Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011522.1 Kokia drynarioides strain JFW-HI SEQ_126508, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2293
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:2099 original size:20 final size:21

Alignment explanation


    Indices: 2074--2113  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       2064 ATAAAAATAA

                      *          
       2074 AATTGAATTTTATT-GGTTTC
          1 AATTGAATTTGATTAGGTTTC

                                
       2094 AATTGAATTTGATTAGGTTT
          1 AATTGAATTTGATTAGGTTT

       2114 GGATAATAGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20   13  0.72
  21    5  0.28

ACGTcount: A:0.28, C:0.03, G:0.17, T:0.53


Consensus pattern (21 bp):   
AATTGAATTTGATTAGGTTTC
Done.