Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001151.1 Kokia drynarioides strain JFW-HI SEQ_112457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7085
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:3321 original size:14 final size:14

Alignment explanation


    Indices: 3302--3338  Score: 56
    Period size: 14  Copynumber: 2.6  Consensus size: 14

       3292 TCGTTTCACT

                       *  
       3302 AAAAATAATTTTAA
          1 AAAAATAATTTCAA

                          
       3316 AAAAATAATTTCAA
          1 AAAAATAATTTCAA

                     
       3330 AAATAATAA
          1 AAA-AATAA

       3339 AAAATAATTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  14   16  0.76
  15    5  0.24

ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30


Consensus pattern (14 bp):   
AAAAATAATTTCAA
Done.