Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011491.1 Kokia drynarioides strain JFW-HI SEQ_126476, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3297
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Warning! 50 characters in sequence are not A, C, G, or T
Found at i:376 original size:216 final size:214
Alignment explanation
Indices: 1--545 Score: 651
Period size: 216 Copynumber: 2.5 Consensus size: 214
* * * * * * *
1 AAACAACATTTAGTCTTTGGATTAAAAACTTTATTACGTGAGAATTGTTTCTCTCTCGATTCTTG
1 AAACAACTTTTGGTCTTT-GAATAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCTTG
* * * * * * *
66 GATGAAGTGCCAAACTTGTGAAACATTTCCTAGTTCTTTTATAACTTCGGTTCCAGATAGTAGTC
65 GACGAACTTCCGAACTTGTCAAACATTT-ATAGTTCTTTTATAACTTCGGTTCCAGAGAGTAGTC
* * **
131 GAAATGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGATCAGGAAATCACATCATTTGGT
129 GAAACGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGACCAGGAAATCACATCATACGGT
* *
196 CTAAATAGTTTGTCATTTTGT
194 CAAAATAGTTTATCATTTTGT
*
217 AAACAACTTTTGGTCTTTGAATCAAAAACTTTTTTACGAGAGAATTATTTCTCTCTTGGTTCTTG
1 AAACAACTTTTGGTCTTTGAAT-AAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCTTG
* * * *** *
282 GACGAACTTCTGAACTGGTTAAACATTTATAAGTTCTTTTATAACTTCGGTTTTTGAGAGTATTC
65 GACGAACTTCCGAACTTGTCAAACATTTAT-AGTTCTTTTATAACTTCGGTTCCAGAGAGTAGTC
* * * * * *
347 -AAGACGATCCTTTCCTTTGACCTATTTTTTGAAGATTCTATGACCGGGAAATCGCATCATACGG
129 GAA-ACGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGACCAGGAAATCACATCATACGG
*
411 TGAAAATAGTTTATCATTTTGT
193 TCAAAATAGTTTATCATTTTGT
* * * * *
433 AAATAAATTTTGGTCTTTGAAATAAAAGCTTTTTTACGTTAGAATTCTTTCTCTCTTGGTTCTTG
1 AAACAACTTTTGGTCTTTG-AATAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCTTG
*
498 GACGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTC
65 GACGAACTTCCGAACTTGTCAAACATTTA-TAGTTCTTTTATAACTTC
546 NNNNNNNNNN
Statistics
Matches: 280, Mismatches: 44, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
215 6 0.02
216 271 0.97
217 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (214 bp):
AAACAACTTTTGGTCTTTGAATAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCTTGG
ACGAACTTCCGAACTTGTCAAACATTTATAGTTCTTTTATAACTTCGGTTCCAGAGAGTAGTCGA
AACGATCCATTCCTTTGACCAATTTTTTGAACATTCCATGACCAGGAAATCACATCATACGGTCA
AAATAGTTTATCATTTTGT
Found at i:1294 original size:216 final size:215
Alignment explanation
Indices: 596--3297 Score: 3028
Period size: 216 Copynumber: 12.5 Consensus size: 215
586 NNNNNNNNNN
* * * * * * *
596 TTACGAGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTGGTTAAACATTTATAAG
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTATGAG
* * *
661 TTCTTTTATAACTTCGG-TTCTTGAGAGTATTCAAGACGATCCTTTCCTTTGACCTATTTTTTGA
66 TTCTTTTATAACTTCGGTTTC-TGAGAGTATTCAATACGATCCATTCCTTTGACC-AATTTTTGA
* * * ** * *
725 AGATTCTATGAC-AGGGAAATCGCATCATACGGTC-AAAATAGTTTATCATTTTGTAAATAACTT
129 ACATTCCATG-CTCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGTAAACAACTT
* **
788 TTGGTCTTTGAAATAAAAGTTTTT
192 TTGGTCTTTGAATTAAAAACTTTT
* * * *
812 TTACGTTAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACATTTACGAG
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTATGAG
* * * * ** *
877 TTCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCGAG
66 TTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTTT-GAA
* * * * * *
942 CATTTCATTCTCGGG-AATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAAAACTTTTG
130 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTG
1006 GTCTTTGAATTAAAAACTTTT
195 GTCTTTGAATTAAAAACTTTT
* * **
1027 TTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAG
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTATGAG
* *
1092 TTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGATCCATTCCTTTGACCAATTTCTTGAA
66 TTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTT-TTGAA
* * * *
1157 CATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTATAAACAACATTTA
130 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTG
* * *
1222 GTCATTGGATTAAAAACTTTA
195 GTCTTTGAATTAAAAACTTTT
* * * * * * *
1243 TTACATGAGAATTGTTTCTCTCTCGATTCTTGAATGAAGTGCCGAACTTGTCAAACATTTCCT-A
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTT-ATGA
* * * * *
1307 GTTCTTTTATAACTTCGGTTCCAGATAGTAGTTGAGAT--GATCCATTCCTTTGACCGATTTTTT
65 GTTCTTTTATAACTTCGGTTTCTGAGAGTA-TTCA-ATACGATCCATTCCTTTGACC-AATTTTT
* ** *
1370 GAACATTCCGTGCTCGGGAAATCGCATCATTTGGTCTAAAACTTTTGTCATTTTGTAAGA-AGCT
127 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA-ACAACT
*
1434 TTTGGTCTTTGAATTAAAATCTTTT
191 TTTGGTCTTTGAATTAAAAACTTTT
* * *
1459 TTACGTGAGACTTGTTTCTCTCTTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTCCT-A
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTT-ATGA
* * * * * * ***
1523 GTTCTTTTATAACTTCGATTCCAGATAGTAGTCGAGGTGATCCATTCCTTTGACCAATTTTTTGA
65 GTTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAA-TTTTTGA
* *
1588 ACATTCCATACTCGGGAAATCGCATCATTTGGTCTAAAACGTTTGTCATTTTGTAAA-AAGCTTT
129 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAA-CTTT
1652 TGGTCTTTGAATTAAAAA-TTTT
193 TGGTCTTTGAATTAAAAACTTTT
* *
1674 TTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCCGAACTTGTC-AACATTTACT-A
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTA-TGA
** * * * * * * **
1737 AATCTTTTGTAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTTCTTCAACCAATTTTTCGA
65 GTTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTTT-GA
* * * *
1802 ACACTCCATGATCGGGATATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
129 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTT
*
1867 GGACTTTGAATTAAAAACTTTT
194 GGTCTTTGAATTAAAAACTTTT
* * * * ** * * *
1889 TAATGTGAGACTTGTTTCTCTATT-GTTCTTGGATGAACTTTTGAACTTGTTAAACATTTACGAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTATGAG
* * * * * *
1953 TTCTTTTATAACATCGGTTTCTAAGAGTATTCAAGATGATCCATTCCTTTGACCTATTTTCCGAA
66 TTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTT-TGAA
* * * *
2018 TATTCCATGATCGGGAAATCGCATCATTTGGTC-AAAATAGTTTGTCATTTTGTAAATAACTTTG
130 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGTAAACAACTTTT
* *
2082 GGTCTTTGAACTAAAAGCTTTT
194 GGTCTTTGAATTAAAAACTTTT
* * *
2104 TTACG-GTAGAATTCTTTCTCTCCTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGA
1 TTACGTG-AGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTATGA
* * * * * ** *
2168 GTTCTTTTATAACTTCAGTTCCTGGGAGTATTTAATACGATCCATTCCTTCGACTTATTTTCCGA
65 GTTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTT-TGA
* * * *
2233 ACATAT-CATTCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAA-ACACTT
129 ACAT-TCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACA-ACTT
*
2296 TTGGTCTTTGATTTAAAAACTTTT
192 TTGGTCTTTGAATTAAAAACTTTT
* * ** **
2320 TTACGTGAGAATTGGTTCTCTCTAGGTTCTCAGACAAACTTCCGAACTTGTCAAACATTTATGAG
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTATGAG
* * *
2385 TTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGATCCATTCCTTCGACCAATTTCTTGAA
66 TTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTT-TTGAA
* * * * *
2450 CATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAAAGGTTTGTCATTTTATAAACAACATTTA
130 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTG
* *
2515 GT-TATTGGATTAAAAACTTTA
195 GTCT-TTGAATTAAAAACTTTT
* * * *
2536 TTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGATGAAGTGCCGAACTTGTCAAACATTTCCT-A
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTT-ATGA
* * * * *
2600 GTTCTTTTATAACTTCGG-TTCTAGATAGTAGTCGAGATGATCCATTCCTTTGACCAATTTTTTG
65 GTTCTTTTATAACTTCGGTTTCT-GAGAGTATTCAATACGATCCATTCCTTTGACCAA-TTTTTG
* *
2664 AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAACA-TTTGTCATATTGTAAA-AAGCT
128 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGTAAACAA-CT
*
2727 TTTGGTCTTTGAATTAAAATCTTTT
191 TTTGGTCTTTGAATTAAAAACTTTT
*
2752 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTACT-A
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTA-TGA
** * * * * * *
2816 AATCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATTTCTTCGACCAATTTTTCGA
65 GTTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTTT-GA
* ** * * * *
2881 AAATTCCATTATTGGGATATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
129 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTT
*
2946 GGTCTATGAATTAAAAACTTTT
194 GGTCTTTGAATTAAAAACTTTT
* ** ** * * *
2968 TTAC--GAGAATAGTTTCTCAATTGGTTCTTGGACAAACTTTCAAAGTTGTCAAACATTTATGAG
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTATGAG
** * * **
3031 TTC-TTTATTAACTTCATTTTCTGAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCGA
66 TTCTTTTA-TAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTTT-GA
* * * * * *
3095 ACATTTCATGCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAAAACTTTA
129 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTT
* *
3160 GGTCTTTGATTTAAAAACTATT
194 GGTCTTTGAATTAAAAACTTTT
* * * **
3182 TTATGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAG
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTATGAG
* * *
3247 TTCTTTTATAACTTTGGTTTTTGTGAGTATTCAATACGATCCATTCCTTTG
66 TTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTG
Statistics
Matches: 2117, Mismatches: 320, Indels: 98
0.84 0.13 0.04
Matches are distributed among these distances:
213 10 0.00
214 326 0.15
215 435 0.21
216 1311 0.62
217 33 0.02
218 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (215 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTATGAG
TTCTTTTATAACTTCGGTTTCTGAGAGTATTCAATACGATCCATTCCTTTGACCAATTTTTGAAC
ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTGG
TCTTTGAATTAAAAACTTTT
Found at i:2299 original size:861 final size:854
Alignment explanation
Indices: 596--3297 Score: 3324
Period size: 861 Copynumber: 3.1 Consensus size: 854
586 NNNNNNNNNN
* ** * * * * * *
596 TTACGAGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTGGTTAAACATTTATAAG
1 TTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAG
* * * *
661 TTCTTTTATAACTTCGGTTCTTGAGAGTATTCAAGACGATCCTTTCCTTTGACCTATTTTTTGAA
66 TTCTTTTATAACTTCGATTCTAGAGAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTTGAA
* * ** * *
726 GATTCTATGAC-AGGGAAATCGCATCATACGGTC-AAAATAGTTTATCATTTTGTAAATAACTTT
131 CATTCCAT-ACTAGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGTAAACAACTTT
* * * * * *
789 TGGTCTTTGAAATAAAAGTTTTTTTACGTTAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTTC
194 TGGTCTTTGAATTAAAA-ATTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTC
* * * * * *
854 CGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCC
258 CGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCC
** * * * *
919 ATTCCTTCGACTTATTTTTCGAGCATTTCATTCTCGGGAATCGCATCACTTGGTCTAAAAAGTTT
323 ATTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAATCGCATCATTTGGTCT-AAAAGTTT
* * *
984 GGCATGTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGGTTCTCTC
387 GTCATATTGT-AAAAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTC
* ** * * *
1049 TTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTTCT
451 TTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAATTCTTTTATAACTTCGGTTTCT
* * * * *
1114 AAGAGTATTCAATACGATCCATTCCTTTGACCAATTTCTTGAACATTCCATGCTTGGGAAATCGC
516 AAGAGTATTCAAGACGATCCATTCCTTTGACCATTTTC-CGAAAATTCCATGATTGGGAAATCGC
* * * * *
1179 ATCATTTGGTCTAAAA-AGTTTGTCATTTTATAAACAACATTTAGTCATTGGATTAAAAACTTTA
580 ATCATTTGGTC-AAAATAGTTTGTCATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAAACTTTT
* * * * * * *
1243 TTACATGAGAATTGTTTCTCTCTCGATTCTTGAATGAAGTGCCGAACTTGTCAAACATTTCCTAG
643 TTACGT-AGAATTGTTTCTCTCT-GGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAG
* * * * * * * * ** *
1308 TTCTTTTATAACTTCGGTTCCAGATAGTAGTTGAGATGATCCATTCCTTTGACCGATTTTTTGAA
706 TTCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCGAA
* * ** * * *
1373 CATTCCGTGCTCGGGAAATCGCATCATTTGGTCTAAAACTTTTGTCATTTTGTAAGAAGCTTTTG
771 CATT-CATGCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGTAA-AAACTTTTG
* *
1438 GTCTTTGAATTAAAATCTTTT
834 GTCTTTGATTTAAAAACTTTT
* * * ** * *
1459 TTACGTGAGACTTGTTTCTCTCTTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTCCT-A
1 TTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTT-ATGA
* * * * **
1523 GTTCTTTTATAACTTCGATTCCAGATAGTAGTCGAGGTGATCCATTCCTTTGACCAATTTTTTGA
65 GTTCTTTTATAACTTCGATTCTAGAGAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTTGA
* *
1588 ACATTCCATACTCGGGAAATCGCATCATTTGGTCTAAAACGTTTGTCATTTTGTAAA-AAGCTTT
130 ACATTCCATACTAGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAA-CTTT
*
1652 TGGTCTTTGAATTAAAAATTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCC
194 TGGTCTTTGAATTAAAAATTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCC
** *
1717 GAACTTGTC-AACATTTACTAAATCTTTTGTAACTTCGGTTCCTGATAGTAGTCAAGACGATCCA
259 GAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCA
* * * *
1781 TTTCTTCAACCAATTTTTCGAACACTCCATGATCGGGATATCGCATCATTTGGTCTAAATAGTTT
324 TTCCTTCGACCAATTTTTCGAACATTCCATGCTCGGGA-ATCGCATCATTTGGTCTAAA-AGTTT
* * * * * *
1846 GTCATTTTGTAAACAACTTTTGGACTTTGAATTAAAAACTTTTTAATGTGAGACTTGTTTCTCTA
387 GTCATATTGTAAA-AACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTC
** * *
1911 TT-GTTCTTGGATGAACTTTTGAACTTGTTAAACATTTACGAATTCTTTTATAACATCGGTTTCT
451 TTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAATTCTTTTATAACTTCGGTTTCT
* * *
1975 AAGAGTATTCAAGATGATCCATTCCTTTGACCTATTTTCCGAATATTCCATGATCGGGAAATCGC
516 AAGAGTATTCAAGACGATCCATTCCTTTGACC-ATTTTCCGAAAATTCCATGATTGGGAAATCGC
* * *
2040 ATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTGGGTCTTTGAACTAAAAGCTTTTT
580 ATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTT-GGTCTTTGAATTAAAAACTTTTT
*
2105 TACGGTAGAATTCTTTCTCTCCTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGT
644 TAC-GTAGAATTGTTTCTCT-CTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGT
* *
2170 TCTTTTATAACTTCAGTTCCTGGGAGTATTTAATACGATCCATTCCTTCGACTTATTTTCCGAAC
707 TCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCGAAC
*
2235 ATATCATTCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAACACTTTTGG
772 AT-TCATGCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAA-ACTTTTGG
2300 TCTTTGATTTAAAAACTTTT
835 TCTTTGATTTAAAAACTTTT
* *
2320 TTACGTGAGAATTGGTTCTCTCTAGGTTCTCAGACAAACTTCCGAACTTGTCAAACATTTATGAG
1 TTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAG
* * * * *
2385 TTCTTTTATAACTTTGGTTTCTA-AGAGTATTCAATACGATCCATTCCTTCGACCAATTTCTTGA
66 TTCTTTTATAAC-TTCGATTCTAGAGAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTTGA
* * * * *
2449 ACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAAAGGTTTGTCATTTTATAAACAACATTT
130 ACATTCCATACTAGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
2514 AGT-TATTGGATTAAAAACTTTATTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGATGAAGTGC
195 GGTCT-TTGAATTAAAAA-TTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTC
* * *
2578 CGAACTTGTCAAACATTTCCTAGTTCTTTTATAACTTCGGTT-CTAGATAGTAGTCGAGATGATC
258 CGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCT-GATAGTAGTCAAGACGATC
* * * *
2642 CATTCCTTTGACCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAACAT
322 CATTCCTTCGACCAATTTTTCGAACATTCCATGCTCG-GGAATCGCATCATTTGGTCTAAAA-GT
*
2707 TTGTCATATTGTAAAAAGCTTTTGGTCTTTGAATTAAAATCTTTTTTACGTGAGAATTGTTTCTC
385 TTGTCATATTGTAAAAA-CTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTC
* * * *
2772 TCTTGGTTCTTGGATGAAGTTCCGAACTTGTCAAACATTTACTAAATCTTTTATAACTTCGGTTC
449 TCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAATTCTTTTATAACTTCGGTTT
* * * * * * * *
2837 CTGATAGTAGTCAAGACGATCCATTTCTTCGACCAATTTTTCGAAAATTCCATTATTGGGATATC
514 CTAAGAGTATTCAAGACGATCCATTCCTTTGACC-ATTTTCCGAAAATTCCATGATTGGGAAATC
* * *
2902 ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTATGAATTAAAAACTTT
578 GCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAAACTTT
* ** * * * *
2967 TTTACG-AGAATAGTTTCTCAAT-TGGTTCTTGGACAAACTTTCAAAGTTGTCAAACATTTATGA
642 TTTACGTAGAATTGTTTCTC--TCTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGA
* *
3030 GTTC-TTTATTAACTTCATTTTCTGAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCG
705 GTTCTTTTA-TAACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCG
3094 AACATTTCATGCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAAAACTTT
769 AACA-TTCATGCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGT-AAAAACTTT
* *
3159 AGGTCTTTGATTTAAAAACTATT
832 TGGTCTTTGATTTAAAAACTTTT
*
3182 TTATGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAG
1 TTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAG
* * * * * *
3247 TTCTTTTATAACTTTGGTTTTTGTGAGTATTCAATACGATCCATTCCTTTG
66 TTCTTTTATAACTTCGATTCTAGAGAGTATTCAAGACGATCCATTCCTTTG
Statistics
Matches: 1589, Mismatches: 218, Indels: 65
0.85 0.12 0.03
Matches are distributed among these distances:
860 11 0.01
861 586 0.37
862 485 0.31
863 331 0.21
864 173 0.11
865 3 0.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (854 bp):
TTACGTGAGAATTGGTTCTCTCTTGGTTCTCGGACAAACTTCCGAACTTGTCAAACATTTATGAG
TTCTTTTATAACTTCGATTCTAGAGAGTATTCAAGACGATCCATTCCTTTGACCAATTTTTTGAA
CATTCCATACTAGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTG
GTCTTTGAATTAAAAATTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAGTTCCGA
ACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGACGATCCATT
CCTTCGACCAATTTTTCGAACATTCCATGCTCGGGAATCGCATCATTTGGTCTAAAAGTTTGTCA
TATTGTAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGT
TCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAATTCTTTTATAACTTCGGTTTCTAAGAG
TATTCAAGACGATCCATTCCTTTGACCATTTTCCGAAAATTCCATGATTGGGAAATCGCATCATT
TGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTGGTCTTTGAATTAAAAACTTTTTTACGTAG
AATTGTTTCTCTCTGGTTCTTGGATGAACTTCCGAACTTGTCAAACATTTACGAGTTCTTTTATA
ACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTTATTTTTCGAACATTCATGCT
CGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGTTGTAAAAACTTTTGGTCTTTGATTTA
AAAACTTTT
Done.