genome.fa.s11500.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011500.1 Kokia drynarioides strain JFW-HI SEQ_126485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32122

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1201--1257	29	2.0	29	82	0	69	63	5	12	19	1.47
2013--2199	30	6.3	30	72	10	107	35	22	3	38	1.70
1992--2185	90	2.2	89	82	2	219	36	24	3	36	1.71
2013--2199	60	3.2	60	72	10	150	35	22	3	38	1.70
2103--2179	29	2.6	30	81	8	86	35	22	3	38	1.72
5490--5517	2	14.0	2	100	0	56	50	0	0	50	1.00
6186--6296	7	16.0	7	72	5	73	38	25	19	16	1.92
6186--6296	21	5.3	21	82	5	118	38	25	19	16	1.92
6371--6423	22	2.4	22	78	15	56	18	1	32	47	1.60
17507--17822	112	2.9	111	86	6	421	29	21	12	37	1.90
18350--18594	49	5.0	50	75	4	221	34	14	31	18	1.92
18336--18914	49	11.8	50	72	7	211	34	15	29	21	1.94
18351--18943	98	6.0	98	81	2	525	34	15	28	21	1.94
18351--18943	196	3.0	196	82	3	685	34	15	28	21	1.94
18623--18895	147	1.9	147	80	3	325	34	16	27	22	1.95
19168--19268	38	2.7	37	79	7	107	28	22	16	31	1.96
19208--19369	78	2.1	78	82	0	189	37	19	13	29	1.90
19400--20016	78	7.8	78	77	12	407	30	25	17	25	1.97
19167--20035	40	22.1	39	75	10	506	31	24	17	26	1.97
19363--20058	198	3.5	200	79	8	715	30	25	17	26	1.97
19480--20038	39	14.0	40	76	11	447	30	25	18	25	1.98
21922--22079	30	5.3	30	77	11	137	34	22	5	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24383--24487	44	2.4	44	85	0	138	16	29	19	35	1.93
24623--24703	18	4.6	18	78	6	78	20	29	18	30	1.97
24564--24687	33	3.7	33	74	8	97	19	29	17	33	1.95

Tables:   1

The End!