Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011480.1 Kokia drynarioides strain JFW-HI SEQ_126464, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 138786
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:4388 original size:17 final size:17
Alignment explanation
Indices: 4368--4427 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
4358 TCCTTGGCTT
4368 TTAACCTTCCATCTTCC
1 TTAACCTTCCATCTTCC
*
4385 TTAACC-TCC-CCTTGACC
1 TTAACCTTCCATCTT--CC
*
4402 TTTAACCTTGCATCTTCC
1 -TTAACCTTCCATCTTCC
*
4420 TCAACCTT
1 TTAACCTT
4428 TCATATTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
15 3 0.09
16 3 0.09
17 15 0.44
18 8 0.24
19 2 0.06
20 3 0.09
ACGTcount: A:0.18, C:0.40, G:0.03, T:0.38
Consensus pattern (17 bp):
TTAACCTTCCATCTTCC
Found at i:5308 original size:12 final size:12
Alignment explanation
Indices: 5290--5322 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
5280 TTTTCGTAGG
5290 GTTTATTTACTAA
1 GTTTATTTAC-AA
5303 -TTTATTTACAA
1 GTTTATTTACAA
5314 GTTTATTTA
1 GTTTATTTA
5323 GGTTTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 17 0.89
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (12 bp):
GTTTATTTACAA
Found at i:7358 original size:43 final size:44
Alignment explanation
Indices: 7296--7388 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 44
7286 TGTCAAGGTG
* ** *
7296 TATGTATGTATACTATTTTGAGGTACACGGGCATGTGT-CAGGC
1 TATGTGTGTATACTATTTTGAGACACACAGGCATGTGTCCAGGC
* * *
7339 TATGTGTGTATATTGTTTTGAGACACACAGGCGTGTGTCCAGGC
1 TATGTGTGTATACTATTTTGAGACACACAGGCATGTGTCCAGGC
*
7383 TGTGTG
1 TATGTG
7389 AAGCCACACA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
43 31 0.76
44 10 0.24
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.35
Consensus pattern (44 bp):
TATGTGTGTATACTATTTTGAGACACACAGGCATGTGTCCAGGC
Found at i:12687 original size:24 final size:24
Alignment explanation
Indices: 12660--12707 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
12650 ATGTAAAAAT
12660 AACAGTGACGATGAGATTACATAC
1 AACAGTGACGATGAGATTACATAC
12684 AACAGTGACGATGAGATTACATAC
1 AACAGTGACGATGAGATTACATAC
12708 TGTAACGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.21
Consensus pattern (24 bp):
AACAGTGACGATGAGATTACATAC
Found at i:14208 original size:9 final size:9
Alignment explanation
Indices: 14194--14225 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
14184 TTTTTATTAA
14194 TTTAAAATT
1 TTTAAAATT
14203 TTTAAAA-T
1 TTTAAAATT
14211 TTTAAAATT
1 TTTAAAATT
14220 TTTAAA
1 TTTAAA
14226 TGGCTTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
TTTAAAATT
Found at i:18778 original size:31 final size:33
Alignment explanation
Indices: 18711--18778 Score: 88
Period size: 31 Copynumber: 2.1 Consensus size: 33
18701 TATTAGATAT
* *
18711 AACAAAGTATTTAATTTTAAGTTGAATTATACC
1 AACAAAGTATTCAATTTTAAGTTCAATTATACC
18744 AACAAA-TATTCAATTTTAA-TTCAATTA-ACAC
1 AACAAAGTATTCAATTTTAAGTTCAATTATAC-C
18775 AACA
1 AACA
18779 GTCATTTTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 2 0.06
31 12 0.38
32 12 0.38
33 6 0.19
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.35
Consensus pattern (33 bp):
AACAAAGTATTCAATTTTAAGTTCAATTATACC
Found at i:20076 original size:51 final size:49
Alignment explanation
Indices: 20015--20118 Score: 172
Period size: 51 Copynumber: 2.1 Consensus size: 49
20005 AACGATTATG
20015 ATTTTAATAATTTTATATTTTAAAAAATAATTTTAAATTAATTATAAAATA
1 ATTTTAATAATTTTATATTTTAAAAAATAATTTT-AA-TAATTATAAAATA
* *
20066 ATTTTAATAATTTTATATTTTAAAAAATAATTTTAATAATTTTAAAATC
1 ATTTTAATAATTTTATATTTTAAAAAATAATTTTAATAATTATAAAATA
20115 ATTT
1 ATTT
20119 ACTGATGTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
49 15 0.29
50 2 0.04
51 34 0.67
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (49 bp):
ATTTTAATAATTTTATATTTTAAAAAATAATTTTAATAATTATAAAATA
Found at i:20081 original size:22 final size:21
Alignment explanation
Indices: 20020--20082 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
20010 TTATGATTTT
*
20020 AATAATTTTAT-ATTTTAAAA
1 AATAATTTTATAATTTTATAA
20040 AATAATTTTA-AATTAATTATAA
1 AATAATTTTATAATT--TTATAA
20062 AATAATTTTAATAATTTTATA
1 AATAATTTT-ATAATTTTATA
20083 TTTTAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
20 13 0.35
22 19 0.51
23 1 0.03
24 4 0.11
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AATAATTTTATAATTTTATAA
Found at i:20098 original size:29 final size:30
Alignment explanation
Indices: 20040--20111 Score: 110
Period size: 29 Copynumber: 2.4 Consensus size: 30
20030 TATTTTAAAA
*
20040 AATAATTTTAAATTAATTATAAAATAATTTT
1 AATAATTTTAAATT-ATTAAAAAATAATTTT
*
20071 AATAATTTTATATT-TTAAAAAATAATTTT
1 AATAATTTTAAATTATTAAAAAATAATTTT
20100 AATAATTTTAAA
1 AATAATTTTAAA
20112 ATCATTTACT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 25 0.66
31 13 0.34
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (30 bp):
AATAATTTTAAATTATTAAAAAATAATTTT
Found at i:20112 original size:20 final size:20
Alignment explanation
Indices: 20040--20118 Score: 67
Period size: 20 Copynumber: 4.0 Consensus size: 20
20030 TATTTTAAAA
* *
20040 AATAATTTTAAATTAATTATAA
1 AATAATTTTAAAATAATT-T-T
20062 AATAATTTT--AATAATTTT
1 AATAATTTTAAAATAATTTT
20080 -AT-ATTTTAAAAAATAATTTT
1 AATAATTTT--AAAATAATTTT
*
20100 AATAATTTTAAAATCATTT
1 AATAATTTTAAAATAATTT
20119 ACTGATGTGA
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
16 5 0.10
17 2 0.04
19 1 0.02
20 24 0.50
21 2 0.04
22 14 0.29
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (20 bp):
AATAATTTTAAAATAATTTT
Found at i:21038 original size:79 final size:79
Alignment explanation
Indices: 20906--21064 Score: 300
Period size: 79 Copynumber: 2.0 Consensus size: 79
20896 ACAGTCATTC
*
20906 AACTTTGATTTCTTCTTTTTCTTTTTCTCTTCTTCTACCACCCAACTAAGGTTCTTCAATTGGGA
1 AACTTTGATTTCTTCTTTTTCTTTTTCCCTTCTTCTACCACCCAACTAAGGTTCTTCAATTGGGA
20971 TTGTTTAAATGACA
66 TTGTTTAAATGACA
*
20985 AACTTTGATTTCTTCTTTTTCTTTTTCCCTTCTTCTACCACCCAACTAGGGTTCTTCAATTGGGA
1 AACTTTGATTTCTTCTTTTTCTTTTTCCCTTCTTCTACCACCCAACTAAGGTTCTTCAATTGGGA
21050 TTGTTTAAATGACA
66 TTGTTTAAATGACA
21064 A
1 A
21065 CATAGACTCC
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.21, C:0.22, G:0.11, T:0.46
Consensus pattern (79 bp):
AACTTTGATTTCTTCTTTTTCTTTTTCCCTTCTTCTACCACCCAACTAAGGTTCTTCAATTGGGA
TTGTTTAAATGACA
Found at i:24799 original size:16 final size:16
Alignment explanation
Indices: 24777--24823 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
24767 ACAAATATTT
24777 TTTTAAAATATAATAAA
1 TTTTAAAATATAA-AAA
24794 -TTTAAATATATAAAAA
1 TTTTAAA-ATATAAAAA
*
24810 TTTTAAAAAATAAA
1 TTTTAAAATATAAA
24824 GTGTATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 15 0.56
17 12 0.44
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TTTTAAAATATAAAAA
Found at i:25867 original size:20 final size:20
Alignment explanation
Indices: 25840--25919 Score: 62
Period size: 20 Copynumber: 4.2 Consensus size: 20
25830 AATATATTGT
*
25840 ATTT-TTATATGTTTTT-TAA
1 ATTTATTATAT-TTTTTAAAA
25859 ATTTATTATATTTTTTAAAA
1 ATTTATTATATTTTTTAAAA
* * *
25879 ATTTA-TGTA-TTTTTATAT
1 ATTTATTATATTTTTTAAAA
*
25897 ATTTTTTA-ATTTTTTTAAAA
1 ATTTATTATA-TTTTTTAAAA
25917 ATT
1 ATT
25920 AAGATCAAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
18 12 0.25
19 13 0.27
20 23 0.48
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTTATTATATTTTTTAAAA
Found at i:25867 original size:47 final size:46
Alignment explanation
Indices: 25809--25905 Score: 126
Period size: 47 Copynumber: 2.1 Consensus size: 46
25799 CTTTATTAGG
*
25809 TTAAATTA-T-TATTTTATATAAAATATATTGTATTTTTATATGTTTT
1 TTAAATTATTATATTTTATA-AAAATATA-TGTATTTTTATATATTTT
* *
25855 TTAAATTTATTATATTTTTTAAAAATTTATGTATTTTTATATATTTT
1 TTAAA-TTATTATATTTTATAAAAATATATGTATTTTTATATATTTT
25902 TTAA
1 TTAA
25906 TTTTTTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
46 5 0.11
47 24 0.53
48 8 0.18
49 8 0.18
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (46 bp):
TTAAATTATTATATTTTATAAAAATATATGTATTTTTATATATTTT
Found at i:27309 original size:4 final size:4
Alignment explanation
Indices: 27300--27336 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
27290 AATATCTCAT
27300 ATTA ATTA ATTA A-TA ATTA ATTA ATTA ATTA ATTA AT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA AT
27337 AAAATATTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
ATTA
Found at i:35010 original size:30 final size:30
Alignment explanation
Indices: 34967--35341 Score: 234
Period size: 30 Copynumber: 12.6 Consensus size: 30
34957 ATTTTATTTA
* *
34967 AAAAATT-CGATTTTGACCCTTAAACTTTCT
1 AAAAATTAC-ATTTTAACCCTCAAACTTTCT
34997 AAAAATCTA-ATTTTAACCCTCAAACTTTCT
1 AAAAAT-TACATTTTAACCCTCAAACTTTCT
* ** * * *
35027 AAAGATTTGATTTTGACCTCCCAAACTTTTT
1 AAAAATTACATTTTAACC-CTCAAACTTTCT
* * * *
35058 AAAAATCACCTTTTATCCCTAAAACTTT-T
1 AAAAATTACATTTTAACCCTCAAACTTTCT
*
35087 CAAAAATTACATTTT-ACCCCCAAACTTTCT
1 -AAAAATTACATTTTAACCCTCAAACTTTCT
** *
35117 AAAAATTACATTTTAACCCTTGAA-TTTTT
1 AAAAATTACATTTTAACCCTCAAACTTTCT
* *
35146 ATAAAAATACATTTTACCCCT-AAACTTTCT
1 A-AAAATTACATTTTAACCCTCAAACTTTCT
* * * *
35176 AGAAATT-CAATTTTAACCCT-TAATTTTTT
1 AAAAATTAC-ATTTTAACCCTCAAACTTTCT
* * * *
35205 GAAAATCACATTTTAACCCTCAAATTTTCCA
1 AAAAATTACATTTTAACCCTCAAACTTT-CT
* * *
35236 AAAAATTACATTTTGA-CC-CAAAATTTTT
1 AAAAATTACATTTTAACCCTCAAACTTTCT
* * * *
35264 CCAAAATTACATTTTTACCCTAAAACATTCCT
1 -AAAAATTACATTTTAACCCTCAAAC-TTTCT
*** * *
35296 -AAAGCCACATTTTGACCC-CAAACTTTTT
1 AAAAATTACATTTTAACCCTCAAACTTTCT
*
35324 AAAAATCACATTTTAACC
1 AAAAATTACATTTTAACC
35342 AAATTCTCTT
Statistics
Matches: 264, Mismatches: 63, Indels: 37
0.73 0.17 0.10
Matches are distributed among these distances:
28 4 0.02
29 107 0.41
30 112 0.42
31 38 0.14
32 3 0.01
ACGTcount: A:0.37, C:0.22, G:0.03, T:0.38
Consensus pattern (30 bp):
AAAAATTACATTTTAACCCTCAAACTTTCT
Found at i:35131 original size:59 final size:59
Alignment explanation
Indices: 34988--35283 Score: 244
Period size: 59 Copynumber: 5.0 Consensus size: 59
34978 TTTGACCCTT
* * **
34988 AAACTTTCTAAAAATCTA-ATTTTAACCCTCAAAC-TTTCTAAAGATTTGATTTTGACCTCCC
1 AAACTTTCTAAAAAT-TACATTTTAACCCTAAAACTTTTC-AAAAATTACATTTT-ACC-CCC
* * * *
35049 AAACTTTTTAAAAATCACCTTTTATCCCTAAAACTTTTCAAAAATTACATTTTACCCCC
1 AAACTTTCTAAAAATTACATTTTAACCCTAAAACTTTTCAAAAATTACATTTTACCCCC
** * * *
35108 AAACTTTCTAAAAATTACATTTTAACCCTTGAA-TTTTTATAAAAATACATTTTACCCCT
1 AAACTTTCTAAAAATTACATTTTAACCCTAAAACTTTTCA-AAAATTACATTTTACCCCC
* * * ** * *
35167 AAACTTTCTAGAAATT-CAATTTTAACCCT-TAATTTTTTGAAAATCACATTTTAACCCTC
1 AAACTTTCTAAAAATTAC-ATTTTAACCCTAAAACTTTTCAAAAATTACATTTT-ACCCCC
* * * * *
35226 AAATTTTCCAAAAAATTACATTTTGACCC-AAAATTTTTCCAAAATTACATTTTTACCC
1 AAACTTT-CTAAAAATTACATTTTAACCCTAAAACTTTTCAAAAATTACA-TTTTACCC
35284 TAAAACATTC
Statistics
Matches: 193, Mismatches: 32, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
58 19 0.10
59 88 0.46
60 39 0.20
61 43 0.22
62 4 0.02
ACGTcount: A:0.37, C:0.22, G:0.02, T:0.39
Consensus pattern (59 bp):
AAACTTTCTAAAAATTACATTTTAACCCTAAAACTTTTCAAAAATTACATTTTACCCCC
Found at i:41300 original size:49 final size:49
Alignment explanation
Indices: 41228--41321 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
41218 CGGGTAATGG
*
41228 AGTTGGGGCAGTCTTGGTATCACTAAAAGGAGACCACTATCCTTTTACT
1 AGTTGGGCCAGTCTTGGTATCACTAAAAGGAGACCACTATCCTTTTACT
*
41277 AGTTGGGCCAGTCTTGGTATCACTAGAAGGAGACCACTATCCTTT
1 AGTTGGGCCAGTCTTGGTATCACTAAAAGGAGACCACTATCCTTT
41322 CATTAGTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (49 bp):
AGTTGGGCCAGTCTTGGTATCACTAAAAGGAGACCACTATCCTTTTACT
Found at i:43926 original size:50 final size:50
Alignment explanation
Indices: 43755--44286 Score: 242
Period size: 49 Copynumber: 10.9 Consensus size: 50
43745 GGAAGGATTG
** * * *
43755 AGGCCGCAACGACGAATTCGTTACCTTAGAAGATAT-AATGGGAAAGGTTA
1 AGGCCGCAACGGTGAACTCGGTACCATAGAAGATATGAA-GGGAAAGGTTA
* *
43805 AGGCCGTAACGGTGAACTCGGTACCAT-GAAGAGATGAAGGGAAAGGTTA
1 AGGCCGCAACGGTGAACTCGGTACCATAGAAGATATGAAGGGAAAGGTTA
* ** * * * * * *
43854 AGGCCACAATAGCGAACCCGGTATCTTAGAAGATGTGATGGGAAAGGTTA
1 AGGCCGCAACGGTGAACTCGGTACCATAGAAGATATGAAGGGAAAGGTTA
*
43904 AGGTCGCAACGGTGAACTCGGTACCATA-AAGATATGAAGGGAAAGGTTA
1 AGGCCGCAACGGTGAACTCGGTACCATAGAAGATATGAAGGGAAAGGTTA
**** * * * * *
43953 AGGTTATAATGGCGAACTCGGTACCAT-GAAGAGATGAAAGGAAAGGTTG
1 AGGCCGCAACGGTGAACTCGGTACCATAGAAGATATGAAGGGAAAGGTTA
* **** * * * *
44002 AGGGCGCAACAACAAACCCTGTACCTTAGAAG--AT-------AAGGTTT
1 AGGCCGCAACGGTGAACTCGGTACCATAGAAGATATGAAGGGAAAGGTTA
* * * * *
44043 AGGCTGCAACGGCGAAC-CTGATACCAT-GAAGATATGAAGAGAAAGGTTG
1 AGGCCGCAACGGTGAACTC-GGTACCATAGAAGATATGAAGGGAAAGGTTA
* **** * * * * *
44092 AGGCTGCAATAACGAACCCGGTACCTTTGAAGATATGATGGGAAAGGTTG
1 AGGCCGCAACGGTGAACTCGGTACCATAGAAGATATGAAGGGAAAGGTTA
* * ** * *
44142 AGGTCGCAATGGCAAAC-CTGGTACCAT-GAAGATTTGAAGGG-AAGGATTG
1 AGGCCGCAACGGTGAACTC-GGTACCATAGAAGATATGAAGGGAAAGG-TTA
* * ** * * * * * *
44191 AGGTCGCTACGACGAA-TCCGATACC-TTGAAAGATGTGATGAGAAAGGTTG
1 AGGCCGCAACGGTGAACT-CGGTACCATAG-AAGATATGAAGGGAAAGGTTA
* * *
44241 TGGCCGCAACGGCGAACTCGGTACCGTA-AAGATATGAAGGGAAAGG
1 AGGCCGCAACGGTGAACTCGGTACCATAGAAGATATGAAGGGAAAGG
44287 CTGAGGTCGT
Statistics
Matches: 368, Mismatches: 89, Indels: 51
0.72 0.18 0.10
Matches are distributed among these distances:
40 5 0.01
41 23 0.06
42 2 0.01
48 7 0.02
49 187 0.51
50 138 0.38
51 6 0.02
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (50 bp):
AGGCCGCAACGGTGAACTCGGTACCATAGAAGATATGAAGGGAAAGGTTA
Found at i:44108 original size:49 final size:48
Alignment explanation
Indices: 44036--44314 Score: 172
Period size: 49 Copynumber: 5.7 Consensus size: 48
44026 CTTAGAAGAT
* * *
44036 AAGGTTTAGGCTGCAACGGCGAACCTGATACCATGAAGATATGAAGAGA
1 AAGGTTGAGGCTGCAATGGCGAACCTGGTACCATGAAGATATGAAG-GA
** * * *
44085 AAGGTTGAGGCTGCAATAACGAACCCGGTACCTTTGAAGATATGATGGGA
1 AAGGTTGAGGCTGCAATGGCGAACCTGGTACC-ATGAAGATATGA-AGGA
* * *
44135 AAGGTTGAGG-TCGCAATGGCAAACCTGGTACCATGAAGATTTGAAGGG
1 AAGGTTGAGGCT-GCAATGGCGAACCTGGTACCATGAAGATATGAAGGA
* * * * * * *
44183 AAGGATTGAGG-TCGCTACGACGAATCC-GATACCTTGAAAGATGTGATGAGA
1 AAGG-TTGAGGCT-GCAATGGCGAA-CCTGGTACCATG-AAGATATGAAG-GA
* * * * *
44234 AAGGTTGTGGCCGCAACGGCGAA-CTCGGTACCGTAAAGATATGAAGGGA
1 AAGGTTGAGGCTGCAATGGCGAACCT-GGTACCATGAAGATATGAA-GGA
* * * *
44283 AAGGCTGAGG-TCGTAAAGGCGAACCTAGTACC
1 AAGGTTGAGGCT-GCAATGGCGAACCTGGTACC
44315 CTTAGAAACA
Statistics
Matches: 177, Mismatches: 40, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
48 7 0.04
49 91 0.51
50 73 0.41
51 6 0.03
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.19
Consensus pattern (48 bp):
AAGGTTGAGGCTGCAATGGCGAACCTGGTACCATGAAGATATGAAGGA
Found at i:44173 original size:99 final size:98
Alignment explanation
Indices: 44036--44295 Score: 274
Period size: 99 Copynumber: 2.6 Consensus size: 98
44026 CTTAGAAGAT
* * *
44036 AAGGTTTAGGCTGCAACGGCGAACCTGATACCATGAAGATATGAAGAGAAAGGTTGAGG-CTGCA
1 AAGGTTGAGGCCGCAACGGCGAACCTGGTACCATGAAGATATGAAG-GAAAGGTTGAGGTC-GCA
* * *
44100 ATAACGAACCCGGTACCTTTG-AAGATATGATGGGA
64 ACAACGAACCCGATACC-TTGAAAGATATGATGAGA
* * * * * *
44135 AAGGTTGAGGTCGCAATGGCAAACCTGGTACCATGAAGATTTGAAGGGAAGGATTGAGGTCGCTA
1 AAGGTTGAGGCCGCAACGGCGAACCTGGTACCATGAAGATATGAAGGAAAGG-TTGAGGTCGCAA
* * *
44200 CGACGAATCCGATACCTTGAAAGATGTGATGAGA
65 CAACGAACCCGATACCTTGAAAGATATGATGAGA
* * * *
44234 AAGGTTGTGGCCGCAACGGCGAA-CTCGGTACCGTAAAGATATGAAGGGAAAGGCTGAGGTCG
1 AAGGTTGAGGCCGCAACGGCGAACCT-GGTACCATGAAGATATGAA-GGAAAGGTTGAGGTCG
44296 TAAAGGCGAA
Statistics
Matches: 132, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
98 10 0.08
99 115 0.87
100 7 0.05
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.20
Consensus pattern (98 bp):
AAGGTTGAGGCCGCAACGGCGAACCTGGTACCATGAAGATATGAAGGAAAGGTTGAGGTCGCAAC
AACGAACCCGATACCTTGAAAGATATGATGAGA
Found at i:46570 original size:30 final size:30
Alignment explanation
Indices: 46534--46689 Score: 165
Period size: 30 Copynumber: 5.2 Consensus size: 30
46524 ATTTTATTTA
*
46534 AAAAATTCGATTTTGACCCTTAAACTTTCC
1 AAAAATTTGATTTTGACCCTTAAACTTTCC
* * *
46564 AAAAATTTGATTTTAACCCCTAAACTTTCT
1 AAAAATTTGATTTTGACCCTTAAACTTTCC
*
46594 AAAAATTTGATTTTGACCCTTAAACTTTCAA
1 AAAAATTTGATTTTGACCCTTAAACTTTC-C
* * * *
46625 AAAAAATT-ACATTTGA-CCTCAAACTTTCT
1 AAAAATTTGA-TTTTGACCCTTAAACTTTCC
* * *
46654 AGAAATTTAATTTTGACCC-TAAATTTTCC
1 AAAAATTTGATTTTGACCCTTAAACTTTCC
46683 AAAAATT
1 AAAAATT
46690 ACATTTTAAC
Statistics
Matches: 104, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
29 24 0.23
30 68 0.65
31 12 0.12
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (30 bp):
AAAAATTTGATTTTGACCCTTAAACTTTCC
Found at i:46628 original size:60 final size:58
Alignment explanation
Indices: 46534--46699 Score: 190
Period size: 60 Copynumber: 2.8 Consensus size: 58
46524 ATTTTATTTA
*
46534 AAAAATTCGATTTTGACCCTTAAACTTTCCAAAAATTTGATTTTAACCCCTAAACTTTCT
1 AAAAATTTGATTTTGACCCTTAAACTTTCCAAAAATTT-ATTTTAACCCC-AAACTTTCT
* * * * *
46594 AAAAATTTGATTTTGACCCTTAAACTTTCAAAAAAAATTACATTTGACCTCAAACTTTCT
1 AAAAATTTGATTTTGACCCTTAAACTTTC-CAAAAATTTA-TTTTAACCCCAAACTTTCT
* * * *
46654 AGAAATTTAATTTTGACCC-TAAATTTTCCAAAAATTACATTTTAAC
1 AAAAATTTGATTTTGACCCTTAAACTTTCCAAAAATT-TATTTTAAC
46700 GTAAAATTTT
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
58 11 0.12
59 9 0.10
60 55 0.62
61 14 0.16
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.38
Consensus pattern (58 bp):
AAAAATTTGATTTTGACCCTTAAACTTTCCAAAAATTTATTTTAACCCCAAACTTTCT
Found at i:46695 original size:29 final size:29
Alignment explanation
Indices: 46534--46793 Score: 163
Period size: 30 Copynumber: 8.8 Consensus size: 29
46524 ATTTTATTTA
46534 AAAAATT-CGATTTTGACCCTTAAACTTTCC
1 AAAAATTAC-ATTTTGACCC-TAAACTTTCC
** * *
46564 AAAAATTTGATTTTAACCCCTAAACTTTCT
1 AAAAATTACATTTTGA-CCCTAAACTTTCC
** *
46594 AAAAATTTGATTTTGACCCTTAAACTTTCAAA
1 AAAAATTACATTTTGACCC-TAAACTTTC--C
*
46626 AAAAATTACA-TTTGA-CCTCAAACTTTCT
1 AAAAATTACATTTTGACCCT-AAACTTTCC
* *
46654 AGAAATTTA-ATTTTGACCCTAAATTTTCC
1 A-AAAATTACATTTTGACCCTAAACTTTCC
* * *
46683 AAAAATTACATTTT-AACGTAAAATTTTTCC
1 AAAAATTACATTTTGACCCT-AAA-CTTTCC
* *
46713 -AAAATTACATTTTGACCTTAAAACCTTCC
1 AAAAATTACATTTTGACCCT-AAACTTTCC
* *** * **
46742 TAAAGCCACATTTTAACCCTAAACTTTTT
1 AAAAATTACATTTTGACCCTAAACTTTCC
* *
46771 AAAAATCACATTTTAACCCTAAA
1 AAAAATTACATTTTGACCCTAAA
46794 TTCTCTGAAA
Statistics
Matches: 187, Mismatches: 29, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
28 11 0.06
29 74 0.40
30 86 0.46
31 8 0.04
32 8 0.04
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (29 bp):
AAAAATTACATTTTGACCCTAAACTTTCC
Found at i:49314 original size:8 final size:9
Alignment explanation
Indices: 49274--49315 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
49264 AAATTTATAA
49274 AAAAAATAT
1 AAAAAATAT
49283 AAAAAAATAT
1 -AAAAAATAT
*
49293 AAAGAAATTT
1 AAA-AAATAT
49303 AAAAAAT-T
1 AAAAAATAT
49311 AAAAA
1 AAAAA
49316 TATTCTAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 6 0.20
9 7 0.23
10 17 0.57
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (9 bp):
AAAAAATAT
Found at i:57191 original size:17 final size:17
Alignment explanation
Indices: 57156--57197 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
57146 AAAAAAAGTA
*
57156 GTTACAAGAATATGAAAG
1 GTTA-AAGAAGATGAAAG
*
57174 GTTAAAGAAGATGGAAG
1 GTTAAAGAAGATGAAAG
57191 GTTAAAG
1 GTTAAAG
57198 GTCAAAGGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.48, C:0.02, G:0.29, T:0.21
Consensus pattern (17 bp):
GTTAAAGAAGATGAAAG
Found at i:62248 original size:11 final size:11
Alignment explanation
Indices: 62234--62303 Score: 59
Period size: 11 Copynumber: 6.4 Consensus size: 11
62224 ATATTTAAAT
62234 AATAATAACAA
1 AATAATAACAA
62245 AATAATAACAA
1 AATAATAACAA
* *
62256 TATAATAATAA
1 AATAATAACAA
* * *
62267 AATGACAGCAA
1 AATAATAACAA
* *
62278 AACAATAAGAA
1 AATAATAACAA
* *
62289 AACAATGACAA
1 AATAATAACAA
62300 AATA
1 AATA
62304 GCAAGAAAAC
Statistics
Matches: 44, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 44 1.00
ACGTcount: A:0.67, C:0.10, G:0.06, T:0.17
Consensus pattern (11 bp):
AATAATAACAA
Found at i:62300 original size:22 final size:22
Alignment explanation
Indices: 62275--62316 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
62265 AAAATGACAG
*
62275 CAAAACAATAAGAAAACAATGA
1 CAAAACAACAAGAAAACAATGA
* *
62297 CAAAATAGCAAGAAAACAAT
1 CAAAACAACAAGAAAACAAT
62317 ATTTTTTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.67, C:0.14, G:0.10, T:0.10
Consensus pattern (22 bp):
CAAAACAACAAGAAAACAATGA
Found at i:71226 original size:18 final size:19
Alignment explanation
Indices: 71205--71246 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
71195 TGAAAAAAAA
*
71205 TTATTTGAAA-ATTTTTAT
1 TTATTTAAAATATTTTTAT
71223 TTA-TTAAAATTATTTTTAT
1 TTATTTAAAA-TATTTTTAT
71242 TTATT
1 TTATT
71247 ATCTTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 5 0.25
18 3 0.15
19 11 0.55
20 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTATTTAAAATATTTTTAT
Found at i:72407 original size:145 final size:145
Alignment explanation
Indices: 72134--72407 Score: 345
Period size: 145 Copynumber: 1.9 Consensus size: 145
72124 GACTCCAAAG
* * * * * *
72134 AGTCTAAACAAATGAAAACAATGCATTGGCCAAGCCTTGACATTGTGGCATCGGTACAACTCCTA
1 AGTCTAAACAAATCAAAACAATGCAGTGGCCAAGCCTTGACACTATGGCATCGATACAACTCCCA
* * * *** ** * *
72199 GTCGTACCAATACAAGTCCCCGCTACTATAGATAATTACATTCTGTTTTATTTGTTACGAAACCA
66 ATCGTACCAATACAAGTCCCCGCTACTATAGATAATCACATTCAGTCAAATACGTAAAGAAACCA
72264 CATGGATCAAATAAA
131 CATGGATCAAATAAA
*
72279 AGTCTAAACAAATCAAAACAATGCAGTGGTCAAGCCTTGACACTATGGCATCGATACAACTCCCA
1 AGTCTAAACAAATCAAAACAATGCAGTGGCCAAGCCTTGACACTATGGCATCGATACAACTCCCA
* *
72344 ATTGTACCAATACAAGTCCCCGCTACTATAGATAA-CACATTCAAGTCAAATGACG-AAATAAAC
66 ATCGTACCAATACAAGTCCCCGCTACTATAGATAATCACATTC-AGTCAAAT-ACGTAAAGAAAC
72407 C
129 C
72408 TTGACTAATG
Statistics
Matches: 108, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
144 6 0.06
145 101 0.94
146 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (145 bp):
AGTCTAAACAAATCAAAACAATGCAGTGGCCAAGCCTTGACACTATGGCATCGATACAACTCCCA
ATCGTACCAATACAAGTCCCCGCTACTATAGATAATCACATTCAGTCAAATACGTAAAGAAACCA
CATGGATCAAATAAA
Found at i:73544 original size:27 final size:26
Alignment explanation
Indices: 73466--73546 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 26
73456 ATATCAAATT
*
73466 ATTTAAATATCATTTATTAATT-TTAAA
1 ATTTAAA-ATAATTTATTAATTATT-AA
* *
73493 ATTTAAAATATTTTATGT-ATAATTAA
1 ATTTAAAATAATTTAT-TAATTATTAA
73519 ATTTACAAATAATTTATTAATTATTAA
1 ATTTA-AAATAATTTATTAATTATTAA
73546 A
1 A
73547 AAGTATATGA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
26 17 0.38
27 28 0.62
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (26 bp):
ATTTAAAATAATTTATTAATTATTAA
Found at i:78444 original size:14 final size:12
Alignment explanation
Indices: 78389--78436 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
78379 ATAAATTAAT
78389 TTTTTTAAAAATA
1 TTTTTTAAAAA-A
**
78402 TTTTTTTTAAAA
1 TTTTTTAAAAAA
* *
78414 TTTTATAATAAA
1 TTTTTTAAAAAA
78426 TTTTTTAAAAA
1 TTTTTTAAAAA
78437 TGATTTTTAT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
12 18 0.67
13 9 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTTTTAAAAAA
Found at i:78956 original size:3 final size:3
Alignment explanation
Indices: 78948--78983 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
78938 GGAATTAAAA
* *
78948 AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG ATG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
78984 TTTTGCATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:81387 original size:24 final size:25
Alignment explanation
Indices: 81344--81391 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 25
81334 AGTCATATCT
81344 AACTTAGTATAAAAAAAATGTCTTA
1 AACTTAGTATAAAAAAAATGTCTTA
81369 AACTTAGTAT-AAAAAAATGTCTT
1 AACTTAGTATAAAAAAAATGTCTT
81392 GTTAAAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.33
Consensus pattern (25 bp):
AACTTAGTATAAAAAAAATGTCTTA
Found at i:84111 original size:18 final size:18
Alignment explanation
Indices: 84088--84122 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
84078 TTAATTCCTA
84088 TATTTCTT-TCTTTGCTTC
1 TATTTCTTCTC-TTGCTTC
84106 TATTTCTTCTCTTGCTT
1 TATTTCTTCTCTTGCTT
84123 TTCTCTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.06, C:0.23, G:0.06, T:0.66
Consensus pattern (18 bp):
TATTTCTTCTCTTGCTTC
Found at i:84803 original size:14 final size:14
Alignment explanation
Indices: 84784--84810 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84774 TCATCAATCC
84784 CTGTTTCTCTTTCT
1 CTGTTTCTCTTTCT
84798 CTGTTTCTCTTTC
1 CTGTTTCTCTTTC
84811 ATATCTTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.30, G:0.07, T:0.63
Consensus pattern (14 bp):
CTGTTTCTCTTTCT
Found at i:87629 original size:42 final size:42
Alignment explanation
Indices: 87441--87658 Score: 208
Period size: 42 Copynumber: 5.2 Consensus size: 42
87431 TTGATGTATA
* * * * *
87441 AAAGGAAGACTCATGTCTCGGGATGAGCGTAAGATTAAGTTT
1 AAAGGAAGACTCATGTCTCGGAAAGAGCATGAGATTATGTTT
* * ** **
87483 AAATGGAAGACTCGTGACTCAAAAAGAGCATGAGACAATG-TT
1 AAA-GGAAGACTCATGTCTCGGAAAGAGCATGAGATTATGTTT
* * * *
87525 AAAGGAAGACTCGTGTCTCGAAAAAAGCGTGAGATTATGTTT
1 AAAGGAAGACTCATGTCTCGGAAAGAGCATGAGATTATGTTT
*
87567 AAAGGAATACTCATGTCTCGGAAAGAGCATGAGATTATGTTT
1 AAAGGAAGACTCATGTCTCGGAAAGAGCATGAGATTATGTTT
* * * * *
87609 AAAGGAAGATTTATGTCTCGG-TAGAGCATAAGATTAT-TTGA
1 AAAGGAAGACTCATGTCTCGGAAAGAGCATGAGATTATGTT-T
87650 AAAGGAAGA
1 AAAGGAAGA
87659 TTTATTACTC
Statistics
Matches: 145, Mismatches: 28, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
40 2 0.01
41 53 0.37
42 65 0.45
43 25 0.17
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.25
Consensus pattern (42 bp):
AAAGGAAGACTCATGTCTCGGAAAGAGCATGAGATTATGTTT
Found at i:87654 original size:41 final size:40
Alignment explanation
Indices: 87556--87703 Score: 129
Period size: 41 Copynumber: 3.6 Consensus size: 40
87546 AAAAAGCGTG
* * * * * *
87556 AGATTATGTTTAAAGGAATACTCATGTCTCGGAAAGAGCATG
1 AGATTAT-TTAAAAGGAAGATTTATGTCTCGG-TAGAGCATA
*
87598 AGATTATGTTTAAAGGAAGATTTATGTCTCGGTAGAGCATA
1 AGATTAT-TTAAAAGGAAGATTTATGTCTCGGTAGAGCATA
*
87639 AGATTATTTGAAAAGGAAGATTTAT-TACTCGAT-GAAGCATA
1 AGATTATTT-AAAAGGAAGATTTATGT-CTCGGTAG-AGCATA
**
87680 AGATCGTTTAAAGAGGAAGATTTA
1 AGATTATTTAAA-AGGAAGATTTA
87704 CGACTCTAAT
Statistics
Matches: 93, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
40 7 0.08
41 57 0.61
42 29 0.31
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (40 bp):
AGATTATTTAAAAGGAAGATTTATGTCTCGGTAGAGCATA
Found at i:93572 original size:21 final size:22
Alignment explanation
Indices: 93546--93590 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
93536 GCTTTTGATG
*
93546 GATTTG-TATG-TTTGATGGTTA
1 GATTTGTTATGATTT-AGGGTTA
93567 GATTTGTTATGATTTAGGGTTA
1 GATTTGTTATGATTTAGGGTTA
93589 GA
1 GA
93591 GGACTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 12 0.57
23 3 0.14
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (22 bp):
GATTTGTTATGATTTAGGGTTA
Found at i:94147 original size:42 final size:42
Alignment explanation
Indices: 94038--94157 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 42
94028 GTCTCGAGAT
* * * * **
94038 GAGTGTGAGATTATGTTTAAATGTAAGATTTGTGACTCGGAAA
1 GAGTGTGAGATTATGTTTAAA-GGAAGACTTATGTCTCAAAAA
** * *
94081 GAGCATGAGA-AATG-TTAAAGGAAGACTCATGTCTCAAAAA
1 GAGTGTGAGATTATGTTTAAAGGAAGACTTATGTCTCAAAAA
94121 GAGTGTGAGATTATGTTTAAAGGAAGACTTATGTCTC
1 GAGTGTGAGATTATGTTTAAAGGAAGACTTATGTCTC
94158 GGTAGAGCAT
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
40 22 0.36
41 8 0.13
42 23 0.38
43 8 0.13
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (42 bp):
GAGTGTGAGATTATGTTTAAAGGAAGACTTATGTCTCAAAAA
Found at i:96958 original size:38 final size:38
Alignment explanation
Indices: 96887--96962 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 38
96877 TTATATATTC
*
96887 ATCAATCCCTATTTTTCTTTCTCTATTTCTCTTTCTTT
1 ATCAATCCCTATTTTTCTTTCTCTATTTATCTTTCTTT
*
96925 ATCAATCCTTATTTTTCTTTC-CT-TGCTTATCTTTCTTT
1 ATCAATCCCTATTTTTCTTTCTCTAT--TTATCTTTCTTT
96963 TGTTGCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 1 0.03
37 2 0.06
38 31 0.91
ACGTcount: A:0.13, C:0.25, G:0.01, T:0.61
Consensus pattern (38 bp):
ATCAATCCCTATTTTTCTTTCTCTATTTATCTTTCTTT
Found at i:97648 original size:14 final size:14
Alignment explanation
Indices: 97629--97670 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
97619 TCCATATTTT
97629 TCTTTCTTTTCTTC
1 TCTTTCTTTTCTTC
*
97643 TCTTTCTTCTCTTGC
1 TCTTTCTTTTCTT-C
*
97658 T-TTTCTTTACTTC
1 TCTTTCTTTTCTTC
97671 CCTTACAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 1 0.04
14 21 0.88
15 2 0.08
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.67
Consensus pattern (14 bp):
TCTTTCTTTTCTTC
Found at i:98904 original size:26 final size:25
Alignment explanation
Indices: 98868--98931 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
98858 AGCGATACTG
98868 GCTCGTAAGAGC-ATTATATTGCACTA
1 GCTCGTAAGAGCAATT-TATTG-ACTA
*
98894 GCTCGTAAGAGCAATTTATTGACTG
1 GCTCGTAAGAGCAATTTATTGACTA
*
98919 GTCTCGTATGAGC
1 G-CTCGTAAGAGC
98932 TAAAATTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 4 0.12
26 27 0.79
27 3 0.09
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
GCTCGTAAGAGCAATTTATTGACTA
Found at i:103538 original size:20 final size:22
Alignment explanation
Indices: 103513--103581 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
103503 TGGTGCTTTT
103513 TTTTTTACTGTTTTG-GTTG-A
1 TTTTTTACTGTTTTGAGTTGTA
* *
103533 TTTTTTGCTGTTTTTGAGTTGTT
1 TTTTTTACTG-TTTTGAGTTGTA
*
103556 TTTTTTATTGTTTTGA-TTGCTA
1 TTTTTTACTGTTTTGAGTTG-TA
103578 TTTT
1 TTTT
103582 CTTGTTATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 9 0.22
21 8 0.20
22 15 0.38
23 8 0.20
ACGTcount: A:0.09, C:0.04, G:0.17, T:0.70
Consensus pattern (22 bp):
TTTTTTACTGTTTTGAGTTGTA
Found at i:103553 original size:22 final size:20
Alignment explanation
Indices: 103513--103570 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
103503 TGGTGCTTTT
103513 TTTTTTACTGTTTTGGTTGA
1 TTTTTTACTGTTTTGGTTGA
* *
103533 TTTTTTGCTGTTTTTGAGTTGTT
1 TTTTTTACTG-TTTTG-GTTG-A
*
103556 TTTTTTATTGTTTTG
1 TTTTTTACTGTTTTG
103571 ATTGCTATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 9 0.29
21 5 0.16
22 9 0.29
23 8 0.26
ACGTcount: A:0.07, C:0.03, G:0.19, T:0.71
Consensus pattern (20 bp):
TTTTTTACTGTTTTGGTTGA
Found at i:103593 original size:12 final size:12
Alignment explanation
Indices: 103578--103635 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
103568 TTGATTGCTA
103578 TTTTCTTGTTAT
1 TTTTCTTGTTAT
*
103590 TTTTCCTGTTAT
1 TTTTCTTGTTAT
*
103602 TTTTGC-TGTTGT
1 TTTT-CTTGTTAT
* *
103614 TTTTGTTGCTAT
1 TTTTCTTGTTAT
*
103626 TTTTATTGTT
1 TTTTCTTGTT
103636 TTTAATGTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
12 36 0.97
13 1 0.03
ACGTcount: A:0.07, C:0.09, G:0.14, T:0.71
Consensus pattern (12 bp):
TTTTCTTGTTAT
Found at i:103593 original size:32 final size:31
Alignment explanation
Indices: 103551--103665 Score: 79
Period size: 32 Copynumber: 3.5 Consensus size: 31
103541 TGTTTTTGAG
*
103551 TTGTTTTTTTTATTGTTTTGATTGCTATTTTC
1 TTGTTATTTTTATTGTTTT-ATTGCTATTTTC
** * * *
103583 TTGTTATTTTTCCTGTTATTTTTGCTGTTGTTT
1 TTGTTATTTTTATTGTT-TTATTGCTATT-TTC
* *
103616 TTGTTGCTATTTTTATTGTTTTTAATGTTATTTTAC
1 TTG-T--TATTTTTATTG-TTTTATTGCTATTTT-C
103652 -TGTTATTTTTATTG
1 TTGTTATTTTTATTG
103666 CTGTTTTGGT
Statistics
Matches: 63, Mismatches: 13, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
32 32 0.51
33 7 0.11
34 2 0.03
35 4 0.06
36 16 0.25
37 2 0.03
ACGTcount: A:0.11, C:0.06, G:0.13, T:0.70
Consensus pattern (31 bp):
TTGTTATTTTTATTGTTTTATTGCTATTTTC
Found at i:103629 original size:68 final size:67
Alignment explanation
Indices: 103534--103661 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 67
103524 TTTGGTTGAT
* * *
103534 TTTTTGCTGTTTTTGAGTTGTTTTTTTTATTGTTTTGATTGCTATTTT-CTTGTTATTTTTCCTG
1 TTTTTGCTGTTTTTGAGTTGCTATTTTTATTGTTTTGAATGCTATTTTAC-TGTTATTTTTCCTG
103598 TTA
65 TTA
** * *
103601 TTTTTGCTGTTGTTTTTGTTGCTATTTTTATTGTTTTTAATGTTATTTTACTGTTATTTTT
1 TTTTTGCTGTT-TTTGAGTTGCTATTTTTATTGTTTTGAATGCTATTTTACTGTTATTTTT
103662 ATTGCTGTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 11 0.21
68 40 0.77
69 1 0.02
ACGTcount: A:0.10, C:0.06, G:0.14, T:0.70
Consensus pattern (67 bp):
TTTTTGCTGTTTTTGAGTTGCTATTTTTATTGTTTTGAATGCTATTTTACTGTTATTTTTCCTGT
TA
Found at i:103635 original size:24 final size:24
Alignment explanation
Indices: 103566--103689 Score: 62
Period size: 24 Copynumber: 5.3 Consensus size: 24
103556 TTTTTTATTG
*
103566 TTTTGATTGCTA-TTTTCTTGTTAT
1 TTTTG-TTGCTATTTTTATTGTTAT
** * ** *
103590 TTTTCCTGTTATTTTTGCTGTTGT
1 TTTTGTTGCTATTTTTATTGTTAT
103614 TTTTGTTGCTATTTTTATTGTT-T
1 TTTTGTTGCTATTTTTATTGTTAT
* *
103637 TTAATG-T--TA-TTTTACTGTTAT
1 TT-TTGTTGCTATTTTTATTGTTAT
* * ** *
103658 TTTTATTGCTGTTTTGGTTATTAT
1 TTTTGTTGCTATTTTTATTGTTAT
103682 TTTTGTTG
1 TTTTGTTG
103690 TTTGAATGTT
Statistics
Matches: 72, Mismatches: 21, Indels: 14
0.67 0.20 0.13
Matches are distributed among these distances:
20 10 0.14
21 6 0.08
23 9 0.12
24 47 0.65
ACGTcount: A:0.11, C:0.06, G:0.15, T:0.68
Consensus pattern (24 bp):
TTTTGTTGCTATTTTTATTGTTAT
Found at i:103659 original size:56 final size:55
Alignment explanation
Indices: 103584--103704 Score: 143
Period size: 56 Copynumber: 2.2 Consensus size: 55
103574 GCTATTTTCT
* * * * * *
103584 TGTTATTTTTCCTGTTATTTTTGCTGTTGTTTTTGTTGCTATTTTTATTGTTTTTAA
1 TGTTA-TTTTACTGTTATTTTTACTGCTGTTTTGGTTACTATTTTTATTG-TTTGAA
* * *
103641 TGTTATTTTACTGTTATTTTTATTGCTGTTTTGGTTATTATTTTTGTTGTTTGAA
1 TGTTATTTTACTGTTATTTTTACTGCTGTTTTGGTTACTATTTTTATTGTTTGAA
103696 TGTTATTTT
1 TGTTATTTT
103705 TTATGCGTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 14 0.25
56 36 0.65
57 5 0.09
ACGTcount: A:0.12, C:0.05, G:0.15, T:0.68
Consensus pattern (55 bp):
TGTTATTTTACTGTTATTTTTACTGCTGTTTTGGTTACTATTTTTATTGTTTGAA
Found at i:103661 original size:12 final size:12
Alignment explanation
Indices: 103584--103662 Score: 58
Period size: 12 Copynumber: 6.9 Consensus size: 12
103574 GCTATTTTCT
*
103584 TGTTATTTTTCC
1 TGTTATTTTTAC
*
103596 TGTTATTTTTGC
1 TGTTATTTTTAC
* **
103608 TGTTGTTTTTGT
1 TGTTATTTTTAC
*
103620 TGCTATTTTTA-
1 TGTTATTTTTAC
* *
103631 --TTGTTTTTAA
1 TGTTATTTTTAC
103641 TGTTA-TTTTAC
1 TGTTATTTTTAC
103652 TGTTATTTTTA
1 TGTTATTTTTA
103663 TTGCTGTTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
9 7 0.13
11 10 0.19
12 36 0.68
ACGTcount: A:0.13, C:0.06, G:0.13, T:0.68
Consensus pattern (12 bp):
TGTTATTTTTAC
Found at i:103679 original size:21 final size:21
Alignment explanation
Indices: 103653--103692 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
103643 TTATTTTACT
103653 GTTATT-TTTATTGCTGTTTTG
1 GTTATTATTT-TTGCTGTTTTG
*
103674 GTTATTATTTTTGTTGTTT
1 GTTATTATTTTTGCTGTTT
103693 GAATGTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.10, C:0.03, G:0.17, T:0.70
Consensus pattern (21 bp):
GTTATTATTTTTGCTGTTTTG
Found at i:103904 original size:38 final size:38
Alignment explanation
Indices: 103821--103902 Score: 94
Period size: 39 Copynumber: 2.1 Consensus size: 38
103811 TTAATATAAA
* * *
103821 TTTTTAATGTATTTTAAATTTATTTATTTTTTAATATT
1 TTTTTAATGTATTTTAAATGTATTTATATATTAATATT
*
103859 TATTTTAATGT-TTTTAAGTGTATTTGATATATTATATATT
1 T-TTTTAATGTATTTTAAATGTATTT-ATATATTA-ATATT
103899 TTTT
1 TTTT
103903 AAATTTGTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
38 13 0.35
39 18 0.49
40 6 0.16
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (38 bp):
TTTTTAATGTATTTTAAATGTATTTATATATTAATATT
Found at i:106107 original size:6 final size:6
Alignment explanation
Indices: 106096--106135 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
106086 AGGAGGTAGA
106096 GTTGGT GTTGGT GTTGGT GTTGGT GTTGGT GTTGGT GTTG
1 GTTGGT GTTGGT GTTGGT GTTGGT GTTGGT GTTGGT GTTG
106136 AAGAAGATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (6 bp):
GTTGGT
Found at i:110900 original size:66 final size:66
Alignment explanation
Indices: 110794--110928 Score: 270
Period size: 66 Copynumber: 2.0 Consensus size: 66
110784 TGTCAAGTGA
110794 TTTAATTTGATTTAATGGTTAAAATTTGGTGGGGGTGTATGTAGTTTTCTTTTAAAAAAAAATTA
1 TTTAATTTGATTTAATGGTTAAAATTTGGTGGGGGTGTATGTAGTTTTCTTTTAAAAAAAAATTA
110859 G
66 G
110860 TTTAATTTGATTTAATGGTTAAAATTTGGTGGGGGTGTATGTAGTTTTCTTTTAAAAAAAAATTA
1 TTTAATTTGATTTAATGGTTAAAATTTGGTGGGGGTGTATGTAGTTTTCTTTTAAAAAAAAATTA
110925 G
66 G
110926 TTT
1 TTT
110929 TCAAAAAAAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (66 bp):
TTTAATTTGATTTAATGGTTAAAATTTGGTGGGGGTGTATGTAGTTTTCTTTTAAAAAAAAATTA
G
Found at i:112136 original size:19 final size:19
Alignment explanation
Indices: 112109--112147 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
112099 CAGCCTTTTG
112109 TCGGCCTTCAACACTCTAA
1 TCGGCCTTCAACACTCTAA
*
112128 TCGGTCTTCAACACTCTAA
1 TCGGCCTTCAACACTCTAA
112147 T
1 T
112148 ATACAATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.33, G:0.10, T:0.31
Consensus pattern (19 bp):
TCGGCCTTCAACACTCTAA
Found at i:113327 original size:16 final size:16
Alignment explanation
Indices: 113279--113351 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 16
113269 TTATTAATGG
* *
113279 AAATGCAACGACAATG
1 AAATGCAATGACAATA
*
113295 AAATGCGAA-AACAAATA
1 AAATGC-AATGAC-AATA
113312 AAATGCAGA-GACAATAA
1 AAATGCA-ATGACAAT-A
*
113329 AAATGTAATGACAATA
1 AAATGCAATGACAATA
113345 AAATGCA
1 AAATGCA
113352 TGCGACTAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
16 20 0.43
17 27 0.57
ACGTcount: A:0.58, C:0.12, G:0.15, T:0.15
Consensus pattern (16 bp):
AAATGCAATGACAATA
Found at i:121601 original size:20 final size:20
Alignment explanation
Indices: 121542--121602 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
121532 AGAAGATGTT
* *
121542 TGTAAATGTAAATTCATAAA
1 TGTAAATGTAAATTCACAAG
* * **
121562 TATAAAAG-AAATAGATCAAG
1 TGTAAATGTAAATTCA-CAAG
121582 TGTAAATGTAAATTCACAAG
1 TGTAAATGTAAATTCACAAG
121602 T
1 T
121603 TGGTAACAGT
Statistics
Matches: 29, Mismatches: 10, Indels: 4
0.67 0.23 0.09
Matches are distributed among these distances:
19 5 0.17
20 19 0.66
21 5 0.17
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.30
Consensus pattern (20 bp):
TGTAAATGTAAATTCACAAG
Found at i:136504 original size:29 final size:28
Alignment explanation
Indices: 136471--136636 Score: 108
Period size: 29 Copynumber: 5.6 Consensus size: 28
136461 TTAATATAAT
136471 ATTTGGTACCTAAACTTCACTTTTTTCTA
1 ATTTGGTACCTAAACTTCA-TTTTTTCTA
* *
136500 ATTTGATACTTAAACTT--TTTTTTGACTCA
1 ATTTGGTACCTAAACTTCATTTTTT--CT-A
* *
136529 ATTTGGTACTTGAACTTGTCACTTTTTAT-TA
1 ATTTGGTACCTAAAC-T-TCA-TTTTT-TCTA
* *
136560 ATTTGATACCTAAACTT--TTTTTGGATCCA
1 ATTTGGTACCTAAACTTCATTTTT---TCTA
*
136589 ATTTGGTACCTGAACTTGGCATTTTTTTCTA
1 ATTTGGTACCTAAACTT--CA-TTTTTTCTA
136620 ATTTGGTACCTAAACTT
1 ATTTGGTACCTAAACTT
136637 TTTTAGATTC
Statistics
Matches: 108, Mismatches: 12, Indels: 32
0.71 0.08 0.21
Matches are distributed among these distances:
26 11 0.10
28 4 0.04
29 46 0.43
30 2 0.02
31 33 0.31
32 1 0.01
34 10 0.09
35 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.48
Consensus pattern (28 bp):
ATTTGGTACCTAAACTTCATTTTTTCTA
Found at i:136562 original size:60 final size:60
Alignment explanation
Indices: 136471--136658 Score: 233
Period size: 60 Copynumber: 3.2 Consensus size: 60
136461 TTAATATAAT
* * *
136471 ATTTGGTACCTAAAC-T-TCACTTTTTTCTAATTTGATACTTAAACTTTTTTTTGA-CTCA
1 ATTTGGTACCTGAACTTGTCACTTTTTTCTAATTTGATACCTAAACTTTTTTTGGATC-CA
*
136529 ATTTGGTACTTGAACTTGTCACTTTTTAT-TAATTTGATACCTAAACTTTTTTTGGATCCA
1 ATTTGGTACCTGAACTTGTCACTTTTT-TCTAATTTGATACCTAAACTTTTTTTGGATCCA
* * * * *
136589 ATTTGGTACCTGAACTTGGCATTTTTTTCTAATTTGGTACCTAAAC-TTTTTTAGATTCA
1 ATTTGGTACCTGAACTTGTCACTTTTTTCTAATTTGATACCTAAACTTTTTTTGGATCCA
*
136648 ATTTAGTACCT
1 ATTTGGTACCT
136659 AAATTTATTA
Statistics
Matches: 114, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
58 13 0.11
59 23 0.20
60 76 0.67
61 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.48
Consensus pattern (60 bp):
ATTTGGTACCTGAACTTGTCACTTTTTTCTAATTTGATACCTAAACTTTTTTTGGATCCA
Found at i:136898 original size:30 final size:31
Alignment explanation
Indices: 136862--136986 Score: 107
Period size: 31 Copynumber: 4.2 Consensus size: 31
136852 GGACCCCAAA
* *
136862 AAGTTTAATTACCAACTTA-AAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
* *
136892 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
* * **
136923 AAGTTTGAGTATCAAATT-GAACAAAA---AA
1 AAGTTTAAGTACCAAATTAGAA-AAAAGTGTC
* * *
136951 AAGTTTAGGTACCAAATTATAAAAAAATGTC
1 AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
136982 AAGTT
1 AAGTT
136987 CATATATCAA
Statistics
Matches: 73, Mismatches: 16, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
28 19 0.26
29 2 0.03
30 18 0.25
31 34 0.47
ACGTcount: A:0.47, C:0.10, G:0.15, T:0.28
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAGAAAAAAGTGTC
Found at i:136920 original size:31 final size:31
Alignment explanation
Indices: 136807--136986 Score: 96
Period size: 31 Copynumber: 6.0 Consensus size: 31
136797 TAAAAAAAAA
*
136807 TTAGGTACCAAATTAGGAAAAAGAGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
* * *
136838 TCAGGTACGAAATT-GGACCCCAAA-----AAGT
1 TTAGGTACCAAATTAGGA---AAAAGTGTCAAGT
** * *
136866 TTAATTACCAACTTA-AAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
136896 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
* ***
136927 TT-GAGTATCAAATT--GAACAAA--AAAAAGT
1 TTAG-GTACCAAATTAGGAA-AAAGTGTCAAGT
** *
136955 TTAGGTACCAAATTATAAAAAAATGTCAAGT
1 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
136986 T
1 T
136987 CATATATCAA
Statistics
Matches: 109, Mismatches: 23, Indels: 34
0.66 0.14 0.20
Matches are distributed among these distances:
25 3 0.03
28 29 0.27
29 7 0.06
30 25 0.23
31 42 0.39
33 3 0.03
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.26
Consensus pattern (31 bp):
TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
Found at i:136964 original size:89 final size:90
Alignment explanation
Indices: 136807--136986 Score: 231
Period size: 89 Copynumber: 2.0 Consensus size: 90
136797 TAAAAAAAAA
* *** *
136807 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACGAAATTGGACCCCAAAAAGTTTAATT
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACGAAATTGAACAAAAAAAAGTTTAAGT
* *
136872 ACCAACTTA-AAAAAAGTGTCAAGT
66 ACCAAATTATAAAAAAATGTCAAGT
* * *
136896 TTAGGTACCAAATTAGGAAAAAGTGTCAAGTT-TGAGTATC-AAATTGAACAAAAAAAAGTTTAG
1 TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAG-GTA-CGAAATTGAACAAAAAAAAGTTTAA
136959 GTACCAAATTATAAAAAAATGTCAAGT
64 GTACCAAATTATAAAAAAATGTCAAGT
136986 T
1 T
136987 CATATATCAA
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
88 1 0.01
89 61 0.78
90 16 0.21
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.26
Consensus pattern (90 bp):
TTAGGTACCAAATTAGGAAAAAGAGTCAAGTTCAGGTACGAAATTGAACAAAAAAAAGTTTAAGT
ACCAAATTATAAAAAAATGTCAAGT
Done.