Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001148.1 Kokia drynarioides strain JFW-HI SEQ_112454, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 948

Length: 1581
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38


Found at i:1213 original size:17 final size:17

Alignment explanation


    Indices: 1178--1226  Score: 64
    Period size: 17  Copynumber: 2.9  Consensus size: 17

       1168 TAATTAGTTA

                              
       1178 AATTTTAAA-TTCAAATT
          1 AATTTTAAACTT-AAATT

                          *  
       1195 AATTTTAAACTTAATTT
          1 AATTTTAAACTTAAATT

              *            
       1212 AAATTTAAACTTAAA
          1 AATTTTAAACTTAAA

       1227 AGAAAAGTTT


Statistics
Matches: 28,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  17   26  0.93
  18    2  0.07

ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45


Consensus pattern (17 bp):   
AATTTTAAACTTAAATT
Done.