Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011510.1 Kokia drynarioides strain JFW-HI SEQ_126495, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7580
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:1037 original size:16 final size:17

Alignment explanation


    Indices: 1018--1061  Score: 54
    Period size: 18  Copynumber: 2.6  Consensus size: 17

       1008 GCATCACCAA

                        *    
       1018 AGAACAACTCT-TATTC
          1 AGAACAACTCTACATTC

                             *
       1034 AGAACAACTTCTACATTG
          1 AGAACAAC-TCTACATTC

                      
       1052 AGAACAACTC
          1 AGAACAACTC

       1062 ACTTTGGAAC


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  16    8  0.33
  17    5  0.21
  18   11  0.46

ACGTcount: A:0.41, C:0.25, G:0.09, T:0.25


Consensus pattern (17 bp):   
AGAACAACTCTACATTC
Done.