genome.fa.s11501.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011501.1 Kokia drynarioides strain JFW-HI SEQ_126486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  248941

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10190--10235	14	3.4	14	75	22	53	4	15	6	73	1.19
11534--11589	30	1.9	29	89	7	87	41	0	39	19	1.52
11802--11838	18	2.1	18	89	0	56	24	10	16	48	1.77
11877--11922	18	2.5	18	85	3	56	36	17	13	32	1.88
37407--37495	21	4.3	21	69	13	85	38	11	3	47	1.56
37407--37535	62	2.1	62	98	0	249	35	12	2	49	1.53
37541--37584	2	22.0	2	95	0	79	50	2	0	47	1.13
47760--48264	257	2.0	257	90	2	809	36	16	5	40	1.73
52707--52779	38	2.0	36	84	15	96	67	1	0	31	1.00
52872--52926	23	2.4	22	78	9	56	70	9	1	18	1.22
54595--54627	6	5.5	6	100	0	66	33	0	51	15	1.43
55058--55096	20	2.0	21	85	10	55	41	0	5	53	1.23
56386--56411	12	2.2	12	100	0	52	46	0	7	46	1.31
56544--56590	14	3.1	14	73	26	51	42	12	8	36	1.74
56543--56593	17	3.2	16	75	25	54	45	11	7	35	1.70
57774--57799	2	13.0	2	100	0	52	50	0	0	50	1.00
75892--75925	18	1.9	18	88	5	52	41	17	5	35	1.74
81886--81983	24	4.1	24	75	11	94	25	24	17	32	1.97
83389--83453	27	2.4	28	76	7	71	41	12	18	27	1.86
93178--93221	20	2.1	21	83	4	54	45	2	15	36	1.59
93639--93782	72	2.0	72	95	0	261	39	8	28	23	1.84
112729--112754	12	2.2	12	100	0	52	23	0	7	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117944--118048	34	3.1	34	97	2	201	35	8	5	50	1.57
117944--118078	69	2.0	69	79	5	148	38	8	4	48	1.53
121354--121393	21	1.9	21	84	0	53	27	17	5	50	1.67
131540--131572	16	2.0	17	88	5	50	36	6	6	51	1.51
131830--131868	14	2.7	15	80	8	53	56	10	7	25	1.59
132249--132294	24	1.9	23	86	8	65	54	4	6	34	1.46
132360--132393	13	2.6	13	85	0	50	58	11	0	29	1.33
141728--141761	17	2.0	17	88	11	52	0	32	0	67	0.91
142505--142534	2	15.0	2	100	0	60	0	50	0	50	1.00
145152--145208	5	12.2	5	94	5	70	1	33	0	64	1.04
149368--149406	18	2.2	18	85	0	51	20	10	2	66	1.33
154846--154935	23	4.0	22	84	5	108	15	23	20	41	1.90
156397--156446	24	2.1	24	81	7	57	8	4	14	74	1.20
159198--159361	30	5.5	29	79	11	118	37	23	6	32	1.81
159217--159361	30	4.9	30	82	5	141	35	24	6	32	1.82
159217--159361	59	2.4	60	80	4	159	35	24	6	32	1.82
159217--159385	30	5.7	30	81	6	112	34	25	7	31	1.84
176003--176112	41	2.7	41	88	5	163	50	17	23	9	1.74
176795--177904	124	9.0	124	78	8	1073	39	15	20	24	1.91
177202--177294	48	1.9	48	86	0	132	37	9	24	27	1.87
177255--177620	200	1.8	200	83	2	484	39	15	21	24	1.91
177394--177543	76	2.0	76	88	2	221	40	17	20	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177396--177572	76	2.3	76	84	1	212	41	16	20	21	1.90
176804--177844	372	2.8	369	84	4	1203	39	15	20	24	1.91
177526--177648	48	2.6	48	78	0	120	34	13	25	26	1.92
177558--177668	48	2.3	48	77	0	114	40	13	25	20	1.89
179000--179141	30	4.8	29	85	3	131	34	23	7	34	1.83
179039--179168	59	2.2	59	81	2	154	36	24	6	32	1.82
186055--186132	27	2.7	28	82	9	86	51	0	0	48	1.00
186092--186135	22	2.1	21	84	12	56	54	0	0	45	0.99
186062--186132	29	2.5	28	82	11	90	49	0	0	50	1.00
193953--193991	18	2.0	18	85	14	51	10	5	17	66	1.39
197162--197224	22	2.7	24	78	4	67	50	1	9	38	1.44
197987--198046	31	2.0	30	83	9	77	33	0	1	65	1.03
204542--204589	20	2.5	20	96	3	89	33	8	33	25	1.86
205843--206037	60	3.2	60	90	0	264	38	10	6	44	1.63
205871--205988	31	3.9	30	68	10	87	38	9	7	44	1.65
205925--206017	29	3.1	29	63	11	71	39	12	4	43	1.63
208511--208569	22	2.6	23	78	10	59	50	35	1	11	1.49
208581--208641	7	8.7	7	83	7	79	22	14	27	34	1.94
208581--208641	21	2.9	21	83	9	88	22	14	27	34	1.94
215623--215664	21	2.0	21	86	9	59	26	0	14	59	1.35
220323--220362	14	2.9	14	88	0	53	27	17	22	32	1.96
222859--222891	17	1.9	17	100	0	66	24	30	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225589--225640	21	2.5	22	78	6	63	50	36	0	13	1.42
225666--225703	20	1.9	20	94	0	67	13	10	23	52	1.71
228235--228259	3	8.3	3	100	0	50	0	32	0	68	0.90
228853--228881	3	9.7	3	100	0	58	68	0	31	0	0.89
235110--235355	117	2.1	117	97	0	465	28	7	18	44	1.77

Tables:   1

The End!