Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011485.1 Kokia drynarioides strain JFW-HI SEQ_126469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2755
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.27

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:709 original size:17 final size:18

Alignment explanation


    Indices: 687--727  Score: 66
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        677 GCAGGAAGGA

                              
        687 AGAGGAGA-GAGGGGGAG
          1 AGAGGAGAGGAGGGGGAG

                      *       
        704 AGAGGAGAGGCGGGGGAG
          1 AGAGGAGAGGAGGGGGAG

                  
        722 AGAGGA
          1 AGAGGA

        728 TTTGGGCTTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  17    8  0.36
  18   14  0.64

ACGTcount: A:0.34, C:0.02, G:0.63, T:0.00


Consensus pattern (18 bp):   
AGAGGAGAGGAGGGGGAG

Found at i:899 original size:7 final size:7

Alignment explanation


    Indices: 887--915  Score: 58
    Period size: 7  Copynumber: 4.1  Consensus size: 7

        877 GCTTGTGTAG

                   
        887 GTGGGAA
          1 GTGGGAA

                   
        894 GTGGGAA
          1 GTGGGAA

                   
        901 GTGGGAA
          1 GTGGGAA

                   
        908 GTGGGAA
          1 GTGGGAA

             
        915 G
          1 G

        916 GGTCCATTCC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.28, C:0.00, G:0.59, T:0.14


Consensus pattern (7 bp):   
GTGGGAA

Done.