Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011502.1 Kokia drynarioides strain JFW-HI SEQ_126487, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5693
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32


Found at i:1550 original size:24 final size:24

Alignment explanation


    Indices: 1523--1573  Score: 84
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1513 AATTTTACTC

                  *              *  
       1523 AAACAACTAAACAGAGTTTAATTG
          1 AAACAAATAAACAGAGTTTAACTG

                                    
       1547 AAACAAATAAACAGAGTTTAACTG
          1 AAACAAATAAACAGAGTTTAACTG

               
       1571 AAA
          1 AAA

       1574 GATTATTTCT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.55, C:0.12, G:0.12, T:0.22


Consensus pattern (24 bp):   
AAACAAATAAACAGAGTTTAACTG

Found at i:3535 original size:24 final size:24

Alignment explanation


    Indices: 3507--3581  Score: 123
    Period size: 24  Copynumber: 3.1  Consensus size: 24

       3497 ATTTAACTCA

                  *                 
       3507 AAACAACTAAACAGAGTTTAATTG
          1 AAACAAATAAACAGAGTTTAATTG

                                    
       3531 AAACAAATAAACAGAGTTTAATTG
          1 AAACAAATAAACAGAGTTTAATTG

               *       *            
       3555 AAATAAATAAATAGAGTTTAATTG
          1 AAACAAATAAACAGAGTTTAATTG

               
       3579 AAA
          1 AAA

       3582 GATTATTTCT


Statistics
Matches: 48,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   48  1.00

ACGTcount: A:0.55, C:0.07, G:0.12, T:0.27


Consensus pattern (24 bp):   
AAACAAATAAACAGAGTTTAATTG

Done.