Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011484.1 Kokia drynarioides strain JFW-HI SEQ_126468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 432696
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:7172 original size:35 final size:35
Alignment explanation
Indices: 7127--7198 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
7117 TCATAGTGTG
7127 ATATATATTAATCTTGAGTGAATGATGGATAATGT
1 ATATATATTAATCTTGAGTGAATGATGGATAATGT
7162 ATATATATTAATCTTGAGTGAATGATGGATAATGT
1 ATATATATTAATCTTGAGTGAATGATGGATAATGT
7197 AT
1 AT
7199 GCATGACTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.38, C:0.03, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTAATCTTGAGTGAATGATGGATAATGT
Found at i:11822 original size:20 final size:21
Alignment explanation
Indices: 11792--11849 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
11782 TTTTAAAATC
*
11792 AAGTTAAAATGATTTTAAACA
1 AAGTCAAAATGATTTTAAACA
* *
11813 AAG-CAAAATGA-TTTGAACC
1 AAGTCAAAATGATTTTAAACA
*
11832 AAGTCAAAATCATTTTAA
1 AAGTCAAAATGATTTTAA
11850 CACTTCAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 9 0.30
20 14 0.47
21 7 0.23
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.29
Consensus pattern (21 bp):
AAGTCAAAATGATTTTAAACA
Found at i:19480 original size:20 final size:20
Alignment explanation
Indices: 19448--19493 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
19438 GCATGGTTTA
*
19448 AATTAAGTATAAATA-GATTT
1 AATTAAGTATAAAAATGA-TT
19468 AATTAAG-ATTAAAAATGATT
1 AATTAAGTA-TAAAAATGATT
19488 AATTAA
1 AATTAA
19494 AGCTTAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 1 0.04
20 20 0.87
21 2 0.09
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (20 bp):
AATTAAGTATAAAAATGATT
Found at i:22073 original size:17 final size:18
Alignment explanation
Indices: 22050--22091 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
22040 TATAAGAAAG
22050 GAAATGCAACT-AC-AAT
1 GAAATGCAACTAACAAAT
22066 GCAAATGC-ACTAACAAAT
1 G-AAATGCAACTAACAAAT
22084 GAAATGCA
1 GAAATGCA
22092 GTGACAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.18
17 14 0.64
18 4 0.18
ACGTcount: A:0.50, C:0.19, G:0.14, T:0.17
Consensus pattern (18 bp):
GAAATGCAACTAACAAAT
Found at i:22270 original size:21 final size:21
Alignment explanation
Indices: 22231--22271 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22221 CTCGCCTTCC
*
22231 TCCTTGCGCTTCTTTTTCTTA
1 TCCTTGCGCTTCTTCTTCTTA
22252 TCCTTGCGCTT-TCTCTTCTT
1 TCCTTGCGCTTCT-TCTTCTT
22272 GTCATTCGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.02, C:0.32, G:0.10, T:0.56
Consensus pattern (21 bp):
TCCTTGCGCTTCTTCTTCTTA
Found at i:24022 original size:20 final size:20
Alignment explanation
Indices: 23997--24036 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
23987 TTTGGAAGGG
* *
23997 GTTTTTGTTCCTCTTGTTCT
1 GTTTTTATTCCTCCTGTTCT
24017 GTTTTTATTCCTCCTGTTCT
1 GTTTTTATTCCTCCTGTTCT
24037 TGGGTTTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.03, C:0.23, G:0.12, T:0.62
Consensus pattern (20 bp):
GTTTTTATTCCTCCTGTTCT
Found at i:24043 original size:23 final size:22
Alignment explanation
Indices: 23995--24043 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
23985 GTTTTGGAAG
* *
23995 GGGTTTTTGTTCCTCTTGTTCT
1 GGGTTTTTATTCCTCCTGTTCT
24017 --GTTTTTATTCCTCCTGTTCTT
1 GGGTTTTTATTCCTCCTGTTC-T
24038 GGGTTT
1 GGGTTT
24044 GGAAGACAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
20 17 0.77
21 1 0.05
23 4 0.18
ACGTcount: A:0.02, C:0.18, G:0.20, T:0.59
Consensus pattern (22 bp):
GGGTTTTTATTCCTCCTGTTCT
Found at i:48906 original size:53 final size:53
Alignment explanation
Indices: 48843--48949 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
48833 CATTGGGCCA
48843 CCTAAGCTTCAATCTGATAGGCTTCTCTAACAACTCTTTAAATCGAGTTAACT
1 CCTAAGCTTCAATCTGATAGGCTTCTCTAACAACTCTTTAAATCGAGTTAACT
48896 CCTAAGCTTCAATCTGATAGGCTTCTCTAACAACTCTTTAAATCGAGTTAACT
1 CCTAAGCTTCAATCTGATAGGCTTCTCTAACAACTCTTTAAATCGAGTTAACT
48949 C
1 C
48950 TCGTGAATCA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (53 bp):
CCTAAGCTTCAATCTGATAGGCTTCTCTAACAACTCTTTAAATCGAGTTAACT
Found at i:50419 original size:22 final size:22
Alignment explanation
Indices: 50393--50437 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
50383 GTGTTAATGC
50393 TATTTTCTATATTATATTTGTG
1 TATTTTCTATATTATATTTGTG
50415 TATTTTCTATATTATATTTGTG
1 TATTTTCTATATTATATTTGTG
50437 T
1 T
50438 TGTATATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.04, G:0.09, T:0.64
Consensus pattern (22 bp):
TATTTTCTATATTATATTTGTG
Found at i:53347 original size:26 final size:26
Alignment explanation
Indices: 53299--53348 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
53289 CTTTGGTTTG
* *
53299 TGCGAGCTAGATCCTCGAGCTCTCCT
1 TGCGAGCTAGATCCACGAACTCTCCT
53325 TGCGAGCTA-AGTCCACGAACTCTC
1 TGCGAGCTAGA-TCCACGAACTCTC
53349 TTTGTTGTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.20, C:0.34, G:0.22, T:0.24
Consensus pattern (26 bp):
TGCGAGCTAGATCCACGAACTCTCCT
Found at i:54112 original size:34 final size:36
Alignment explanation
Indices: 54050--54123 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 36
54040 TTCACCAATC
* **
54050 GAAAGTCACGTTGATTGCTATC-CTAAAAAA-AAAA
1 GAAAGCCACGTTGATTGCTATCAGAAAAAAAGAAAA
* *
54084 GAAAGCCATGTTGATTGCTCTCAGAAAAAAAGAAAA
1 GAAAGCCACGTTGATTGCTATCAGAAAAAAAGAAAA
54120 GAAA
1 GAAA
54124 AAGGGAAGAC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
34 19 0.58
35 6 0.18
36 8 0.24
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (36 bp):
GAAAGCCACGTTGATTGCTATCAGAAAAAAAGAAAA
Found at i:54166 original size:21 final size:22
Alignment explanation
Indices: 54140--54185 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
54130 AGACATATTG
54140 ATTAATTCCA-AAA-AAAAAGTC
1 ATTAATT-CAGAAAGAAAAAGTC
54161 ATTAATTCAGAAAGGAAAAAGTC
1 ATTAATTCAGAAA-GAAAAAGTC
54184 AT
1 AT
54186 GCAAATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 2 0.09
21 10 0.45
23 10 0.45
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.24
Consensus pattern (22 bp):
ATTAATTCAGAAAGAAAAAGTC
Found at i:63303 original size:13 final size:13
Alignment explanation
Indices: 63285--63309 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63275 CCTTATTTTT
63285 TCTTTTTTTTCTC
1 TCTTTTTTTTCTC
63298 TCTTTTTTTTCT
1 TCTTTTTTTTCT
63310 TTGGGCCACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TCTTTTTTTTCTC
Found at i:75402 original size:25 final size:25
Alignment explanation
Indices: 75374--75422 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
75364 ATGGAATTTA
75374 ATGTAGTTAT-TGCTATGGCAAAATG
1 ATGTA-TTATATGCTATGGCAAAATG
*
75399 ATGTATTCTATGCTATGGCAAAAT
1 ATGTATTATATGCTATGGCAAAAT
75423 AGAGATAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (25 bp):
ATGTATTATATGCTATGGCAAAATG
Found at i:78435 original size:21 final size:21
Alignment explanation
Indices: 78397--78436 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
78387 TCTTGAAAGG
* *
78397 ATCTAATTAAACTAAAAATTA
1 ATCTAAGTAAAATAAAAATTA
*
78418 ATCTAAGTAAAATTAAAAT
1 ATCTAAGTAAAATAAAAAT
78437 AAAAATTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (21 bp):
ATCTAAGTAAAATAAAAATTA
Found at i:82560 original size:26 final size:26
Alignment explanation
Indices: 82528--82580 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
82518 AAACTAGCAA
82528 GGTTATAGCAAACAATTTTTATCAAG
1 GGTTATAGCAAACAATTTTTATCAAG
82554 GGTTATAGCAAACAATTTTTATCAAG
1 GGTTATAGCAAACAATTTTTATCAAG
82580 G
1 G
82581 CAATGACCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (26 bp):
GGTTATAGCAAACAATTTTTATCAAG
Found at i:83354 original size:17 final size:17
Alignment explanation
Indices: 83315--83362 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
83305 TGATATATGG
* **
83315 AAATGCAATGAAAATGT
1 AAATGCAATGACAATAA
*
83332 AGATGCAATGACAATAA
1 AAATGCAATGACAATAA
83349 AAATGCAATGACAA
1 AAATGCAATGACAA
83363 AGGAAATGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.54, C:0.10, G:0.17, T:0.19
Consensus pattern (17 bp):
AAATGCAATGACAATAA
Found at i:83369 original size:17 final size:17
Alignment explanation
Indices: 83313--83370 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
83303 AATGATATAT
83313 GGAAATGCAATGA-AAA
1 GGAAATGCAATGACAAA
* *
83329 TGTAGATGCAATGACAATA
1 -GGAAATGCAATGACAA-A
*
83348 -AAAATGCAATGACAAA
1 GGAAATGCAATGACAAA
83364 GGAAATG
1 GGAAATG
83371 TGGTGACAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
16 1 0.03
17 29 0.88
18 2 0.06
19 1 0.03
ACGTcount: A:0.52, C:0.09, G:0.22, T:0.17
Consensus pattern (17 bp):
GGAAATGCAATGACAAA
Found at i:85976 original size:32 final size:32
Alignment explanation
Indices: 85940--86005 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
85930 TGCCAGCGCT
*
85940 TAGTCTTCCCCTTGTAGATTGCAGCATTTTCA
1 TAGTCTTCCCCTTGTAGATTGCAACATTTTCA
**
85972 TAGTCTTTTCCTTGTAGATTGCAACATTTTCA
1 TAGTCTTCCCCTTGTAGATTGCAACATTTTCA
86004 TA
1 TA
86006 AGCATTGAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (32 bp):
TAGTCTTCCCCTTGTAGATTGCAACATTTTCA
Found at i:102515 original size:21 final size:21
Alignment explanation
Indices: 102491--102530 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
102481 AGCATTTTTA
* *
102491 GCATTTTTTAACTTAGTGACT
1 GCATTTTCTAACTCAGTGACT
102512 GCATTTTCTAACTCAGTGA
1 GCATTTTCTAACTCAGTGA
102531 TGCTCGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.42
Consensus pattern (21 bp):
GCATTTTCTAACTCAGTGACT
Found at i:117243 original size:43 final size:43
Alignment explanation
Indices: 117182--117295 Score: 167
Period size: 43 Copynumber: 2.7 Consensus size: 43
117172 CAATCAATAG
* * *
117182 CATACTATCAATATTAGGAAACAATGTTCCACTTAAT-TGATCA
1 CATACTTTCAATATTAGGAAACAATGTTCCACTCAATCGGA-CA
*
117225 CATACTTTCAATATTAGGAAACAATGTTCCTCTCAATCGGACA
1 CATACTTTCAATATTAGGAAACAATGTTCCACTCAATCGGACA
*
117268 CATACTTTCAATATTAGAAAACAATGTT
1 CATACTTTCAATATTAGGAAACAATGTT
117296 TCAACTTTCA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 63 0.97
44 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (43 bp):
CATACTTTCAATATTAGGAAACAATGTTCCACTCAATCGGACA
Found at i:123149 original size:123 final size:123
Alignment explanation
Indices: 122914--123282 Score: 542
Period size: 123 Copynumber: 3.0 Consensus size: 123
122904 TTCTGCTATC
** * * *
122914 TTTCCTTTTATTTTAATATCTCATATTAAAATGGAAATATATATTTTTATAGAAAAATATGGAAG
1 TTTCCTTTTA-TAGAATATCTCATATTAAAATGGAAATAT-T-TCTTTAAAGAAATATATGGAAG
* *
122979 GTTTATTAAAACATTATATTCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCAA
63 GTTTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTTCATGTTTTTAATATTCAA
*
123040 TTTCCTTTTCTAGAATATCTCATATTAAAATGGAAATATTTCTTTAAAGAAATATATGGAAGGTT
1 TTTCCTTTTATAGAATATCTCATATTAAAATGGAAATATTTCTTTAAAGAAATATATGGAAGGTT
* *
123105 TATTAAAACATTACATCCTTTCCAAAAAGATATTAACTTTCATGTTTTTAATATTCAA
66 TATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTTCATGTTTTTAATATTCAA
* * * *
123163 TTTCCTTTTATATAATATCTAATATTAAAATGGAAATATTCCTTTAAAGAAATATATGAAAGGTT
1 TTTCCTTTTATAGAATATCTCATATTAAAATGGAAATATTTCTTTAAAGAAATATATGGAAGGTT
* * *
123228 TATTAAGACATTATATCATTTCCAAAAGGATATTAAC-TTCTATTTTTTTAATATT
66 TATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTTC-ATGTTTTTAATATT
123283 TAACAAAATC
Statistics
Matches: 222, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
122 3 0.01
123 182 0.82
124 1 0.00
125 27 0.12
126 9 0.04
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.43
Consensus pattern (123 bp):
TTTCCTTTTATAGAATATCTCATATTAAAATGGAAATATTTCTTTAAAGAAATATATGGAAGGTT
TATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTTCATGTTTTTAATATTCAA
Found at i:123411 original size:106 final size:108
Alignment explanation
Indices: 123220--123431 Score: 331
Period size: 106 Copynumber: 2.0 Consensus size: 108
123210 AGAAATATAT
* **
123220 GAAAGGTTTATTAAGACATTATATCATTTCCAAAAGGATATTAACTTCTATTTTTTTAATATTTA
1 GAAAGGTTTATTAAAACATTATATCATTTCCAAAAGGATATTAACTTCTATAGTTTTAATATTTA
123285 ACAAAATCATTATAATTAATAATTATAATTACGTTAAATTAAA
66 ACAAAATCATTATAATTAATAATTATAATTACGTTAAATTAAA
* * *
123328 GAAA-GTTTATTAAAACGTTATATCCTTTCCAAAGGGATATTAACTT-TCA-AGTTTTAATATTT
1 GAAAGGTTTATTAAAACATTATATCATTTCCAAAAGGATATTAACTTCT-ATAGTTTTAATATTT
*
123390 AACGAAATCATTATAATTAATAATTATAATTACGTTAAATTA
65 AACAAAATCATTATAATTAATAATTATAATTACGTTAAATTA
123432 TATTCAGTAA
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
106 53 0.55
107 39 0.41
108 4 0.04
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (108 bp):
GAAAGGTTTATTAAAACATTATATCATTTCCAAAAGGATATTAACTTCTATAGTTTTAATATTTA
ACAAAATCATTATAATTAATAATTATAATTACGTTAAATTAAA
Found at i:129073 original size:123 final size:122
Alignment explanation
Indices: 128758--129108 Score: 496
Period size: 118 Copynumber: 2.9 Consensus size: 122
128748 CTTTTTATTT
* *
128758 TAATTTCTCATATTAAAATGGAAATATATATCTTTAGAGAAATATATGGAAGGTTTATTAAAACA
1 TAATATCT-ATATTAAAATGGAAATAT-T-TCTTTAAAGAAATATATGGAAGGTTTATTAAAACA
* * * *
128823 TTATATCATTTCCAAAAGGATATTAACTTCCATGTTTTTAATATGCAATTTCCTTTTATA
63 TTATATCCTTTTCAAAAGGATATTAACTTCTATGTTTTTAATATTCAATTTCCTTTTATA
* * * *
128883 TAATATCT-CA-T--AATGGAAATATTTCTTTAAAGGAATATATGGAAGGTTTATTAAAATATAA
1 TAATATCTATATTAAAATGGAAATATTTCTTTAAAGAAATATATGGAAGGTTTATTAAAACATTA
* *
128944 TATCCTTTTCAAAAGGATATTAACTTTTATATTTTTAATATTCAATTTCCTTTTATA
66 TATCCTTTTCAAAAGGATATTAACTTCTATGTTTTTAATATTCAATTTCCTTTTATA
129001 TAATATCTAATATTAAAATGGAAATA-TTCTTTTAAAGAAATATATGGAAGGTTTATTAAAACAT
1 TAATATCT-ATATTAAAATGGAAATATTTC-TTTAAAGAAATATATGGAAGGTTTATTAAAACAT
* *
129065 TATATCCTTTTTAAAATGATATTAACTTCTATGTTTTTAATATT
64 TATATCCTTTTCAAAAGGATATTAACTTCTATGTTTTTAATATT
129109 TAATGAAATT
Statistics
Matches: 200, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
118 93 0.47
119 1 0.00
120 12 0.06
121 1 0.00
122 4 0.02
123 82 0.41
125 7 0.04
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.44
Consensus pattern (122 bp):
TAATATCTATATTAAAATGGAAATATTTCTTTAAAGAAATATATGGAAGGTTTATTAAAACATTA
TATCCTTTTCAAAAGGATATTAACTTCTATGTTTTTAATATTCAATTTCCTTTTATA
Found at i:129253 original size:106 final size:107
Alignment explanation
Indices: 129038--129258 Score: 320
Period size: 106 Copynumber: 2.1 Consensus size: 107
129028 TCTTTTAAAG
** * *
129038 AAATATATGGAAGGTTTATTAAAACATTATATCCTTTTTAAAATGATATTAACTTCTATGTTTTT
1 AAAT-TATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCTATGATTTT
* * *
129103 AATATTTAATGAAATTATTATAATTAATAATTATAATTAAGTT
65 AATAATTAACGAAATCATTATAATTAATAATTATAATTAAGTT
* *
129146 AAATTATGGAAGGTTTATTTAAACATTATATCCTTTCCAAAAGGATATTAA-TTTTCAT-ATTTT
1 AAATTATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCT-ATGATTTT
*
129209 AATAATTAACGAAATCATTATAATTAATAATTATAATTACGTT
65 AATAATTAACGAAATCATTATAATTAATAATTATAATTAAGTT
129252 AAATTAT
1 AAATTAT
129259 ATTCAATAAA
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
106 53 0.52
107 45 0.44
108 4 0.04
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.44
Consensus pattern (107 bp):
AAATTATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCTATGATTTTA
ATAATTAACGAAATCATTATAATTAATAATTATAATTAAGTT
Found at i:146992 original size:34 final size:35
Alignment explanation
Indices: 146954--147099 Score: 137
Period size: 34 Copynumber: 4.3 Consensus size: 35
146944 AAGTTAGGAG
146954 GAGAAGTTAGAGTCCATATAGAGAAAGTTAT-TAT
1 GAGAAGTTAGAGTCCATATAGAGAAAGTTATGTAT
* *
146988 GAGAAGTTATAGTCCATATAGAGAAAGTTATGT-G
1 GAGAAGTTAGAGTCCATATAGAGAAAGTTATGTAT
* * * *
147022 GAGAAGTTATAATCCATACAGAGAAAGCTA--TAT
1 GAGAAGTTAGAGTCCATATAGAGAAAGTTATGTAT
* *
147055 GAGGAAGTCTA-AGCCCATAT--TGAAAGTTATGTA-
1 GA-GAAGT-TAGAGTCCATATAGAGAAAGTTATGTAT
*
147088 GCGAAGTTAGAG
1 GAGAAGTTAGAG
147100 CATGTATACG
Statistics
Matches: 93, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
31 2 0.02
32 15 0.16
33 3 0.03
34 70 0.75
35 3 0.03
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.27
Consensus pattern (35 bp):
GAGAAGTTAGAGTCCATATAGAGAAAGTTATGTAT
Found at i:147062 original size:68 final size:66
Alignment explanation
Indices: 146942--147098 Score: 174
Period size: 68 Copynumber: 2.3 Consensus size: 66
146932 TGCATACAAG
* * * * * *
146942 GAAAGTTAGGAGGAGAAGTTAGAGTCCATATAGAGAAAGTTATTATGAGAAGT-TATAGTCCATA
1 GAAAGTTATGTGGAGAAGTTAGAATCCATACAGAGAAAGCTATTATGAGAAGTCTA-AGCCCATA
147006 TAGA
65 T--A
*
147010 GAAAGTTATGTGGAGAAGTTATAATCCATACAGAGAAAGCTA-TATGAGGAAGTCTAAGCCCATA
1 GAAAGTTATGTGGAGAAGTTAGAATCCATACAGAGAAAGCTATTATGA-GAAGTCTAAGCCCATA
*
147074 TT
65 TA
* *
147076 GAAAGTTATGTAGCGAAGTTAGA
1 GAAAGTTATGTGGAGAAGTTAGA
147099 GCATGTATAC
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
66 20 0.26
67 5 0.07
68 49 0.64
69 2 0.03
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.26
Consensus pattern (66 bp):
GAAAGTTATGTGGAGAAGTTAGAATCCATACAGAGAAAGCTATTATGAGAAGTCTAAGCCCATAT
A
Found at i:154823 original size:18 final size:18
Alignment explanation
Indices: 154800--154842 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
154790 GAATAGATTT
154800 TTAATTAAATAATTTT-AA
1 TTAATTAAA-AATTTTAAA
*
154818 TTAATTGAAAATTTTAAA
1 TTAATTAAAAATTTTAAA
154836 TTAATTA
1 TTAATTA
154843 CACATTGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
TTAATTAAAAATTTTAAA
Found at i:154903 original size:27 final size:27
Alignment explanation
Indices: 154861--154925 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
154851 ATTAGAAAAG
* *
154861 AAAAACTATTTGTTTCATTTTGATTGA
1 AAAAACTATTTGTTTCATTTTGACTAA
*
154888 AGAAACTATTCT-TTTCATTTTGACTAA
1 AAAAACTATT-TGTTTCATTTTGACTAA
154915 AAAAACTATTT
1 AAAAACTATTT
154926 TCATCCTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.03
27 31 0.94
28 1 0.03
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.45
Consensus pattern (27 bp):
AAAAACTATTTGTTTCATTTTGACTAA
Found at i:159216 original size:31 final size:31
Alignment explanation
Indices: 159178--159240 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
159168 CTTCCTCCAA
159178 AATTAAACAAACCCATAAATATTATATACAC
1 AATTAAACAAACCCATAAATATTATATACAC
159209 AATTAAACAAACCCATAAATATTATATACAC
1 AATTAAACAAACCCATAAATATTATATACAC
159240 A
1 A
159241 TGAATAACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (31 bp):
AATTAAACAAACCCATAAATATTATATACAC
Found at i:164246 original size:20 final size:21
Alignment explanation
Indices: 164201--164246 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
164191 CTACAAGGGT
* *
164201 CACACGGTCGTGTGGCTCTCC
1 CACACGGTCATGAGGCTCTCC
*
164222 CACACGGTCATGAGGC-CTTC
1 CACACGGTCATGAGGCTCTCC
164242 CACAC
1 CACAC
164247 ACTCGAGTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.17, C:0.39, G:0.24, T:0.20
Consensus pattern (21 bp):
CACACGGTCATGAGGCTCTCC
Found at i:167956 original size:14 final size:15
Alignment explanation
Indices: 167931--167961 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
167921 TGGACATTAA
167931 TTTATTTGGTTTTAT
1 TTTATTTGGTTTTAT
167946 TTTATTT-GTTTTAT
1 TTTATTTGGTTTTAT
167960 TT
1 TT
167962 CTAATTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.13, C:0.00, G:0.10, T:0.77
Consensus pattern (15 bp):
TTTATTTGGTTTTAT
Found at i:168212 original size:40 final size:40
Alignment explanation
Indices: 168091--168674 Score: 650
Period size: 40 Copynumber: 14.4 Consensus size: 40
168081 TCTCATCTTC
* * * * *
168091 TAAAAGATTGGATGGTGTCTTTAATTTGTCTTCTGATT-GAGG
1 TAAAAGATTGGAT-G-GTCTTCAATCTGCCCTCTGGTTAG-GG
* *
168133 TAAAAGATTAGATAGTGTCTTCAATCTTCCCTCTGGTTAGGG
1 TAAAAGATTGGAT-G-GTCTTCAATCTGCCCTCTGGTTAGGG
* * *
168175 TAAAAGATTGTATGGTCTTCAATTTGCTCC-CTAGTTAGGG
1 TAAAAGATTGGATGGTCTTCAATCTGC-CCTCTGGTTAGGG
* * * *
168215 TAAAAGATTAGATGGTCTTCAATTTGCCCTCTTGTTAAGG
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
* * ** *
168255 TAAAATATTGGATAGTCTTCAATCTGCCCTCTAATTGGGG
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
* * *
168295 TAAAAGATTGGATGGTGTCTTCAATCTACCCTTTGGTTGGGG
1 TAAAAGATTGGAT-G-GTCTTCAATCTGCCCTCTGGTTAGGG
* * *
168337 TAAAAGATTGGATGGTCTTCAATCTACCGTCTGGTTAGGC
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
* * *
168377 TAAAAGATTGGATGGTCTTCAATCTACCGTCTGGTTAGGC
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
*
168417 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAAGG
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
* *
168457 TAAAAGATTGGATGGTCTTCAATGTGCCCTTTGGTTAGGG
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
* * * *
168497 TAAAAAGATTAGAAGTGTCTTTAATCTGCCCTCTGGTTGGGG
1 T-AAAAGATTGGATG-GTCTTCAATCTGCCCTCTGGTTAGGG
* * *
168539 TAAAAGATTGGATAGTCCTCAATCTACCCTCTGGTTAGGG
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
* * *
168579 TAAAAGATTGGATGGTCTTCAATCTACTCTCTAGTTAGGG
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
* ** *
168619 TAAAAGATTGGATGGTCTTCAATTTGCCCTCTAATTAAGG
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
*
168659 TAAAAGATTAGATGGT
1 TAAAAGATTGGATGGT
168675 AGCTTCGCCT
Statistics
Matches: 470, Mismatches: 65, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
39 2 0.00
40 341 0.73
41 25 0.05
42 101 0.21
43 1 0.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (40 bp):
TAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAGGG
Found at i:168398 original size:162 final size:159
Alignment explanation
Indices: 168091--168674 Score: 630
Period size: 162 Copynumber: 3.6 Consensus size: 159
168081 TCTCATCTTC
* * * * * * *
168091 TAAAAGATTGGATGGTGTCTTTAATTTGTCTTCTGATTGAGGTAAAAGATTAGATAGTGTCTTCA
1 TAAAAGATTGGAT-G-GTCTTCAATCTGCCCTCTAATTAAGGTAAAAGATTGGAT-G-GTCTTCA
* * * * * *
168156 ATCTTCCCTCTGGTTAGGGTAAAAGATTGTATGGTCTTCAATTTGCTCCCTAGTTAGGGTAAAAG
62 ATCTACCCTTTGGTTAGGGTAAAAGATTGGATGGTCTTCAATCTGC-CTCTGGTTAGGGTAAAAG
* * * *
168221 ATTAGATGGTCTTCAATTTGCCCTCTTGTTAAGG
126 ATTGGATGGTCTTCAATCTACCCTCTGGTTAAGG
* * **
168255 TAAAATATTGGATAGTCTTCAATCTGCCCTCTAATTGGGGTAAAAGATTGGATGGTGTCTTCAAT
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTAATTAAGGTAAAAGATTGGAT-G-GTCTTCAAT
* * *
168320 CTACCCTTTGGTTGGGGTAAAAGATTGGATGGTCTTCAATCTACCGTCTGGTTAGGCTAAAAGAT
64 CTACCCTTTGGTTAGGGTAAAAGATTGGATGGTCTTCAATCTGCC-TCTGGTTAGGGTAAAAGAT
*
168385 TGGATGGTCTTCAATCTACCGTCTGGTT-AGG
128 TGGATGGTCTTCAATCTACCCTCTGGTTAAGG
** *
168416 CTAAAAGATTGGATGGTCTTCAATCTGCCCTCTGGTTAAGGTAAAAGATTGGATGGTCTTCAATG
1 -TAAAAGATTGGATGGTCTTCAATCTGCCCTCTAATTAAGGTAAAAGATTGGATGGTCTTCAATC
* * * * *
168481 TGCCCTTTGGTTAGGGTAAAAAGATTAGAAGTGTCTTTAATCTGCCCTCTGGTTGGGGTAAAAGA
65 TACCCTTTGGTTAGGGT-AAAAGATTGGATG-GTCTTCAATCTG-CCTCTGGTTAGGGTAAAAGA
* * *
168546 TTGGATAGTCCTCAATCTACCCTCTGGTTAGGG
127 TTGGATGGTCTTCAATCTACCCTCTGGTTAAGG
* * * * *
168579 TAAAAGATTGGATGGTCTTCAATCTACTCTCTAGTTAGGGTAAAAGATTGGATGGTCTTCAATTT
1 TAAAAGATTGGATGGTCTTCAATCTGCCCTCTAATTAAGGTAAAAGATTGGATGGTCTTCAATCT
* * ** * *
168644 GCCCTCTAATTAAGGTAAAAGATTAGATGGT
66 ACCCTTTGGTTAGGGTAAAAGATTGGATGGT
168675 AGCTTCGCCT
Statistics
Matches: 361, Mismatches: 53, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
160 26 0.07
161 28 0.08
162 291 0.81
163 4 0.01
164 12 0.03
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (159 bp):
TAAAAGATTGGATGGTCTTCAATCTGCCCTCTAATTAAGGTAAAAGATTGGATGGTCTTCAATCT
ACCCTTTGGTTAGGGTAAAAGATTGGATGGTCTTCAATCTGCCTCTGGTTAGGGTAAAAGATTGG
ATGGTCTTCAATCTACCCTCTGGTTAAGG
Found at i:168439 original size:202 final size:202
Alignment explanation
Indices: 168091--168667 Score: 782
Period size: 202 Copynumber: 2.8 Consensus size: 202
168081 TCTCATCTTC
*** * * *
168091 TAAAAGATTGGATGGTGTCTTTAAT-TTGTCTTCTGATTGAGGTAAAAGATTAGATAGTGTCTTC
1 TAAAAGATTGGATGGTGTCTTTAATCTACCCTT-TGGTTGGGGTAAAAGATTGGAT-G-GTCTTC
* * * * *
168155 AATCTTCCCTCTGGTTAGGGTAAAAGATTGTATGGTCTTCAATTTGCTCCCTAGTTAGGGTAAAA
63 AATCTACCCTCTGGTTAGGGTAAAAGATTGGATGGTCTTCAATCTACTCTCTAGTTAGGGTAAAA
* * *
168220 GATTAGATGGTCTTCAATTTGCCCTCTTGTTAAGGTAAAATATTGGATAGTCTTCAATCTGCCCT
128 GATTGGATGGTCTTCAATTTGCCCTCTAGTTAAGGTAAAAGATTGGATAGTCTTCAATCTGCCCT
*
168285 CTAATTGGGG
193 CTAATTAGGG
*
168295 TAAAAGATTGGATGGTGTCTTCAATCTACCCTTTGGTTGGGGTAAAAGATTGGATGGTCTTCAAT
1 TAAAAGATTGGATGGTGTCTTTAATCTACCCTTTGGTTGGGGTAAAAGATTGGATGGTCTTCAAT
* * * *
168360 CTACCGTCTGGTTAGGCTAAAAGATTGGATGGTCTTCAATCTAC-CGTCTGGTTAGGCTAAAAGA
66 CTACCCTCTGGTTAGGGTAAAAGATTGGATGGTCTTCAATCTACTC-TCTAGTTAGGGTAAAAGA
* * * * *
168424 TTGGATGGTCTTCAATCTGCCCTCTGGTTAAGGTAAAAGATTGGATGGTCTTCAATGTGCCCTTT
130 TTGGATGGTCTTCAATTTGCCCTCTAGTTAAGGTAAAAGATTGGATAGTCTTCAATCTGCCCTCT
**
168489 GGTTAGGG
195 AATTAGGG
* * * * * *
168497 TAAAAAGATTAGA-AGTGTCTTTAATCTGCCCTCTGGTTGGGGTAAAAGATTGGATAGTCCTCAA
1 T-AAAAGATTGGATGGTGTCTTTAATCTACCCTTTGGTTGGGGTAAAAGATTGGATGGTCTTCAA
168561 TCTACCCTCTGGTTAGGGTAAAAGATTGGATGGTCTTCAATCTACTCTCTAGTTAGGGTAAAAGA
65 TCTACCCTCTGGTTAGGGTAAAAGATTGGATGGTCTTCAATCTACTCTCTAGTTAGGGTAAAAGA
*
168626 TTGGATGGTCTTCAATTTGCCCTCTAATTAAGGTAAAAGATT
130 TTGGATGGTCTTCAATTTGCCCTCTAGTTAAGGTAAAAGATT
168668 AGATGGTAGC
Statistics
Matches: 329, Mismatches: 40, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
201 1 0.00
202 269 0.82
203 12 0.04
204 43 0.13
205 4 0.01
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (202 bp):
TAAAAGATTGGATGGTGTCTTTAATCTACCCTTTGGTTGGGGTAAAAGATTGGATGGTCTTCAAT
CTACCCTCTGGTTAGGGTAAAAGATTGGATGGTCTTCAATCTACTCTCTAGTTAGGGTAAAAGAT
TGGATGGTCTTCAATTTGCCCTCTAGTTAAGGTAAAAGATTGGATAGTCTTCAATCTGCCCTCTA
ATTAGGG
Found at i:170173 original size:20 final size:20
Alignment explanation
Indices: 170130--170173 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
170120 GTCATTTTTT
* *
170130 TTGCATTTTTAATTTAGTGA
1 TTGCATTTTTAACTCAGTGA
170150 TTGCATTTTCTAACTCAGTG-
1 TTGCATTTT-TAACTCAGTGA
170170 TTGC
1 TTGC
170174 TCGATTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.20, C:0.14, G:0.16, T:0.50
Consensus pattern (20 bp):
TTGCATTTTTAACTCAGTGA
Found at i:174379 original size:27 final size:28
Alignment explanation
Indices: 174323--174384 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
174313 GAGTATGAAT
* *
174323 GAATAGAACATTTTGTCAATTTGGAAAA
1 GAATAAAACATTTTGTCAAATTGGAAAA
*
174351 GAATAAAATATTTT-TCAAATT-GAACAA
1 GAATAAAACATTTTGTCAAATTGGAA-AA
174378 GAATAAA
1 GAATAAA
174385 TGAATTGAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 3 0.10
27 15 0.50
28 12 0.40
ACGTcount: A:0.50, C:0.06, G:0.13, T:0.31
Consensus pattern (28 bp):
GAATAAAACATTTTGTCAAATTGGAAAA
Found at i:188246 original size:17 final size:15
Alignment explanation
Indices: 188224--188275 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 15
188214 TACAGCAATA
188224 TTTTCTTTCTTTTCTCT
1 TTTTCTTTC-TTTCT-T
188241 TTTTCTCTTCTTTCTT
1 TTTTCT-TTCTTTCTT
* *
188257 TTTT-TTTCATTCAT
1 TTTTCTTTCTTTCTT
188271 TTTTC
1 TTTTC
188276 ATGTGATTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
14 11 0.35
15 1 0.03
16 5 0.16
17 11 0.35
18 3 0.10
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTCTTTCTTTCTT
Found at i:188933 original size:20 final size:20
Alignment explanation
Indices: 188910--189033 Score: 122
Period size: 20 Copynumber: 6.2 Consensus size: 20
188900 ACAAGCCACA
*
188910 AGTAATGCAGATAAACTACC
1 AGTAATGCAGATAAACTGCC
* * ** *
188930 AGTAATGCAAACAAGTTGCT
1 AGTAATGCAGATAAACTGCC
*
188950 AGTAATGCAGATAGACTGCC
1 AGTAATGCAGATAAACTGCC
* *
188970 AGTAATGCAGACAAACTACC
1 AGTAATGCAGATAAACTGCC
* * * *
188990 AGTATTGCAAATGAACTCCC
1 AGTAATGCAGATAAACTGCC
*
189010 AGTAATGTAGATAAACTGCC
1 AGTAATGCAGATAAACTGCC
189030 AGTA
1 AGTA
189034 CTTCCTTCTT
Statistics
Matches: 79, Mismatches: 25, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 79 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (20 bp):
AGTAATGCAGATAAACTGCC
Found at i:188934 original size:40 final size:40
Alignment explanation
Indices: 188890--189016 Score: 119
Period size: 40 Copynumber: 3.2 Consensus size: 40
188880 ACAAGTTGCT
** *
188890 AGTAATGTGGACAAGCCACAAGTAATGCAGATAAACTACC
1 AGTAATGCAGACAAGCTACAAGTAATGCAGATAAACTACC
* * * * * *
188930 AGTAATGCAAACAAGTTGCTAGTAATGCAGATAGACTGCC
1 AGTAATGCAGACAAGCTACAAGTAATGCAGATAAACTACC
* * * * * *
188970 AGTAATGCAGACAAACTACCAGTATTGCAAATGAACTCCC
1 AGTAATGCAGACAAGCTACAAGTAATGCAGATAAACTACC
189010 AGTAATG
1 AGTAATG
189017 TAGATAAACT
Statistics
Matches: 68, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (40 bp):
AGTAATGCAGACAAGCTACAAGTAATGCAGATAAACTACC
Found at i:189014 original size:60 final size:60
Alignment explanation
Indices: 188910--189033 Score: 160
Period size: 60 Copynumber: 2.1 Consensus size: 60
188900 ACAAGCCACA
* * * * *
188910 AGTAATGCAGATAAACTACCAGTAATGCAAACAAGTTGCTAGTAATGCAGATAGACTGCC
1 AGTAATGCAGACAAACTACCAGTAATGCAAACAAGCTCCCAGTAATGCAGATAAACTGCC
* * *
188970 AGTAATGCAGACAAACTACCAGTATTGCAAATGAA-CTCCCAGTAATGTAGATAAACTGCC
1 AGTAATGCAGACAAACTACCAGTAATGCAAA-CAAGCTCCCAGTAATGCAGATAAACTGCC
189030 AGTA
1 AGTA
189034 CTTCCTTCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 53 0.96
61 2 0.04
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (60 bp):
AGTAATGCAGACAAACTACCAGTAATGCAAACAAGCTCCCAGTAATGCAGATAAACTGCC
Found at i:191236 original size:3 final size:3
Alignment explanation
Indices: 191222--191279 Score: 89
Period size: 3 Copynumber: 19.0 Consensus size: 3
191212 AAATCCTAAA
*
191222 AAT AATT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
191268 GAT AAT AAT AAT
1 AAT AAT AAT AAT
191280 TTGGGCCCTT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
3 47 0.94
4 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:196118 original size:107 final size:109
Alignment explanation
Indices: 195963--196175 Score: 299
Period size: 107 Copynumber: 2.0 Consensus size: 109
195953 AATCAATGCA
* * * *
195963 ATGTTCTTTTATTTTAGGGAATTCGAGAAATTATGCCCTAACATACTGGGTATGGCTTTTCTTTG
1 ATGTTATTTTATTTTAGGGAACTCGAGAAATTATGCCCTAACATACTGGGTATGACTTTTCTTTA
*
196028 AACCTAAATAATT-AAGTA-TCCTATTTAAAATAAATAAATGTTCG
66 AACCTAAATAATTGAA-CACT-CTATTTAAAATAAATAAATGTTCG
* *
196072 ATGTTATTTTA-TTTAGGGAACTCGAG-AATTGTGCCCTAACATACTGGGTATGATTTTTCTTTA
1 ATGTTATTTTATTTTAGGGAACTCGAGAAATTATGCCCTAACATACTGGGTATGACTTTTCTTTA
* *
196135 AACCTAAGTAATTGAACACTCTATTTAAAATCAATAAATGT
66 AACCTAAATAATTGAACACTCTATTTAAAATAAATAAATGT
196176 CCTTTGTTTT
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
107 66 0.71
108 17 0.18
109 10 0.11
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (109 bp):
ATGTTATTTTATTTTAGGGAACTCGAGAAATTATGCCCTAACATACTGGGTATGACTTTTCTTTA
AACCTAAATAATTGAACACTCTATTTAAAATAAATAAATGTTCG
Found at i:202465 original size:19 final size:19
Alignment explanation
Indices: 202441--202478 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
202431 TTAGGTGAGA
202441 ATGAACCCAAAATTGGTAT
1 ATGAACCCAAAATTGGTAT
202460 ATGAACCCAAAATTGGTAT
1 ATGAACCCAAAATTGGTAT
202479 TGACCATCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (19 bp):
ATGAACCCAAAATTGGTAT
Found at i:218022 original size:15 final size:14
Alignment explanation
Indices: 218001--218090 Score: 83
Period size: 15 Copynumber: 6.1 Consensus size: 14
217991 TTAGTATCCA
218001 TAGTTTTCAAAGTC
1 TAGTTTTCAAAGTC
* *
218015 TAGATTTTCACAGTA
1 TAG-TTTTCAAAGTC
218030 TAGTTTTCAAAGTC
1 TAGTTTTCAAAGTC
* *
218044 TAGGTTTTCACAGTA
1 TA-GTTTTCAAAGTC
*
218059 TAGTTTTCAGAA-CC
1 TAGTTTTCA-AAGTC
218073 TAGTGTTTTCAAAGTC
1 TA--GTTTTCAAAGTC
218089 TA
1 TA
218091 AAGTCTCATA
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
14 23 0.38
15 27 0.45
16 10 0.17
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (14 bp):
TAGTTTTCAAAGTC
Found at i:218075 original size:29 final size:29
Alignment explanation
Indices: 218000--218067 Score: 127
Period size: 29 Copynumber: 2.3 Consensus size: 29
217990 TTTAGTATCC
*
218000 ATAGTTTTCAAAGTCTAGATTTTCACAGT
1 ATAGTTTTCAAAGTCTAGGTTTTCACAGT
218029 ATAGTTTTCAAAGTCTAGGTTTTCACAGT
1 ATAGTTTTCAAAGTCTAGGTTTTCACAGT
218058 ATAGTTTTCA
1 ATAGTTTTCA
218068 GAACCTAGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (29 bp):
ATAGTTTTCAAAGTCTAGGTTTTCACAGT
Found at i:219597 original size:46 final size:46
Alignment explanation
Indices: 219485--219598 Score: 138
Period size: 46 Copynumber: 2.5 Consensus size: 46
219475 TTTCAGTAGG
* * * * * * *
219485 CATGCTTTACATGGGAATCACATCTCATTACAGTTTAACATAGTGG
1 CATGCTTAACATGTGAATCATATCTAATTACAGTTTAACACAATGA
** *
219531 CATGCTTAACATGTGAATCATATCTAATTATGGTTTATCACAATGA
1 CATGCTTAACATGTGAATCATATCTAATTACAGTTTAACACAATGA
219577 CATGCTTAACATGTGAATCATA
1 CATGCTTAACATGTGAATCATA
219599 ATCAGAATCA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (46 bp):
CATGCTTAACATGTGAATCATATCTAATTACAGTTTAACACAATGA
Found at i:221642 original size:53 final size:54
Alignment explanation
Indices: 221502--221642 Score: 144
Period size: 54 Copynumber: 2.6 Consensus size: 54
221492 CTAGTAAAAT
* * * *
221502 GGTGTC-AGCCATCAGTGCCCCAACACTCCTAATTTTTTTTTTAAAATCTGGTACTA
1 GGTGTCGA-CCATCAATGTCCCAACACTCC-AA-ATTTTTTTTAAAATATGGTACTA
* * *
221558 GGTGTCGACCATCAATGTCCCAGCACCCCAAATTTTTTTT-AAATATGGTATTAA
1 GGTGTCGACCATCAATGTCCCAACACTCCAAATTTTTTTTAAAATATGGTACT-A
* *
221612 GGTGTTGGCCATCAATGT-CCAACACTCCAAA
1 GGTGTCGACCATCAATGTCCCAACACTCCAAA
221643 AAAAATTTTG
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
53 21 0.29
54 25 0.35
55 2 0.03
56 23 0.32
57 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (54 bp):
GGTGTCGACCATCAATGTCCCAACACTCCAAATTTTTTTTAAAATATGGTACTA
Found at i:233520 original size:13 final size:13
Alignment explanation
Indices: 233502--233527 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
233492 ATTTATGAAC
233502 ATTATTATATTTT
1 ATTATTATATTTT
233515 ATTATTATATTTT
1 ATTATTATATTTT
233528 TTAATTCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTATTATATTTT
Found at i:233946 original size:16 final size:15
Alignment explanation
Indices: 233927--233957 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
233917 AGTTTCTTAG
233927 CTTTTCTAATTCTTTT
1 CTTTTCT-ATTCTTTT
233943 CTTTTCTATTCTTTT
1 CTTTTCTATTCTTTT
233958 GTCGAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (15 bp):
CTTTTCTATTCTTTT
Found at i:234699 original size:95 final size:95
Alignment explanation
Indices: 234561--234779 Score: 375
Period size: 95 Copynumber: 2.3 Consensus size: 95
234551 ATTAAATTAT
* * * *
234561 TTGAATTAACATAGAGATATGTTTTAAGAAATTATTTTAATTTCATGAGTATGTATGTGCATTAA
1 TTGAATTGACATACAGATATG-GTCAAGAAATTATTTTAATTTCATGAGTATGTATGTGCATTAA
234626 CACATTTACTTAATAAAATTGGTTTAGTCGA
65 CACATTTACTTAATAAAATTGGTTTAGTCGA
234657 TTGAATTGACATACAGATATGGTCAAGAAATTATTTTAATTTCATGAGTATGTATGTGCATTAAC
1 TTGAATTGACATACAGATATGGTCAAGAAATTATTTTAATTTCATGAGTATGTATGTGCATTAAC
*
234722 ACATTTATTTAATAAAATTGGTTTAGTCGA
66 ACATTTACTTAATAAAATTGGTTTAGTCGA
*
234752 TTGAATTGACATACATATATGGTCAAGA
1 TTGAATTGACATACAGATATGGTCAAGA
234780 GATGAATGAA
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
95 98 0.84
96 19 0.16
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.40
Consensus pattern (95 bp):
TTGAATTGACATACAGATATGGTCAAGAAATTATTTTAATTTCATGAGTATGTATGTGCATTAAC
ACATTTACTTAATAAAATTGGTTTAGTCGA
Found at i:234981 original size:6 final size:7
Alignment explanation
Indices: 234952--234980 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
234942 TGTATTGAAA
234952 TTATTTT
1 TTATTTT
234959 TTATTTT
1 TTATTTT
234966 TTATTTT
1 TTATTTT
234973 TTATTTT
1 TTATTTT
234980 T
1 T
234981 AACTTATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTATTTT
Found at i:236624 original size:6 final size:6
Alignment explanation
Indices: 236615--236646 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
236605 TCTCAGTTTT
*
236615 AATCTT AATCTC AATCTC AATCTC AATCTC AA
1 AATCTC AATCTC AATCTC AATCTC AATCTC AA
236647 GATATCATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (6 bp):
AATCTC
Found at i:237333 original size:23 final size:23
Alignment explanation
Indices: 237302--237364 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
237292 AAGTCAACGA
* *
237302 TCAACGGTTCGGTTTGGTCAAAG
1 TCAACGGTTCGGTTCGATCAAAG
* * *
237325 TCAATGGTTTGATTCGATCAAAG
1 TCAACGGTTCGGTTCGATCAAAG
237348 TCAACGGTTCGGTTCGA
1 TCAACGGTTCGGTTCGA
237365 ATCGATCAAC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (23 bp):
TCAACGGTTCGGTTCGATCAAAG
Found at i:237381 original size:22 final size:22
Alignment explanation
Indices: 237348--237433 Score: 84
Period size: 22 Copynumber: 3.9 Consensus size: 22
237338 TCGATCAAAG
*
237348 TCAACGGTTCGGTTCGAATCGA
1 TCAACGGGTCGGTTCGAATCGA
* * * *
237370 TCAACGAGTCGGTTTGGATCGG
1 TCAACGGGTCGGTTCGAATCGA
* * *
237392 TCAATGGGTCGGGTCGGATCGA
1 TCAACGGGTCGGTTCGAATCGA
237414 TCAACGGGTCAGGTTC-AATC
1 TCAACGGGTC-GGTTCGAATC
237434 AAACTGAATT
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
22 46 0.92
23 4 0.08
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.26
Consensus pattern (22 bp):
TCAACGGGTCGGTTCGAATCGA
Found at i:239119 original size:12 final size:13
Alignment explanation
Indices: 239102--239136 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
239092 TAAAGAACAT
239102 AAAATAAAAGT-G
1 AAAATAAAAGTAG
*
239114 AAAATAAAAATAG
1 AAAATAAAAGTAG
239127 AAAATAAAAG
1 AAAATAAAAG
239137 CAAGATCTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.14
Consensus pattern (13 bp):
AAAATAAAAGTAG
Found at i:241966 original size:18 final size:18
Alignment explanation
Indices: 241925--241967 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
241915 ATAAACATAT
241925 TTTTTTTCTTTTCTTTTC
1 TTTTTTTCTTTTCTTTTC
**
241943 CCTTTTTC-TTTCTTTTTC
1 TTTTTTTCTTTTC-TTTTC
241961 TTTTTTT
1 TTTTTTT
241968 TTATTCGACT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTTTCTTTTCTTTTC
Found at i:243047 original size:24 final size:24
Alignment explanation
Indices: 243016--243074 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
243006 CGACAAAATT
* *
243016 TTCTTCCTTCT-CTCCTTTTTTTCC
1 TTCTTCCTTCTCCTCCTTCTTCT-C
*
243040 TTCTTCCTTTTCCTCCTTCTTCTC
1 TTCTTCCTTCTCCTCCTTCTTCTC
*
243064 TTCTTCTTTCT
1 TTCTTCCTTCT
243075 TTTCCTCAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 20 0.69
25 9 0.31
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (24 bp):
TTCTTCCTTCTCCTCCTTCTTCTC
Found at i:243049 original size:16 final size:16
Alignment explanation
Indices: 243014--243080 Score: 73
Period size: 16 Copynumber: 4.1 Consensus size: 16
243004 CGCGACAAAA
243014 TTTTCTTCCTTCTCTCC
1 TTTTCTTCCTTCT-TCC
*
243031 TTTTTTTCCTTCTTCC
1 TTTTCTTCCTTCTTCC
*
243047 TTTTCCTCCTTCTTCTC
1 TTTTCTTCCTTCTTC-C
*
243064 TTCTTCTTTCTT-TTCC
1 TT-TTCTTCCTTCTTCC
243080 T
1 T
243081 CAACACCCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
16 18 0.42
17 18 0.42
18 7 0.16
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTCTTCCTTCTTCC
Found at i:245924 original size:18 final size:18
Alignment explanation
Indices: 245901--245935 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
245891 TTAAAGAACA
245901 AAAAATA-AAAGATAAAAT
1 AAAAATAGAAA-ATAAAAT
245919 AAAAATAGAAAATAAAA
1 AAAAATAGAAAATAAAA
245936 GCAAGAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (18 bp):
AAAAATAGAAAATAAAAT
Found at i:251262 original size:13 final size:13
Alignment explanation
Indices: 251244--251273 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
251234 AGTCGACCCG
251244 ACCCAACTGCGTA
1 ACCCAACTGCGTA
251257 ACCCAACTGCGTA
1 ACCCAACTGCGTA
251270 ACCC
1 ACCC
251274 CTATATATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.43, G:0.13, T:0.13
Consensus pattern (13 bp):
ACCCAACTGCGTA
Found at i:274962 original size:34 final size:34
Alignment explanation
Indices: 274924--275025 Score: 93
Period size: 33 Copynumber: 3.1 Consensus size: 34
274914 AGATTTTGTA
274924 ACAGCATTGTAGATCAATTCAAAAATTTTAGTGT
1 ACAGCATTGTAGATCAATTCAAAAATTTTAGTGT
*** ** ** * *
274958 ACAGCAACCTTTAT-AATTGGAAGATTTT-GT-A
1 ACAGCATTGTAGATCAATTCAAAAATTTTAGTGT
*
274989 ACAGCATTGTAGATCAATTCAGAAATTTTAGTGT
1 ACAGCATTGTAGATCAATTCAAAAATTTTAGTGT
275023 ACA
1 ACA
275026 AATTTCAATC
Statistics
Matches: 46, Mismatches: 19, Indels: 6
0.65 0.27 0.08
Matches are distributed among these distances:
31 9 0.20
32 12 0.26
33 13 0.28
34 12 0.26
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (34 bp):
ACAGCATTGTAGATCAATTCAAAAATTTTAGTGT
Found at i:274968 original size:65 final size:65
Alignment explanation
Indices: 274895--275025 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
274885 TTCAGTTCTT
274895 AGCAACCTTTATAATTGGAAGATTTTGTAACAGCATTGTAGATCAATTCAAAAATTTTAGTGTAC
1 AGCAACCTTTATAATTGGAAGATTTTGTAACAGCATTGTAGATCAATTCAAAAATTTTAGTGTAC
*
274960 AGCAACCTTTATAATTGGAAGATTTTGTAACAGCATTGTAGATCAATTCAGAAATTTTAGTGTAC
1 AGCAACCTTTATAATTGGAAGATTTTGTAACAGCATTGTAGATCAATTCAAAAATTTTAGTGTAC
275025 A
1 A
275026 AATTTCAATC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (65 bp):
AGCAACCTTTATAATTGGAAGATTTTGTAACAGCATTGTAGATCAATTCAAAAATTTTAGTGTAC
Found at i:274994 original size:31 final size:31
Alignment explanation
Indices: 274895--274994 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
274885 TTCAGTTCTT
274895 AGCAACCTTTATAATTGGAAGATTTTGTAAC
1 AGCAACCTTTATAATTGGAAGATTTTGTAAC
*** ** ** * *
274926 AGCATTGTAGATCAATTCAAAAATTTTAGTGTAC
1 AGCAACCTTTAT-AATTGGAAGATTTT-GT-AAC
274960 AGCAACCTTTATAATTGGAAGATTTTGTAAC
1 AGCAACCTTTATAATTGGAAGATTTTGTAAC
274991 AGCA
1 AGCA
274995 TTGTAGATCA
Statistics
Matches: 48, Mismatches: 18, Indels: 6
0.67 0.25 0.08
Matches are distributed among these distances:
31 13 0.27
32 13 0.27
33 13 0.27
34 9 0.19
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (31 bp):
AGCAACCTTTATAATTGGAAGATTTTGTAAC
Found at i:289022 original size:10 final size:10
Alignment explanation
Indices: 289007--289031 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
288997 ATGAATTGGA
289007 TGAATGTGAT
1 TGAATGTGAT
289017 TGAATGTGAT
1 TGAATGTGAT
289027 TGAAT
1 TGAAT
289032 TTTATATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (10 bp):
TGAATGTGAT
Found at i:289384 original size:17 final size:17
Alignment explanation
Indices: 289362--289394 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
289352 AATCACATAA
289362 AAAAAGAGAAAAGAAAG
1 AAAAAGAGAAAAGAAAG
*
289379 AAAAAGATAAAAGAAA
1 AAAAAGAGAAAAGAAA
289395 TATATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAAGAGAAAAGAAAG
Found at i:305430 original size:29 final size:29
Alignment explanation
Indices: 305388--305445 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
305378 AATTTGATAT
305388 GTCCTAATTTGATTTGTGCATTATGTTTA
1 GTCCTAATTTGATTTGTGCATTATGTTTA
*
305417 GTCCTAATTTGATTTGTGCGTTATGTTTA
1 GTCCTAATTTGATTTGTGCATTATGTTTA
305446 CAAGCAGGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.52
Consensus pattern (29 bp):
GTCCTAATTTGATTTGTGCATTATGTTTA
Found at i:344761 original size:100 final size:99
Alignment explanation
Indices: 344643--344825 Score: 314
Period size: 100 Copynumber: 1.8 Consensus size: 99
344633 TCAGATATAA
* *
344643 TTTTTTTATTTTGGGACACTGATGGTCGACATCAACTTTATCAAATTTAAAA-AATATATATATT
1 TTTTTTTATTTTGAGACACTGATGGTCGACACCAACTTTATCAAATTTAAAATAAT-TAT-TATT
344707 TTATTTTGGGACACTGATGGTCGGTACGAATTAAAT
64 TTATTTTGGGACACTGATGGTCGGTACGAATTAAAT
*
344743 TTTTTTTATTTTGAGACACTGATGGTCGACACCAACTTTATCAAATTTAAAATAATTATTTTTTT
1 TTTTTTTATTTTGAGACACTGATGGTCGACACCAACTTTATCAAATTTAAAATAATTATTATTTT
344808 ATTTTGGGACACTGATGG
66 ATTTTGGGACACTGATGG
344826 CCAGCACCAA
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
99 23 0.29
100 53 0.67
101 3 0.04
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (99 bp):
TTTTTTTATTTTGAGACACTGATGGTCGACACCAACTTTATCAAATTTAAAATAATTATTATTTT
ATTTTGGGACACTGATGGTCGGTACGAATTAAAT
Found at i:344805 original size:58 final size:59
Alignment explanation
Indices: 344743--344887 Score: 188
Period size: 58 Copynumber: 2.5 Consensus size: 59
344733 CGAATTAAAT
* *
344743 TTTTTTTATTTTGAGACACTGATGGTCGA-CACCAACTTTATCAAAT-TTAAAATAATTA
1 TTTTTTTATTTTGGGACACTGATGGTCGAGCACCAACTTTATCAAATATAAAAAT-ATTA
* * *
344801 TTTTTTTATTTTGGGACACTGATGG-CCAGCACCAACTTTATCAGATATAAAAATGTTA
1 TTTTTTTATTTTGGGACACTGATGGTCGAGCACCAACTTTATCAAATATAAAAATATTA
* *
344859 TTTTTTTGGTTTTGGGACACTGACGGTCG
1 TTTTTTT-ATTTTGGGACACTGATGGTCG
344888 GCTAACCGCC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
57 2 0.03
58 50 0.67
59 22 0.29
60 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (59 bp):
TTTTTTTATTTTGGGACACTGATGGTCGAGCACCAACTTTATCAAATATAAAAATATTA
Found at i:346027 original size:69 final size:69
Alignment explanation
Indices: 345948--346087 Score: 201
Period size: 69 Copynumber: 2.0 Consensus size: 69
345938 CTATGTCACG
* * * *
345948 ACGTAAAAGACATTCTACTCCTTAGTGTGTTTTCCAGGTGTTGTCGCGACATA-TAGAAGCCGTG
1 ACGTAAAAGACAATCTACTCCTTAGTGTGTTTTCCAGGCGTTGTCGCGACACACAAG-AGCCGTG
346012 TCGCA
65 TCGCA
* * *
346017 ACGTAGAAGACAATCTACTCCTTAGTGTGTTTTCCATGCGTTGTTGCGACACACAAGAGCCGTGT
1 ACGTAAAAGACAATCTACTCCTTAGTGTGTTTTCCAGGCGTTGTCGCGACACACAAGAGCCGTGT
346082 CGCA
66 CGCA
346086 AC
1 AC
346088 ATAGTGTACT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
69 61 0.97
70 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (69 bp):
ACGTAAAAGACAATCTACTCCTTAGTGTGTTTTCCAGGCGTTGTCGCGACACACAAGAGCCGTGT
CGCA
Found at i:348387 original size:22 final size:23
Alignment explanation
Indices: 348349--348404 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 23
348339 TAGTTACTAA
*
348349 CAAAATATATTAATAAT-CCAAAAT
1 CAAAATA-A-TAATAATAACAAAAT
*
348373 CAAAATAATAATAATAATAAAAT
1 CAAAATAATAATAATAACAAAAT
348396 -AAAATAATA
1 CAAAATAATA
348405 TAAATTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 16 0.55
23 6 0.21
24 7 0.24
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
CAAAATAATAATAATAACAAAAT
Found at i:355454 original size:3 final size:3
Alignment explanation
Indices: 355448--355480 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
355438 AATAATCCAA
355448 AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
355481 TAAATTTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:355485 original size:9 final size:8
Alignment explanation
Indices: 355424--355485 Score: 54
Period size: 9 Copynumber: 7.1 Consensus size: 8
355414 GAATAGTTAC
355424 TAATAAAA
1 TAATAAAA
*
355432 T-ATATTAA
1 TAATA-AAA
355440 TAATCCAAAA
1 TAAT--AAAA
355450 TAATAATAA
1 TAATAA-AA
355459 TAATAATAA
1 TAATAA-AA
355468 TAATAAAA
1 TAATAAAA
355476 TAATATAAA
1 TAATA-AAA
355485 T
1 T
355486 TTGTAACTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
7 3 0.07
8 13 0.28
9 23 0.50
10 6 0.13
11 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (8 bp):
TAATAAAA
Found at i:356555 original size:20 final size:20
Alignment explanation
Indices: 356530--356591 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
356520 GTCTTTCGAA
*
356530 AAAAGTCAATGGTCAAAGTC
1 AAAAGTCAACGGTCAAAGTC
*
356550 AAAAGTCAACAGTCAAAGTC
1 AAAAGTCAACGGTCAAAGTC
*
356570 AATAA-TCAACGGTCAAGGTC
1 AA-AAGTCAACGGTCAAAGTC
356590 AA
1 AA
356592 CGGTTAACGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
20 35 0.95
21 2 0.05
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (20 bp):
AAAAGTCAACGGTCAAAGTC
Found at i:356626 original size:16 final size:15
Alignment explanation
Indices: 356600--356629 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
356590 AACGGTTAAC
356600 GGTTTGACTTGGTTT
1 GGTTTGACTTGGTTT
356615 GGTTTGGACTTGGTT
1 GGTTT-GACTTGGTT
356630 CAATTGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.07, C:0.07, G:0.37, T:0.50
Consensus pattern (15 bp):
GGTTTGACTTGGTTT
Found at i:363121 original size:29 final size:29
Alignment explanation
Indices: 363087--363165 Score: 97
Period size: 28 Copynumber: 2.7 Consensus size: 29
363077 ACTCATCTCG
*
363087 TCAAATTTATTTTTTCAGAACTCA-TCAA
1 TCAAAATTATTTTTTCAGAACTCATTCAA
* ***
363115 TCAAAATTATATTTTCAGAACTCATTTTG
1 TCAAAATTATTTTTTCAGAACTCATTCAA
363144 TCAAAATTATTTTTTCCAGAAC
1 TCAAAATTATTTTTT-CAGAAC
363166 CATAATAATC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 22 0.51
29 15 0.35
30 6 0.14
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.43
Consensus pattern (29 bp):
TCAAAATTATTTTTTCAGAACTCATTCAA
Found at i:363157 original size:28 final size:28
Alignment explanation
Indices: 363076--363157 Score: 85
Period size: 28 Copynumber: 2.9 Consensus size: 28
363066 TACAAAACAA
* * *
363076 AACTCATCTCGTCAAATTTATTTTTTCAG
1 AACTCATTTAGTCAAAATTA-TTTTTCAG
* *
363105 AACTCA-TCAATCAAAATTATATTTTCAG
1 AACTCATTTAGTCAAAATTAT-TTTTCAG
*
363133 AACTCATTTTGTCAAAATTATTTTT
1 AACTCATTTAGTCAAAATTATTTTT
363158 TCCAGAACCA
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
27 1 0.02
28 25 0.58
29 17 0.40
ACGTcount: A:0.34, C:0.17, G:0.05, T:0.44
Consensus pattern (28 bp):
AACTCATTTAGTCAAAATTATTTTTCAG
Found at i:369868 original size:18 final size:18
Alignment explanation
Indices: 369835--369892 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
369825 TCACACAATA
**
369835 ACATAAGTTCATATAAAT
1 ACATAAGTTCGCATAAAT
369853 ACATAAGTTCGCATAACA-
1 ACATAAGTTCGCATAA-AT
* * *
369871 ATATAGGTTTGCATAAAT
1 ACATAAGTTCGCATAAAT
369889 ACAT
1 ACAT
369893 GGGCTTCACA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (18 bp):
ACATAAGTTCGCATAAAT
Found at i:374683 original size:62 final size:62
Alignment explanation
Indices: 374607--374733 Score: 227
Period size: 62 Copynumber: 2.0 Consensus size: 62
374597 AACTATGCCT
374607 AAATATGTCACCGCATGAATACTTCCAGATTGCAACAAGGACTTTACGCTGCTAACATATCC
1 AAATATGTCACCGCATGAATACTTCCAGATTGCAACAAGGACTTTACGCTGCTAACATATCC
* * *
374669 AAATATGTCACCGCATGAATACTTTCAGATTGTAACAGGGACTTTACGCTGCTAACATATCC
1 AAATATGTCACCGCATGAATACTTCCAGATTGCAACAAGGACTTTACGCTGCTAACATATCC
374731 AAA
1 AAA
374734 ATCACCAATG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (62 bp):
AAATATGTCACCGCATGAATACTTCCAGATTGCAACAAGGACTTTACGCTGCTAACATATCC
Found at i:383795 original size:123 final size:123
Alignment explanation
Indices: 383574--383929 Score: 550
Period size: 123 Copynumber: 2.9 Consensus size: 123
383564 CTTTTTATTT
* * *
383574 TAATATCTCATATTAAAATGAAAATATATATCTTTAGAGAAATATATGGAAGGTTTATTAAAACA
1 TAATATCTCATATTAAAATGGAAATAT-T-CCTTTAAAGAAATATATGGAAGGTTTATTAAAACA
* *
383639 TTACATCCTTTCCAAAAGGATATTAAGTTCCATGTTTTTAATATTCAATTTCCTTTTATA
64 TTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCAATTTCCTTTTATA
* * *
383699 TAATATCTCATATTAAAATGGAAATATTCCTTTAAAGGAATATGTGGAAGGTTTATTAAAACATA
1 TAATATCTCATATTAAAATGGAAATATTCCTTTAAAGAAATATATGGAAGGTTTATTAAAACATT
* *
383764 ATATCCTTTTCAAAAGGAAATTAACTTCCATGTTTTTAATATTCAATTTCCTTTTATA
66 ATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCAATTTCCTTTTATA
* *
383822 TAATTTCTAATATTAAAATGGAAATATTCCTTTAAAGAAATATATGGAAGGTTTATTAAAACATT
1 TAATATCTCATATTAAAATGGAAATATTCCTTTAAAGAAATATATGGAAGGTTTATTAAAACATT
* * * *
383887 TTATCCTTTCCAAAATGATATTAACTTCCAAGCTTTTAATATT
66 ATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATT
383930 TAACGAAATC
Statistics
Matches: 210, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
123 183 0.87
124 1 0.00
125 26 0.12
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (123 bp):
TAATATCTCATATTAAAATGGAAATATTCCTTTAAAGAAATATATGGAAGGTTTATTAAAACATT
ATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTCAATTTCCTTTTATA
Found at i:384070 original size:106 final size:107
Alignment explanation
Indices: 383859--384081 Score: 335
Period size: 107 Copynumber: 2.1 Consensus size: 107
383849 TCCTTTAAAG
*
383859 AAATATATGGAAGGTTTATTAAAACATTTTATCCTTTCCAAAATGATATTAACTTCCAAGCTTTT
1 AAATATATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAATGATATTAACTTCCAA-CTTTT
383924 AATATTTAACGAAATCATTATAATTAATAATTATAATTACGTT
65 AATATTTAACGAAATCATTATAATTAATAATTATAATTACGTT
* * *
383967 AAAT-TATGGAAGGTTTATTTAAACATTATATTCTTTCCAAAA-GAATATTAATTTCCATA-TTT
1 AAATATATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAATG-ATATTAACTTCCA-ACTTT
*
384029 TAATATTTAATGAAATCATTATAATTAATAATTATAATTACGTT
64 TAATATTTAACGAAATCATTATAATTAATAATTATAATTACGTT
*
384073 GAAGTATAT
1 -AAATATAT
384082 TCAGTAAATA
Statistics
Matches: 105, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
106 47 0.45
107 50 0.48
108 8 0.08
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (107 bp):
AAATATATGGAAGGTTTATTAAAACATTATATCCTTTCCAAAATGATATTAACTTCCAACTTTTA
ATATTTAACGAAATCATTATAATTAATAATTATAATTACGTT
Found at i:396559 original size:19 final size:19
Alignment explanation
Indices: 396537--396582 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
396527 TACAATGTCA
396537 ATGCAAGTATAGTAGATAG
1 ATGCAAGTATAGTAGATAG
396556 ATGCAAGTATAGTAGATAG
1 ATGCAAGTATAGTAGATAG
*
396575 ATGTAAGT
1 ATGCAAGT
396583 CTATCGGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.41, C:0.04, G:0.26, T:0.28
Consensus pattern (19 bp):
ATGCAAGTATAGTAGATAG
Found at i:416559 original size:17 final size:17
Alignment explanation
Indices: 416534--416566 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
416524 TAATGCACTA
416534 AAATACAATGAAAATGG
1 AAATACAATGAAAATGG
*
416551 AAATGCAATGAAAATG
1 AAATACAATGAAAATG
416567 CTTACTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (17 bp):
AAATACAATGAAAATGG
Found at i:426120 original size:904 final size:906
Alignment explanation
Indices: 421417--426546 Score: 8619
Period size: 906 Copynumber: 5.7 Consensus size: 906
421407 TAGGGTAAAT
* *
421417 AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACATACTTCATTTTCTCATTCAATC
1 AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
* * *
421482 TTCGTTGTTGCTCAATCGATTGCCTGCCTTCTTCTTTCAACTTAATTTTTTGCATGAAAAAAGAT
66 TTCGTTGTTGCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
* *
421547 GGACTAATGCCTCGAATATCAGCAATACTCCAAGAAATAGCTTGTTTATGCTGCTTAAGAATATG
131 GGACTAATGCCTCGAATATCGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATG
* * * *
421612 GATGAATTTTTCTTCTTGAGTTGCGTCTAGTTTTACGGAGACAATAACTGGGAGAGAACTATTGT
196 GATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTACTATTGT
* * *
421677 CGCCAAGAAATACATATTTCAGATGAGCAGGCAATGGCTCCAATACTACAGTAGGAACTTATTCA
261 CGCCAAGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCA
* * * * *
421742 ATAGATGACTTAAAAACTGGTGTCATTCAGTTGGCTAAATCAAAAGATTCAATCTACCATCCGTG
326 ATAGATGGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTG
* * *
421807 CTTTAGGTCAATGTTATTAGCTTCAACCATGCTGTCGTAGTCAACTAAAAATTCATCATCACATG
391 CTTTAGGTCAATGTTATTAGCTTCAACCATGCTGTCGCAGTCAGCTAAAAATTCATCATCAGATG
421872 TCACCGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCT
456 TCACCGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCT
*
421937 AGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTTAAAAACACTGAAGGT
521 AGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGT
* * *
422002 AACATGCTCATCATCATGTCGTATGGTCAATTCACCTTTGTAAACATCGATAAGAGTGCGTCTGG
586 AACATGCTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGG
** *
422067 TAGCTAAAAATTGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCATTGCAGTTAAGTATAATA
651 TAGCTAAAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATA
*
422132 AAATCAACTGGAAAAACGAATTTTTTCGCACGAACTAAAATGTCTTTGATCTGCCATTCAAGTTG
716 AAATCAACTGGAAAAACGAATTTTTTCGCACAAACTAAAATGTCTTTGATCTGCCATTCAAGTTG
*
422197 AGCCAAGGATCGATCCGCTAATTCCAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTAACT
781 AGCCAAGGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTAACT
* *
422262 TTCTGAAGGTAGATAGTGATATAAGGTTGATGCTAGGTCCCAAATCTCATAAAGCTTTACC
846 TTCTGAAGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCGCATAAAGCTTTACC
* *
422323 AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCATCATTTTATCATTCAATC
1 AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
* *
422388 TTTGTTGTTGCTCAATCGATTGCTTGCCGTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
66 TTCGTTGTTGCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
* *
422453 GGACTAATGCCTCGACTATCGGCAATACTCCAAGCAATAGCTTGTTTATGCTACTTAAGAATATG
131 GGACTAATGCCTCGAATATCGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATG
* *
422518 GATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAAACAATAACTGGAAGAGTACTATTGT
196 GATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTACTATTGT
* *
422583 CGCCAAGAAATACATATTTTAGATGAGCAGGCAGTGACTCCAATTCTACAGTAGGAACTTCTTCA
261 CGCCAAGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCA
*
422648 ATAGATGGCTTCAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTG
326 ATAGATGGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTG
* * *
422713 CTTTAGGTCACTGTTACTAGCTTCAACCATGCTGACGCAGTCAGCTAAAAATTCATCATCAGATG
391 CTTTAGGTCAATGTTATTAGCTTCAACCATGCTGTCGCAGTCAGCTAAAAATTCATCATCAGATG
* * * * *
422778 TCATCACAAATTCTTCAGAATGTAATGCGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCT
456 TCACCGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCT
* *
422843 AGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTTAAAAACATTGAAGGT
521 AGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGT
*
422908 AACATGCTCATCATCATGTCGCATTGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGG
586 AACATGCTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGG
422973 TAGCTAAAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATA
651 TAGCTAAAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATA
* *
423038 AAATCAACTGCAAAAAC-AATTTTTTTCGCACGAACTAAAATGTCTTTGATCTGCCATTCAAGTT
716 AAATCAACTGGAAAAACGAA-TTTTTTCGCACAAACTAAAATGTCTTTGATCTGCCATTCAAGTT
*
423102 GAGCCAAGGATCGATCCGCTAATTCCAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTAAC
780 GAGCCAAGGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTAAC
* *
423167 TTTCTGAAGGTAGATAGTGATATAAGGTTGATGCTAGGTCCCAAATCTCATAAAGCTTTACC
845 TTTCTGAAGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCGCATAAAGCTTTACC
* *
423229 AATTCCAGAGTCAAGGCACTTTATAATTTTCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
1 AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
423294 TTCGTTGTTGCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
66 TTCGTTGTTGCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
* ** * *
423359 TGACTAATGCCTCGAATATCGATAATACTCCAAGCAATAGCTTGTTTATGCTACTAAAGAATATG
131 GGACTAATGCCTCGAATATCGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATG
* * *
423424 GATTAATTTTTCTTCTTGAGTTGCATCCAGTTTTTCGGAGACAATAACTGGAAGAGTACTATTGT
196 GATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTACTATTGT
423489 CGCCAAGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCA
261 CGCCAAGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCA
*
423554 ATAGATGGCTTCAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTG
326 ATAGATGGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTG
423619 CTTTAGGTCAATGTTATTAGCTTCAACCATGCTGTCGCAGTCAGCTAAAAATTCATCATCAGATG
391 CTTTAGGTCAATGTTATTAGCTTCAACCATGCTGTCGCAGTCAGCTAAAAATTCATCATCAGATG
* *
423684 TCACCGCAAATTCTTCAAAAAGTAATGTTCTTTGGTCATTGAAGTCTTCCTCAATTAAACATTCT
456 TCACCGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCT
* *
423749 AGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAGAAACACTGAAAGT
521 AGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGT
*
423814 AACATGCAT-TTCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCG
586 AACATGC-TCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCG
* * *
423878 GTAGCTAAAAAACGTCGTCCTAAGAATATGGGAACCTCTTTGTCTGCCTTGCAATTAAGTATAAT
650 GTAGCTAAAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAAT
* ** * * * *
423943 AAAATCAACTGGAAAAACGAATTTTTCCGCATTAAGTAAATTGTCCTTGATCTGCCACTCAAGTT
715 AAAATCAACTGGAAAAACGAATTTTTTCGCACAAACTAAAATGTCTTTGATCTGCCATTCAAGTT
* * *
424008 GGGCCAAGGATCGATCCGCTAATTGCAATGTCATTGCAGCGGGGTTCATATTACCAATTCCTAAC
780 GAGCCAAGGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTAAC
*
424073 TTTCTGAAGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCGCATAAAGGTTTACC
845 TTTCTGAAGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCGCATAAAGCTTTACC
*
424135 AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCGTCATTTTCTCATTCAATC
1 AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
*
424200 TTCGTTGTTGCTCAATCGATTTCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
66 TTCGTTGTTGCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
* *
424265 GGACTAATGCCTCGAATATCGGTAATACTCCAAGCAATAGCTTGATTATGCTG-TATAAGAATAT
131 GGACTAATGCCTCGAATATCGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCT-TAAGAATAT
*
424329 GGATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAGACAATAATTGGGAGAGTACTATTG
195 GGATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTACTATTG
* * * *
424394 TCTCCGAGAAATACATATTTCAGATGTGCAGGCAGTGGCTCCAATTTTACAGTAGGAACTTCTTC
260 TCGCCAAGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTC
* *
424459 AATAGATGGCTTGAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAATATTCAATCTACCATCCGT
325 AATAGATGGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGT
* * *
424524 GCTTTAGGTCAATGTTATTAGCTTCAACCATGTTGTCACAGTCACCTAAAAATTCATCATCAGAT
390 GCTTTAGGTCAATGTTATTAGCTTCAACCATGCTGTCGCAGTCAGCTAAAAATTCATCATCAGAT
*
424589 GTCACCGCAAATTGTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTC
455 GTCACCGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTC
* * *
424654 TAGCTCATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACAATTAAGG
520 TAGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGG
* * *
424719 TAACATTCTCAGCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGATAGTGCGTCCG
585 TAACATGCTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCG
*
424784 GTAGCTAAAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTATGCCTTGCAGTTAAGTATAAT
650 GTAGCTAAAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAAT
* * * * * *
424849 AAAATCAACTGCAAAAACTAATTTTTCCGCACAAACTAAAATGTCTTCGATCTGCAATCCAAGTT
715 AAAATCAACTGGAAAAACGAATTTTTTCGCACAAACTAAAATGTCTTTGATCTGCCATTCAAGTT
* * * * **
424914 GAACCAAGGATCGATCCGCTAATTGTATTGTCACTGCAATGGGGTAAATATTACCAATTCCTAAC
780 GAGCCAAGGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTAAC
* *
424979 TTTCTCAAGGTAGATAGTGGTATAAGGTTTATGCTAGGTCCCAAATCGCATAAAGCTTTACC
845 TTTCTGAAGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCGCATAAAGCTTTACC
*
425041 AATTCCAGAGTCAAGCCAATTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
1 AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
* * *
425106 TTCGTTGTT-ATCCAATCGATTGCTTGCCTTCCTCTTTCAACTTAATTTTGTGCTTGCAAAAAGA
66 TTCGTTGTTGCT-CAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGA
425170 TGGACTAATGCCTCGAATATCGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATAT
130 TGGACTAATGCCTCGAATATCGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATAT
* *
425235 GGATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTACGGAGACAATAACTAGGAGAGTACTATTG
195 GGATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTACTATTG
* * *
425300 TCGCCAAGAAATACATATTTCATATGAGAAGGCAGTGGCTCCAATTCTAAAGTAGGAACTTCTTC
260 TCGCCAAGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTC
* *
425365 AATAGATGGCTTGAAAACTGGAGTCGTTCCT-TTGGCTAAATCTAAATATTCAATCTACCATCCG
325 AATAGATGGCTTAAAAACTGGAGTCGTT-CTGTTGGCTAAATCTAAAGATTCAATCTACCATCCG
425429 TGCTTTAGGTCAATGTTATTAGCTTCAACCATTG-TGTCGCAGTCAGCTAAAAATTCATCATCAG
389 TGCTTTAGGTCAATGTTATTAGCTTCAACCA-TGCTGTCGCAGTCAGCTAAAAATTCATCATCAG
*
425493 ATGTCACCGCAAATTCTTCAAAAAGTAATGCGCTTTGGTCATTGAATTCTTCCTCAATTAAACAT
453 ATGTCACCGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACAT
* *
425558 TCTAGCACATCAACAGTGTGACATTGTTCTTTACCCTTGCATGGAAAAAAGTCAAAAACACT-AA
518 TCTAGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAA
* *
425622 GGTAACATGCTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATTAGAGTGCATC
583 GGTAACATGCTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTC
425687 CGGTAGCT-AAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATA
648 CGGTAGCTAAAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATA
*
425751 ATAAAATCAATTGGAAAAACGAATTTTTTCGCACAAACTAAAATGTCTTTGATCTGCCATTCAAG
713 ATAAAATCAACTGGAAAAACGAATTTTTTCGCACAAACTAAAATGTCTTTGATCTGCCATTCAAG
* * *
425816 TTGAGCCAAGGATCGATCTGCTAATTGCAATGTCACAGTAGTGGGGTTCATATTACCAATTCCTA
778 TTGAGCCAAGGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTA
* *
425881 ACTTTTTGAAGGTAGACT-GTGGTATAAGGTTGATGCTAGGTCCCAAATCGCATAAAGGTTTACC
843 ACTTTCTGAAGGTAGA-TAGTGGTATAAGGTTGATGCTAGGTCCCAAATCGCATAAAGCTTTACC
* *
425945 AATTCCAGTGTCAAGCAACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
1 AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
426010 TTCGTTGTTGCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
66 TTCGTTGTTGCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
* *
426075 TGACTAATGCCTCGAATATCGGCAATACTCCAGGCAATAGCTTGTTTATGCTGCTTAAGAATATG
131 GGACTAATGCCTCGAATATCGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATG
*
426140 GATTAA-TTTTCTTCTTAAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTACTATTGT
196 GATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTACTATTGT
* *
426204 CGCCAAGAAATACATATTTCAGATTAGCAGGTAGTGGCTCCAATTCTACAGTAGGAACTTCTTCA
261 CGCCAAGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCA
* *
426269 ATAGATGGCTTAAAAACTGGAGTCGTTCTGTTAGCTAAATCTAAAGATTCTATCTACCATCCGTG
326 ATAGATGGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTG
* * *
426334 CTTTCGGTCAATGTTATTAGCTTCAACCATGCTGTCGCAGTAAGCAAAAAATTCATCA-CAAGAT
391 CTTTAGGTCAATGTTATTAGCTTCAACCATGCTGTCGCAGTCAGCTAAAAATTCATCATC-AGAT
* *
426398 GTCACCGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTTAATTATTCCTCAATTAAACATTC
455 GTCACCGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTC
* *
426463 TAGCACATCAACAGTGTGACATTGTTCTTTATCATTGCATGGAATAAATTCAAAAACACTGAAGG
520 TAGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGG
*
426528 TAACA-GCTCATCTTCATGT
585 TAACATGCTCATCATCATGT
426547 TCTAGAGTCA
Statistics
Matches: 3965, Mismatches: 244, Indels: 33
0.93 0.06 0.01
Matches are distributed among these distances:
902 5 0.00
903 360 0.09
904 427 0.11
905 77 0.02
906 3088 0.78
907 8 0.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (906 bp):
AATTCCAGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATC
TTCGTTGTTGCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGAT
GGACTAATGCCTCGAATATCGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATG
GATTAATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTACTATTGT
CGCCAAGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCA
ATAGATGGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTG
CTTTAGGTCAATGTTATTAGCTTCAACCATGCTGTCGCAGTCAGCTAAAAATTCATCATCAGATG
TCACCGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCT
AGCACATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGT
AACATGCTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGG
TAGCTAAAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATA
AAATCAACTGGAAAAACGAATTTTTTCGCACAAACTAAAATGTCTTTGATCTGCCATTCAAGTTG
AGCCAAGGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTAACT
TTCTGAAGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCGCATAAAGCTTTACC
Found at i:427088 original size:585 final size:590
Alignment explanation
Indices: 425954--427131 Score: 1897
Period size: 585 Copynumber: 2.0 Consensus size: 590
425944 CAATTCCAGT
425954 GTCAAGCAACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTTGTT
1 GTCAAGCAACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTTGTT
* *
426019 GCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATTGACTAATG
66 GCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTAATA
*
426084 CCTCGAATATCGGCAATACTCCAGGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTAATTT
131 CCTCGAATATCGGCAATACT-------ATA-C-TGTTTATGCCGCTTAAGAATATGGATTAATTT
* *
426149 TCTTCTTAAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTACTATTGTCGCCAAGAAA
187 TCTTCCTAAGTTGCATCTAGTTTTGCGGAGACAATAACTAGGAGAGTACTATTGTCGCCAAGAAA
* *
426214 TACATATTTCAGATTAGCAGGTAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGATGGCT
252 TACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGATGGCT
* * *
426279 TAAAAACTGGAGTCGTTCTGTTAGCTAAATCTAAAGATTCTATCTACCATCCGTGCTTTCGGTCA
317 TAAAAACTGGAGTCGTTCTGTTAGCTAAATCTAAAGATTCAATCTACCATCCATGCTTTCAGTCA
*
426344 ATGTTATTAGCTTCAACCATGCTGTCGCAGTAAGCAAAAAATTCATCACAAGATGTCACCGCAAA
382 ATGTTAATAGCTTCAACCATGCTGTCGCAGTAAGCAAAAAATTCATCACAAGATGTCACCGCAAA
* * *
426409 TTCTTCAAAAAGTAATGTGCTTTGGTCATTTAATTATTCCTCAATTAAACATTCTAGCACATCAA
447 TTCTTCAAAAAGTAATGCGCTTTGGCCATTGAATTATTCCTCAATTAAACATTCTAGCACATCAA
*
426474 CAGTGTGACATTGTTCTTTATCATTGCATGGAATAAATTCAAAAACACTGAAGGTAACA-GCTCA
512 CAGTGTGACATTGTTCTCTATCATTGCATGGAA-AAATTCAAAAACACTGAAGGTAACATGCTCA
*
426538 TCTTCATGTTCTAGA
576 TCATCATGTTCTAGA
* *
426553 GTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCTTTCATTTTCTCATTCAATCTTCGTTGTT
1 GTCAAGCAACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTTGTT
*
426618 GCTCAATCGATTGCTTGCCTTCTTTTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTAATA
66 GCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTAATA
* *
426683 CGTCGAATATCGGC-A-ACT-TA-T-TTT-TGCCGCTTAAGAATATGGATTAATTTTTCTTCCTG
131 CCTCGAATATCGGCAATACTATACTGTTTATGCCGCTTAAGAATATGGATTAA-TTTTCTTCCTA
*
426742 AGTTGCATCTAGTTTTGCGGAGACAATAACTAGGAGAGTACTATTGTCGCCATGAAATACATATT
195 AGTTGCATCTAGTTTTGCGGAGACAATAACTAGGAGAGTACTATTGTCGCCAAGAAATACATATT
*
426807 TCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGATGGTTTAAAAACT
260 TCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGATGGCTTAAAAACT
*
426872 GGAGTCGTTCTGTTAGCTTAATCTAAAGATTCAATCTACCATCCATGCTTT-AGTACAATGTTAA
325 GGAGTCGTTCTGTTAGCTAAATCTAAAGATTCAATCTACCATCCATGCTTTCAGT-CAATGTTAA
* * *
426936 TAGCTTCAACCATGCTGTCGCAGTCAGCTAAAAATTCATCATCAA-ATGTCACCGTAAATTCTTC
389 TAGCTTCAACCATGCTGTCGCAGTAAGCAAAAAATTCATCA-CAAGATGTCACCGCAAATTCTTC
* *
427000 AGAAAGTAATGCGCTTTGGCCATTGAATTCTTCCTCAATTAAACATTCTAGCACATCAACAGTGT
453 AAAAAGTAATGCGCTTTGGCCATTGAATTATTCCTCAATTAAACATTCTAGCACATCAACAGTGT
* *
427065 GACATTGTTCTCTATCCTTGCATGGAAAAATTCAAAAACATTGAAGGTAACATGCTCATCATCAT
518 GACATTGTTCTCTATCATTGCATGGAAAAATTCAAAAACACTGAAGGTAACATGCTCATCATCAT
427130 GT
583 GT
427132 CGAATGGTCA
Statistics
Matches: 544, Mismatches: 31, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
584 48 0.09
585 348 0.64
586 4 0.01
589 2 0.00
597 3 0.01
598 1 0.00
599 138 0.25
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (590 bp):
GTCAAGCAACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTTGTT
GCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTAATA
CCTCGAATATCGGCAATACTATACTGTTTATGCCGCTTAAGAATATGGATTAATTTTCTTCCTAA
GTTGCATCTAGTTTTGCGGAGACAATAACTAGGAGAGTACTATTGTCGCCAAGAAATACATATTT
CAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGATGGCTTAAAAACTG
GAGTCGTTCTGTTAGCTAAATCTAAAGATTCAATCTACCATCCATGCTTTCAGTCAATGTTAATA
GCTTCAACCATGCTGTCGCAGTAAGCAAAAAATTCATCACAAGATGTCACCGCAAATTCTTCAAA
AAGTAATGCGCTTTGGCCATTGAATTATTCCTCAATTAAACATTCTAGCACATCAACAGTGTGAC
ATTGTTCTCTATCATTGCATGGAAAAATTCAAAAACACTGAAGGTAACATGCTCATCATCATGTT
CTAGA
Found at i:428470 original size:906 final size:903
Alignment explanation
Indices: 426550--432696 Score: 9378
Period size: 881 Copynumber: 6.9 Consensus size: 903
426540 TTCATGTTCT
*
426550 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCTTTCATTTTCTCATTCAATCTTCGTT
1 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
* *
426615 GTTGCTCAATCGATTGCTTGCCTTCTTTTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTA
66 GTTGCTCAATCGATTGCTCGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTA
* * * *
426680 ATACGTCGAATATCGGC-A-ACT--------TA---T-TTT-TGCCGCTTAAGAATATGGATTAA
131 ATGCCTCGAATATAGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTAA
* * * *
426730 TTTTTCTTCCTGAGTTGCATCTAGTTTTGCGGAGACAATAACTAGGAGAGTACTATTGTCGCCAT
196 TTTTTCTTCTTGAGTTGCATCTAGTTTTGCAGAGACAATAACTGGGAGAGTACTATTGTCGCCAA
426795 GAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGAT
261 GAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGAT
* * * *
426860 GGTTTAAAAACTGGAGTCGTTCTGTTAGCTTAATCTAAAGATTCAATCTACCATCCATGCTTTA-
326 GGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTTAG
* *
426924 GTACAATGTTAATAGCTTCAACCATGCTGTCGCAGTCAGCTAAAAATTCATCATCAAATGTCACC
391 GT-CAATGTTATTAGCTTCAACCA---TGTCGCAGTCAGCTAAAAATTCATCATCAGATGTCACC
* * * *
426989 GTAAATTCTTCAGAAAGTAATGCGCTTTGGCCATTGAATTCTTCCTCAATTAAACATTCTAGCAC
452 GCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCAC
* *
427054 ATCAACAGTGTGACATTGTTCTCTATCCTTGCATGG-AAAAATTCAAAAACATTGAAGGTAACAT
517 ATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAACAT
* *
427118 GCTCATCATCATGTCGAATGGTCAATTCACCTTTGTAAACATCGATAAGAGTGCGTCCGGTAGCT
582 GCTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGCT
*
427183 AAAAAAGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATAAAATC
647 AAAAATGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATAAAATC
* * * * *
427248 AACAGGAAAAACGAATTTTTTCGCTCGAACTAAAATGTCTTTGATCTGCCTTTCAAGTTGAGCCA
712 AACTGGAAAAATGAATTTTTCCGCACGAACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGCCA
* * *
427313 AGGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTAACATTCTA
777 AGGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATTTTACCAATTCCTAACTTTCTG
*
427378 AAGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCACATAAAGCTTTAACAATTCC
842 AAGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCACATAAAGCTTTACCAATTCC
*
427440 AGAGTCAAAG-CACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCTTTCAATCTTCGT
1 AGAGTC-AAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGT
* *
427504 TATTGCTCAATCGATTGCTTGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACT
65 TGTTGCTCAATCGATTGCTCGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACT
* * *
427569 AATGCCTCGAATATTGGCAATACGCAAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTA
130 AATGCCTCGAATATAGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTA
*
427634 ATTTTTCTTCTTGAGTTGCATCTAGTTTTGCGGAGACAATAACTGGGAGAGTAC-ATTTGTCG-C
195 ATTTTTCTTCTTGAGTTGCATCTAGTTTTGCAGAGACAATAACTGGGAGAGTACTA-TTGTCGCC
*
427697 AAGAAATACATATTTCAGATGAGCAGGAAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAG
259 AAGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAG
* *
427762 ATGGCTTAAAAACTAGAGTCGTTCTGTTGGATAAATCTAAAGATTCAATCTACCATCCGTGCTTT
324 ATGGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTT
*
427827 AGGTCAATGTTATTATCTTCAACCATGCTGCCGCAGTCAGCTAAAAATTCATCATCAGATGTCAC
389 AGGTCAATGTTATTAGCTTCAACCATG-T--CGCAGTCAGCTAAAAATTCATCATCAGATGTCAC
*
427892 CGTAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCA
451 CGCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCA
*
427957 CATCAACAGTGTGACATTGTTCTCTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAACA
516 CATCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAACA
* * * *
428022 TGCTCATCATCATGTCACATGGTCAATTCATCTTTGTAACCATCGATAAGAGTGCGTCCGGTAGC
581 TGCTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGC
*
428087 TAAAAATGGTCGTCCCTAAGATTATGGGAACCTCTTTGTCTACCTTGCAGTTAAGTATAATAAAA
646 TAAAAATGGTCGT-CCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATAAAA
* * * *
428152 TTAACTGGAAAAATGAATTTTTCCACACGTACTAAAATGTCTTTGATTTGCCCTTCAAGTTGAGC
710 TCAACTGGAAAAATGAATTTTTCCGCACGAACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGC
* *
428217 CAAGGATCGATCCGCTAATTGCAATGTTACTGTAGTGGGGTTCATTTTACCAATTCCTAACTTTC
775 CAAGGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATTTTACCAATTCCTAACTTTC
* * * * *
428282 TAAAGGTAGATATTCGTATAAGGTTGATGCTAGGTCCTAAATCGCATAAAGCTTTACCAATTCC
840 TGAAGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCACATAAAGCTTTACCAATTCC
*
428346 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTAATTCAATCTTCGTT
1 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
* * **
428411 GTTGCTCAATCGATTGCTCGCCATCTTCTTTCAACTTAATTTTGTGCATTCTGAAAGATGGACTA
66 GTTGCTCAATCGATTGCTCGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTA
* * *
428476 ATTCCTCGAATATAGGAAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGGTTAA
131 ATGCCTCGAATATAGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTAA
* *
428541 TTTTTCTTCTTGAGTTGCATCTAATTTTGCAGAGACAATAACTGGAAGAGTACTATTGTCGCCAA
196 TTTTTCTTCTTGAGTTGCATCTAGTTTTGCAGAGACAATAACTGGGAGAGTACTATTGTCGCCAA
* * * * * *
428606 GAAATGCATAGTTCAGATGTGAAGGCAGTGGCTCCAATTCTGCATTAGGAACTTCTTCAATAGAT
261 GAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGAT
* *
428671 GGCTTCAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCATGCTTTAG
326 GGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTTAG
428736 GTCAATGTTATTAGCTTCAACCA--T-GC--T--G--------------T-AGATGTCACCGCAA
391 GTCAATGTTATTAGCTTCAACCATGTCGCAGTCAGCTAAAAATTCATCATCAGATGTCACCGCAA
428779 ATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCACATCA
456 ATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCACATCA
* * * *
428844 ACAGTGTGACATTGTGCTTTATCCTTGCATGGAAAAAATTCTAAAACACTGAAGGTAACAAGCTA
521 ACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAACATGCTC
* ** * * *
428909 ATCATCAGGTCGCATGGTCAATTCACCTTTGTATGCATCGATAAGAGTGCGTCCGATAGATAAAA
586 ATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGCTAAAA
* *
428974 ATGGTCGTCCTAAGATTATGGGAACCTTTTTTTCTGCCTTGCAGTTAAGTATAATAAAATCAACT
651 ATGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATAAAATCAACT
* * * *
429039 TGAAAAATGAATTTTTACACACGAACTAAAATGTCTTTAATCTGCCCTTCAAGTTGAGCCAAGGA
716 GGAAAAATGAATTTTTCCGCACGAACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGCCAAGGA
429104 TCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATTTTACCAATTCCTAACTTTCTGAAGG
781 TCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATTTTACCAATTCCTAACTTTCTGAAGG
* *
429169 TAGATAGTGGTATAAGGTTGATGCTAGGTCCAAAATCGCATAAAGCTTTACCAATTCC
846 TAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCACATAAAGCTTTACCAATTCC
429227 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
1 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
* * * * *
429292 GTTGCTTAATCGATTGCTCGCCTTCTTCTATCAACTTAATTTTGTGCATTCTAAAAGAAGGACTA
66 GTTGCTCAATCGATTGCTCGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTA
* * * *
429357 ATGCCTCGAATATAGGCAATACTCCAAGTAATAGCTTATTTATGCTACTTAAGGATATGGATTAA
131 ATGCCTCGAATATAGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTAA
* *
429422 TTTTTCTTCTTGAGTTGCATCTAGTTTTACAGAGACAATAACTGGAAGAGTACTATTGTCGCCAA
196 TTTTTCTTCTTGAGTTGCATCTAGTTTTGCAGAGACAATAACTGGGAGAGTACTATTGTCGCCAA
* * * * *
429487 GAAATGCTTATTTCAGATGAACAGGCAATGGCTCCAATTCTACATTAGGAACTTCTTCAATAGAT
261 GAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGAT
* *
429552 GGCTTAAATACTGGAGTCTTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTTAG
326 GGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTTAG
429617 GTCAATGTTATTAGCTTCAACCA--T-GC--T--G--------------T-AGATGTCACCGCAA
391 GTCAATGTTATTAGCTTCAACCATGTCGCAGTCAGCTAAAAATTCATCATCAGATGTCACCGCAA
429660 ATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCACATCA
456 ATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCACATCA
** *
429725 ACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACAAAGAAGGTAACAAGCTC
521 ACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAACATGCTC
* * *
429790 ATCATCGTGTCGCATGGTAAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGATAAAA
586 ATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGCTAAAA
* * * *
429855 ATGGACGTCCTAAGATTATGGGAACCTCCTTGCCTGCCTTGTAGTTAAGTATAATAAAATCAACT
651 ATGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATAAAATCAACT
* *
429920 GGAAAAACGAATTTTTCCGCACGTACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGCCAAGGA
716 GGAAAAATGAATTTTTCCGCACGAACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGCCAAGGA
* * *
429985 TCGATCCGCTAATTGTAATGTCACTGCAGTGGGGTTCATATTACCAATTCCTAACTTTTTGAAGG
781 TCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATTTTACCAATTCCTAACTTTCTGAAGG
* ** *
430050 TAGACAGTGGCGTAAGGTT-ATTCCTAGGTCCCAAATCACATAAAGCTTTACCAATTCC
846 TAGATAGTGGTATAAGGTTGA-TGCTAGGTCCCAAATCACATAAAGCTTTACCAATTCC
* *
430108 AGAGACAAGCCACTTTATAATTTCCTTTTAAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
1 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
* ** * *
430173 GTTGCTCAATCGATTCCTTACCTTCTCCTTTCAACTTAATTTTGTGCATGCAAAATGATGGACTA
66 GTTGCTCAATCGATTGCTCGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTA
* * *
430238 ATGCCTCGAATATCGGTAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAAAATATGGATTAA
131 ATGCCTCGAATATAGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTAA
* *
430303 TTTTTCTTCTTGAGTTGCATCTAGTTTTGCATAGACAATAACTGGGAGAGTACTATTGTCGCTAA
196 TTTTTCTTCTTGAGTTGCATCTAGTTTTGCAGAGACAATAACTGGGAGAGTACTATTGTCGCCAA
* *
430368 GAAATACATATTTCAGATGACCAGGTAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGAT
261 GAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGAT
* *
430433 GGCTTAAAAACTAGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATACGTGCTTTAG
326 GGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTTAG
*
430498 GTCAATGTTATTAGTTTCAACCATGATATCGCAGTCAGCTAAAAATTCATCATCAGATGTCACCG
391 GTCAATGTTATTAGCTTCAACCATG---TCGCAGTCAGCTAAAAATTCATCATCAGATGTCACCG
* * *
430563 CAAATTCTTCAAAAAGTAATGTGCTTTAGTCATTGAATTCGTCCTCAATTACACATTCTAGCACA
453 CAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCACA
* * * * *
430628 TCAACTGTGTGACATTGTTCTTTATCCTTGCTTGGAAAAATTTCAAGAACACTGAAGGTAACATT
518 TCAACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAACATG
* * * * *
430693 CTCATCATCATGTCACACGGTCAATTCTCCTTTGTAAATATCGATGAGAGTGCGTCTGGTAGCTA
583 CTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGCTA
*
430758 AAAATGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTACAATAAAATCA
648 AAAATGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATAAAATCA
* * ** *
430823 ACTGGAAAAATGATTTTTTTCGTGCGAACTAAAATGTCTTTGATCTGCCCTCCAAGTTGAGCCAA
713 ACTGGAAAAATGAATTTTTCCGCACGAACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGCCAA
** * *
430888 GGATCGATCCGCTAATTGCAATGAAATTGCAGTGGGGTTCATTTTACCAATTCCTAACTTTTTGA
778 GGATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATTTTACCAATTCCTAACTTTCTGA
* * * *
430953 AGGTAGATATTGGTATAAGGTTGCTGCTAGGTCCAAAATCGCATAAAGCTTTACCAATTCC
843 AGGTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCACATAAAGCTTTACCAATTCC
431014 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
1 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
* * *
431079 GTTGCTCAATTGATTGCTCGCCTTCTTCTTTCAACTTAATTTTGTGCATTCGAAAAGATGGACTA
66 GTTGCTCAATCGATTGCTCGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTA
*
431144 ATGCCTCGAATATAGGCAATACTCCAAGCAATAGCTTGTTTATGTTGCTTAAGAATATGGATTAA
131 ATGCCTCGAATATAGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTAA
* * *
431209 TTTTTCTTCTTGAGTTGCATCTAGTTTTGCAGAGACAATAACTAGAAGAGTACTATTGTCGCCAT
196 TTTTTCTTCTTGAGTTGCATCTAGTTTTGCAGAGACAATAACTGGGAGAGTACTATTGTCGCCAA
* *
431274 GAAATGCATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACATTAGGAACTTCTTCAATAGAT
261 GAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGAT
*
431339 GGCTTAAAAACTGGAGTCGTTCTATTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTTAG
326 GGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTTAG
431404 GTCAATGTTATTAGCTTCAACCA--T-GC--T--G--------------T-AGATGTCACCGCAA
391 GTCAATGTTATTAGCTTCAACCATGTCGCAGTCAGCTAAAAATTCATCATCAGATGTCACCGCAA
431447 ATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCACATCA
456 ATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCACATCA
*
431512 ACAGTGTGAAATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAACGA-GCT
521 ACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAAC-ATGCT
431576 CATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGCTAAA
585 CATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGCTAAA
*
431641 AATGGTCGTCCTAAGATTATGGGAACCTCTTTTTCTGCCTTGCAGTTAAGTATAATAAAATCAAC
650 AATGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATAAAATCAAC
* * * *
431706 TGGAAAAATGACTTTTTTCGCACGAACTAAAATGTCTTTGACCTGCCCTTCAAGTTTAGCCAAGG
715 TGGAAAAATGAATTTTTCCGCACGAACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGCCAAGG
* * *
431771 ATCGATCCGCTAATTACAATGTCACTGCAGTAGGGTTCATTTTACCAATTCATAACTTTCTGAAG
780 ATCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATTTTACCAATTCCTAACTTTCTGAAG
** *
431836 GTACTTAGTGGTATAAGGTTGATGCTAGGTCCCAAATCATATAAAGCTTTACCAATTCC
845 GTAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCACATAAAGCTTTACCAATTCC
*
431895 AGAGTCAAGCTACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
1 AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
431960 GTTGCTCAATCGATTGGC-CGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACT
66 GTTGCTCAATCGATT-GCTCGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACT
* ** *
432024 AATGCCTCGAATATCGATAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAACAATATGGATTA
130 AATGCCTCGAATATAGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTA
* * *
432089 ATTTTTCTTCTTGAGTTGCATCTTGTTTTGCAGAGATAATAGCTGGGAGAGTACTATTGTCGCCA
195 ATTTTTCTTCTTGAGTTGCATCTAGTTTTGCAGAGACAATAACTGGGAGAGTACTATTGTCGCCA
* * *
432154 CGAAATACATATTTCAGACGAGCAGGCAGTGGCTCCAATTCTACAGTTGGAACTTCTTCAATAGA
260 AGAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGA
* **
432219 TGGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCAACCATTTGTGCTTTA
325 TGGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTTA
*
432284 GGTCAATGTTATTAGCTTCAACCATGTTGTCGCAGTCAGCTAAAAATTCATCATCAGATGTCATC
390 GGTCAATGTTATTAGCTTCAACCA---TGTCGCAGTCAGCTAAAAATTCATCATCAGATGTCACC
***
432349 GCAAATTCTTCAAAAAGTAATGTGCTTCCATCATTGAATTCTTCCTCAATTAAACATTCTAGCAC
452 GCAAATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCAC
* * * * *
432414 ATCGACAGTGTAACATTTTTCATTATCCCTT-CATGGAAAAAATTCAAAAACACTAAAGGTAACA
517 ATCAACAGTGTGACATTGTTCTTTAT-CCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAACA
* * * *
432478 TTCTCATCAGCTTGTCGCATGGTCAATTCGCCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGC
581 TGCTCATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGC
* *
432543 TAAAAATGGTCGTCCTATGATTATGGGAACCTCTTTGTCTGCCTTGCAATTAAGTATAATAAAAT
646 TAAAAATGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATAAAAT
* *
432608 CAACTGGAAAAATGAATTTTTCCACATGAACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGCC
711 CAACTGGAAAAATGAATTTTTCCGCACGAACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGCC
432673 AAGGATCGATCCGCTAATTGCAAT
776 AAGGATCGATCCGCTAATTGCAAT
Statistics
Matches: 4821, Mismatches: 354, Indels: 148
0.91 0.07 0.03
Matches are distributed among these distances:
880 1 0.00
881 2240 0.46
882 208 0.04
883 1 0.00
886 2 0.00
887 4 0.00
889 2 0.00
890 136 0.03
891 6 0.00
892 2 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 1 0.00
900 4 0.00
901 5 0.00
902 1 0.00
903 1 0.00
904 280 0.06
905 186 0.04
906 1589 0.33
907 149 0.03
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (903 bp):
AGAGTCAAGCCACTTTATAATTTCCTTTTTAACAACTTCCTTCATTTTCTCATTCAATCTTCGTT
GTTGCTCAATCGATTGCTCGCCTTCTTCTTTCAACTTAATTTTGTGCATGCAAAAAGATGGACTA
ATGCCTCGAATATAGGCAATACTCCAAGCAATAGCTTGTTTATGCTGCTTAAGAATATGGATTAA
TTTTTCTTCTTGAGTTGCATCTAGTTTTGCAGAGACAATAACTGGGAGAGTACTATTGTCGCCAA
GAAATACATATTTCAGATGAGCAGGCAGTGGCTCCAATTCTACAGTAGGAACTTCTTCAATAGAT
GGCTTAAAAACTGGAGTCGTTCTGTTGGCTAAATCTAAAGATTCAATCTACCATCCGTGCTTTAG
GTCAATGTTATTAGCTTCAACCATGTCGCAGTCAGCTAAAAATTCATCATCAGATGTCACCGCAA
ATTCTTCAAAAAGTAATGTGCTTTGGTCATTGAATTCTTCCTCAATTAAACATTCTAGCACATCA
ACAGTGTGACATTGTTCTTTATCCTTGCATGGAAAAAATTCAAAAACACTGAAGGTAACATGCTC
ATCATCATGTCGCATGGTCAATTCACCTTTGTAAACATCGATGAGAGTGCGTCCGGTAGCTAAAA
ATGGTCGTCCTAAGATTATGGGAACCTCTTTGTCTGCCTTGCAGTTAAGTATAATAAAATCAACT
GGAAAAATGAATTTTTCCGCACGAACTAAAATGTCTTTGATCTGCCCTTCAAGTTGAGCCAAGGA
TCGATCCGCTAATTGCAATGTCACTGCAGTGGGGTTCATTTTACCAATTCCTAACTTTCTGAAGG
TAGATAGTGGTATAAGGTTGATGCTAGGTCCCAAATCACATAAAGCTTTACCAATTCC
Done.