Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011488.1 Kokia drynarioides strain JFW-HI SEQ_126473, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4754
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:2246 original size:16 final size:16

Alignment explanation


    Indices: 2227--2257  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       2217 TAAAACAAAA

                  *         
       2227 AAAAATTAAATAAATT
          1 AAAAATCAAATAAATT

                           
       2243 AAAAATCAAATAAAT
          1 AAAAATCAAATAAAT

       2258 AAGCATATGG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26


Consensus pattern (16 bp):   
AAAAATCAAATAAATT
Done.