genome.fa.s11496.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011496.1 Kokia drynarioides strain JFW-HI SEQ_126481, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  296730

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101--132	9	3.6	9	91	0	55	0	46	0	53	1.00
129--168	17	2.4	17	87	8	55	0	25	0	75	0.81
8742--8797	25	2.2	24	81	9	67	57	10	5	26	1.54
11137--11168	2	16.0	2	100	0	64	50	0	0	50	1.00
13733--13822	18	4.4	19	81	14	92	7	6	18	66	1.39
13735--13822	40	2.1	42	91	6	144	7	6	18	67	1.39
13733--13822	22	4.3	22	81	14	111	7	6	18	66	1.39
13733--13836	22	4.9	23	78	16	93	8	6	18	66	1.41
13829--13872	12	3.8	12	81	6	54	11	2	13	72	1.21
13833--13894	23	2.7	23	77	7	63	9	4	16	69	1.33
13824--13874	12	4.3	12	82	5	50	9	5	15	68	1.36
15838--16633	204	4.0	193	77	9	722	39	9	10	39	1.73
15838--16633	394	2.0	393	87	2	1161	39	9	10	39	1.73
16660--16824	61	2.8	59	82	3	195	24	15	9	50	1.73
16709--16807	29	3.2	31	77	7	112	23	15	11	50	1.75
16660--16823	60	2.7	61	84	2	199	23	15	9	51	1.72
17199--18467	202	6.4	201	77	10	1182	41	10	10	38	1.73
17411--18148	189	3.8	190	79	9	796	41	9	9	39	1.71
17170--18469	393	3.3	389	81	6	1424	41	10	10	37	1.73
19608--19643	2	18.0	2	94	0	63	0	47	0	52	1.00
24749--24780	4	8.0	4	100	0	64	0	25	0	75	0.81
39918--39947	6	5.0	6	95	0	51	30	33	16	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54461--54506	23	2.0	23	100	0	92	34	17	13	34	1.88
64584--64636	12	4.4	12	83	9	72	77	7	1	13	1.06
64581--64638	9	6.4	9	75	18	50	75	10	1	12	1.11
64597--64679	23	3.6	23	75	8	69	72	10	4	12	1.26
64597--64692	23	4.2	22	75	10	68	70	14	4	10	1.29
67484--67519	6	6.0	6	96	0	63	0	19	13	66	1.24
67468--67519	18	2.8	18	85	8	70	1	19	11	67	1.31
68810--68997	20	9.9	20	72	15	134	23	0	9	67	1.23
68800--68903	54	1.9	54	98	0	199	25	0	7	67	1.17
68853--68946	43	2.2	43	100	0	188	24	0	8	67	1.19
68793--68999	97	2.1	96	95	1	369	24	0	8	66	1.24
68897--69030	53	2.6	53	95	2	236	21	1	9	67	1.28
68934--69016	26	3.2	26	72	16	89	22	2	9	65	1.35
69023--69092	21	3.4	21	67	15	65	21	5	12	60	1.53
69105--69261	58	2.7	60	85	8	232	23	19	8	49	1.75
69105--69261	61	2.7	58	84	10	228	23	19	8	49	1.75
74950--74980	3	10.3	3	100	0	62	0	32	0	67	0.91
75474--75498	3	8.3	3	100	0	50	32	68	0	0	0.90
80068--80097	2	15.0	2	100	0	60	50	0	0	50	1.00
81307--81357	20	2.6	20	87	9	70	56	1	1	39	1.22
83423--83469	24	1.9	25	82	4	60	59	4	0	36	1.17
84634--84673	16	2.5	17	76	23	50	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85164--85204	2	20.5	2	100	0	82	48	0	0	51	1.00
105076--105102	2	13.5	2	100	0	54	48	0	0	51	1.00
115757--115831	24	3.0	24	78	7	78	32	2	1	64	1.16
117388--117524	27	5.1	27	100	0	274	40	14	14	29	1.86
122987--123053	31	2.2	31	88	0	98	32	17	2	46	1.64
127080--127114	17	2.1	17	100	0	70	48	5	17	28	1.69
128725--128894	23	7.4	24	86	2	156	41	23	23	11	1.87
131633--131657	2	12.5	2	100	0	50	48	52	0	0	1.00
131658--131682	2	12.5	2	100	0	50	48	0	0	52	1.00
131862--131903	17	2.4	17	84	11	50	23	28	2	45	1.66
135259--135319	23	2.7	22	80	9	70	50	0	1	47	1.10
137279--137315	17	2.1	18	85	14	51	56	0	2	40	1.13
137257--137317	25	2.3	26	78	13	63	55	0	1	42	1.09
143579--143607	2	14.5	2	100	0	58	48	0	0	51	1.00
144734--144761	2	14.0	2	100	0	56	50	0	0	50	1.00
151348--151372	6	4.2	6	100	0	50	36	48	0	16	1.46
164747--164793	8	5.9	8	83	14	53	0	12	0	87	0.55
164749--164793	23	2.0	23	91	4	74	0	11	0	88	0.50
164760--164793	14	2.3	15	95	5	61	0	8	0	91	0.43
164753--164787	9	4.0	9	96	3	63	0	8	0	91	0.42
172876--172914	18	2.1	19	85	4	53	25	15	15	43	1.86
177212--177273	25	2.3	28	76	17	69	37	3	3	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177212--177287	24	3.0	24	77	19	66	36	2	2	57	1.26
177282--177356	17	4.1	18	74	16	55	62	2	2	32	1.23
177282--177356	19	4.1	18	74	19	64	62	2	2	32	1.23
177307--177349	21	2.2	19	83	8	50	65	4	4	25	1.32
187563--187608	24	2.0	25	83	12	62	41	4	2	52	1.33
199956--199997	22	1.9	22	85	0	57	69	4	7	19	1.31
202696--202829	47	2.9	46	79	2	151	27	11	17	43	1.84
205999--206086	23	3.7	22	73	16	77	35	18	5	40	1.74
205996--206108	49	2.3	48	87	4	156	37	17	5	39	1.73
206042--206108	23	2.8	25	74	21	70	37	16	5	40	1.73
217139--217199	25	2.5	26	79	10	67	60	1	3	34	1.23
222188--222243	25	2.2	25	77	0	58	42	3	1	51	1.29
222842--222875	12	2.8	12	90	0	50	47	5	41	5	1.52
239826--239851	2	13.0	2	100	0	52	50	0	0	50	1.00
239976--240022	24	1.9	25	86	4	69	29	10	0	59	1.31
244566--244694	65	2.0	65	98	0	249	41	17	17	24	1.89
248341--248431	31	3.0	31	81	12	109	59	2	6	31	1.35
249298--249350	9	6.2	8	79	16	54	67	0	30	1	1.01
249298--249350	24	2.1	26	83	16	67	67	0	30	1	1.01
264048--264078	6	5.2	6	100	0	62	32	0	67	0	0.91
272904--272953	14	3.6	14	82	15	59	8	14	0	78	0.97
272913--272970	8	6.8	8	77	14	62	3	15	0	81	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273027--273055	5	5.8	5	100	0	58	20	0	79	0	0.74
273063--273088	11	2.4	11	100	0	52	80	0	11	7	0.89
273834--273901	23	2.9	23	75	18	68	47	0	0	52	1.00
273865--273938	31	2.4	31	80	13	89	43	0	2	54	1.14
274703--274737	17	2.0	18	88	5	54	60	0	2	37	1.12
277731--277817	37	2.2	40	90	6	144	41	0	4	54	1.21
278603--278636	16	2.1	16	88	5	50	58	2	0	38	1.13
278589--278636	17	2.9	16	78	9	51	52	2	2	43	1.24
281076--281173	32	3.1	32	92	0	169	36	12	18	32	1.88
284835--284924	45	2.0	45	100	0	180	40	11	11	37	1.76

Tables:   1

The End!