genome.fa.s11493.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011493.1 Kokia drynarioides strain JFW-HI SEQ_126478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72908

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
843--894	26	2.0	26	92	0	86	34	11	17	36	1.86
6223--6272	22	2.3	22	85	0	73	76	0	6	18	0.99
8646--8710	22	2.9	21	80	13	60	76	0	3	20	0.91
8647--8704	13	4.2	13	79	16	64	77	0	3	18	0.91
14311--14356	21	2.2	21	88	0	65	73	2	6	17	1.14
14311--14370	21	2.9	20	82	7	59	73	1	8	16	1.16
18888--18921	6	5.7	6	100	0	68	0	64	0	35	0.94
22349--22462	36	3.2	35	83	5	147	35	24	11	28	1.90
22532--22656	23	5.4	23	82	0	133	48	11	4	36	1.58
24040--24664	315	2.0	315	91	1	1020	33	22	13	31	1.92
25843--25877	18	1.9	18	88	0	52	62	22	0	14	1.31
26920--26957	18	2.0	20	85	10	53	42	13	18	26	1.87
27278--27320	20	2.2	20	83	8	52	30	23	6	39	1.81
27321--27442	23	5.3	23	83	0	127	48	9	7	35	1.63
38220--38315	41	2.3	41	90	0	147	37	28	5	29	1.79
42327--42454	47	2.7	48	86	7	172	27	27	2	42	1.67
42367--42474	47	2.5	43	88	8	148	29	26	1	41	1.66
43666--43763	41	2.3	42	87	3	135	26	30	3	39	1.71
52364--52426	8	8.1	8	74	13	51	3	57	1	38	1.24
52404--52428	2	12.5	2	100	0	50	0	52	0	48	1.00
55199--55308	57	1.9	57	88	0	166	24	28	3	43	1.71
58787--58953	50	3.3	49	79	7	156	53	7	3	35	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58805--58982	50	3.5	50	80	3	196	54	8	3	33	1.48
62435--62497	24	2.6	24	90	5	92	50	4	11	33	1.59
62582--63064	246	2.0	246	83	1	610	45	11	13	30	1.78
62567--63098	82	6.5	81	80	2	548	44	11	13	30	1.79
63570--63745	50	3.5	50	83	6	203	55	7	3	32	1.48
63575--63722	50	2.9	51	88	4	208	55	8	2	33	1.45
66228--66256	4	7.2	4	100	0	58	0	75	0	24	0.80
69390--69509	49	2.5	48	79	4	141	25	30	4	40	1.75
72004--72040	18	2.1	18	89	0	56	24	27	0	48	1.51
72723--72760	13	3.0	12	88	11	58	0	34	0	65	0.93
72786--72818	9	3.8	9	88	8	50	0	12	3	84	0.72
72787--72825	17	2.2	18	86	4	53	5	12	2	79	1.00

Tables:   1

The End!