Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001152.1 Kokia drynarioides strain JFW-HI SEQ_112463, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 919

Length: 1533
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35


Found at i:337 original size:79 final size:79

Alignment explanation


    Indices: 233--397  Score: 251
    Period size: 79  Copynumber: 2.1  Consensus size: 79

        223 TTCATTAAGG

                    *            *       **                          *    *  
        233 AGAAA-TATCATGCCTTTTCAGCTACATCGGATCCTAATGAAGAGACACGACTCATTGACTTTCC
          1 AGAAATTACCATGCCTTTTCAACTACATCAAATCCTAATGAAGAGACACGACTCATTAACTTCCC

                          
        297 TACAAGAGTTAAAA
         66 TACAAGAGTTAAAA

            *                  *                                             
        311 TGAAATTACCATGCCTTTTTAACTACATCAAATCCTAATGAAGAGACACGACTCATTAACTTCCC
          1 AGAAATTACCATGCCTTTTCAACTACATCAAATCCTAATGAAGAGACACGACTCATTAACTTCCC

                          
        376 TACAAGAGTTAAAA
         66 TACAAGAGTTAAAA

                    
        390 AGAAATTA
          1 AGAAATTA

        398 GTGTTTGTAT


Statistics
Matches: 77,  Mismatches: 9, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
  78    4  0.05
  79   73  0.95

ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27


Consensus pattern (79 bp):   
AGAAATTACCATGCCTTTTCAACTACATCAAATCCTAATGAAGAGACACGACTCATTAACTTCCC
TACAAGAGTTAAAA
Done.