Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011487.1 Kokia drynarioides strain JFW-HI SEQ_126472, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2288
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30


Found at i:912 original size:20 final size:21

Alignment explanation


    Indices: 887--925  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        877 GTCCATTTGC

                      *          
        887 CCCGGAA-GAGTAGAGTATTG
          1 CCCGGAAGGAATAGAGTATTG

                               
        907 CCCGGAAGGAATAGAGTAT
          1 CCCGGAAGGAATAGAGTAT

        926 CGCGATGGCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    7  0.41
  21   10  0.59

ACGTcount: A:0.33, C:0.15, G:0.33, T:0.18


Consensus pattern (21 bp):   
CCCGGAAGGAATAGAGTATTG

Found at i:984 original size:45 final size:44

Alignment explanation


    Indices: 931--1052  Score: 144
    Period size: 41  Copynumber: 2.8  Consensus size: 44

        921 AGTATCGCGA

                             *  *                         
        931 TGGCTCGTCAAACTCAGCCTCATATCCTT-CCATTGAGTATTACGG
          1 TGGCTCGTCAAACT-AGGCTGATATCCTTGCC-TTGAGTATTACGG

                                         *          *   
        976 TGGCTCGTC-AA--AGGCTGATATCCTTGGCTTGAGTATTGCGG
          1 TGGCTCGTCAAACTAGGCTGATATCCTTGCCTTGAGTATTACGG

                                          *     
       1017 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA
          1 TGGCTCGTCAAACT-AGGCTGATATCCTTGCCTTGA

       1053 TAAGCTATAC


Statistics
Matches: 68,  Mismatches: 4, Indels: 10
        0.83            0.05        0.12

Matches are distributed among these distances:
  41   33  0.49
  42    3  0.04
  44    2  0.03
  45   30  0.44

ACGTcount: A:0.20, C:0.24, G:0.25, T:0.31


Consensus pattern (44 bp):   
TGGCTCGTCAAACTAGGCTGATATCCTTGCCTTGAGTATTACGG

Done.