAAAA
64965 AAAA
1 AAAA
64969 ATTAAAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.60, C:0.07, G:0.10, T:0.24
Consensus pattern (19 bp):
AAAAGAACTTTTAAGAAAA
Found at i:70438 original size:67 final size:66
Alignment explanation
Indices: 70318--70473 Score: 190
Period size: 67 Copynumber: 2.3 Consensus size: 66
70308 TTGAATAATC
* ** **
70318 TGGAGGTTGCAAGCTTAACTCAACTAACCTTAATCATCAGTTGAGAACGTAGGTTC-GTGAGCTA
1 TGGA-GTTGCGAGCTTAACTCAACTAACCTTAATCATCAACTGAGAACGTAGG-TCAACGAGCTA
70382 TTT
64 TTT
* *
70385 TGGAGTTGCGAGCTTAACTCGACTAACCTTTAATCATCAACTGA-AGACGTAGGTCAACGAGCTG
1 TGGAGTTGCGAGCTTAACTCAACTAACC-TTAATCATCAACTGAGA-ACGTAGGTCAACGAGCTA
70449 TTT
64 TTT
*
70452 CGGAGTTGCGAGCTTAACTCAA
1 TGGAGTTGCGAGCTTAACTCAA
70474 TTATCTTGAA
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
66 25 0.32
67 52 0.68
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (66 bp):
TGGAGTTGCGAGCTTAACTCAACTAACCTTAATCATCAACTGAGAACGTAGGTCAACGAGCTATT
T
Found at i:70573 original size:172 final size:171
Alignment explanation
Indices: 70377--70698 Score: 434
Period size: 172 Copynumber: 1.9 Consensus size: 171
70367 TAGGTTCGTG
* *
70377 AGCTATTTTGGAGTTGCGAGCTTAACTCGA-CTAACCTTTAATCATCAA-C-TGAAGACGTAGGT
1 AGCTATTTTGAAGTTGCGAGCTTAACTC-ATCTAACCTTTAATCAT-AAGCGTGAAGA--TAAGT
* * * * * * * *
70439 CAACGAGCTGTTTCGGAGTTGCGAGCTTAACTCAATTATCTTGAATAATTTAGAGGCTACGAGCT
62 CAACGAGCTGTTTCGAAGTTACGAACTTAACTCAATTAACTCGAATAATTTAGAAGCTACAAACT
70504 TAACTCAGTTAACCTTTAATCATCAACTGGGAGCATTGTTCCACT
127 TAACTCAGTTAACCTTTAATCATCAACTGGGAGCATTGTTCCACT
* * *
70549 AGCTATTTTGAAGTTGTGAGCTTAACTCATCTAACCTTTAATCATAAGCTGTGAATATAAGTCCA
1 AGCTATTTTGAAGTTGCGAGCTTAACTCATCTAACCTTTAATCATAAGC-GTGAAGATAAGTCAA
* * *
70614 CGAGCTGTTTCGAAGTTACGAACTTAATTCAATTAACTCGAATAATTTGGAAGTTACAAACTTAA
65 CGAGCTGTTTCGAAGTTACGAACTTAACTCAATTAACTCGAATAATTTAGAAGCTACAAACTTAA
70679 CTCAGTTAACCTTTAATCAT
130 CTCAGTTAACCTTTAATCAT
70699 TAGTTGAGAA
Statistics
Matches: 130, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
171 3 0.02
172 122 0.94
174 5 0.04
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (171 bp):
AGCTATTTTGAAGTTGCGAGCTTAACTCATCTAACCTTTAATCATAAGCGTGAAGATAAGTCAAC
GAGCTGTTTCGAAGTTACGAACTTAACTCAATTAACTCGAATAATTTAGAAGCTACAAACTTAAC
TCAGTTAACCTTTAATCATCAACTGGGAGCATTGTTCCACT
Found at i:70614 original size:67 final size:67
Alignment explanation
Indices: 70499--70630 Score: 153
Period size: 67 Copynumber: 2.0 Consensus size: 67
70489 TAGAGGCTAC
* * * *
70499 GAGCTTAACTCAGTTAACCTTTAATCATCAACTGGGAGCATTGTTCCACTAGCTATTTTGAAGTT
1 GAGCTTAACTCAGTTAACCTTTAATCATCAACTGGGAACATAGTTCCACGAGCTATTTCGAAGTT
70564 GT
66 GT
* * *
70566 GAGCTTAACTCA-TCTAACCTTTAATCAT-AAGCTGTGAATATAAG-TCCACGAGCTGTTTCGAA
1 GAGCTTAACTCAGT-TAACCTTTAATCATCAA-CTGGGAACAT-AGTTCCACGAGCTATTTCGAA
70628 GTT
63 GTT
70631 ACGAACTTAA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
66 3 0.05
67 51 0.93
68 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (67 bp):
GAGCTTAACTCAGTTAACCTTTAATCATCAACTGGGAACATAGTTCCACGAGCTATTTCGAAGTT
GT
Found at i:78563 original size:21 final size:21
Alignment explanation
Indices: 78512--78563 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
78502 AGATTTGTAT
* *
78512 CGATACAAGCGACAGTTCTAC
1 CGATACAAGTGACACTTCTAC
* *
78533 TGATACAAGTGACTCTTCTAC
1 CGATACAAGTGACACTTCTAC
78554 CGATACAAGT
1 CGATACAAGT
78564 CTTACCTCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (21 bp):
CGATACAAGTGACACTTCTAC
Done.