Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011504.1 Kokia drynarioides strain JFW-HI SEQ_126489, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10580
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:2399 original size:7 final size:6

Alignment explanation


    Indices: 2383--2416  Score: 52
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       2373 ATGCTCTATA

                                                    
       2383 TTTTTC TTTTTC TTTTTC ATTTTTC TTTTT- TTTT
          1 TTTTTC TTTTTC TTTTTC -TTTTTC TTTTTC TTTT

       2417 CTTGAGCATC


Statistics
Matches: 27,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
   5    4  0.15
   6   17  0.63
   7    6  0.22

ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85


Consensus pattern (6 bp):   
TTTTTC

Found at i:2405 original size:13 final size:12

Alignment explanation


    Indices: 2383--2416  Score: 52
    Period size: 13  Copynumber: 2.8  Consensus size: 12

       2373 ATGCTCTATA

                        
       2383 TTTTTCTTTTTC
          1 TTTTTCTTTTTC

                         
       2395 TTTTTCATTTTTC
          1 TTTTTC-TTTTTC

                      
       2408 TTTTT-TTTT
          1 TTTTTCTTTT

       2417 CTTGAGCATC


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  11    4  0.19
  12    6  0.29
  13   11  0.52

ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85


Consensus pattern (12 bp):   
TTTTTCTTTTTC
Done.