genome.fa.s11523.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011523.1 Kokia drynarioides strain JFW-HI SEQ_126509, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90894

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1017--1130	61	1.9	61	83	3	151	49	8	2	39	1.48
13528--13563	18	2.0	18	94	0	63	41	22	25	11	1.86
19594--19662	24	2.9	24	93	0	120	24	10	7	57	1.56
22072--22121	23	2.2	23	92	0	82	12	30	24	34	1.91
31551--31581	2	15.5	2	100	0	62	51	48	0	0	1.00
39616--39683	29	2.4	28	80	11	75	60	4	1	33	1.26
65575--65610	13	2.8	13	91	0	54	36	0	22	41	1.54
68855--69078	30	7.7	30	74	11	148	32	9	27	30	1.89
68855--68991	59	2.4	57	80	11	154	30	9	29	30	1.89
68908--69075	59	2.9	60	77	7	166	32	8	27	30	1.87
69057--69475	30	14.3	29	73	12	220	38	2	24	34	1.68
69057--69491	58	7.5	57	78	11	327	38	2	24	34	1.68
69118--69491	29	12.8	28	72	14	195	39	1	23	34	1.65
71257--71353	17	5.9	17	74	20	82	54	9	1	35	1.39
71271--71330	6	10.2	6	73	8	52	56	5	0	38	1.21
71252--71330	34	2.3	35	84	6	99	55	6	1	36	1.33
71271--71330	17	3.4	18	88	9	88	56	5	0	38	1.21
71275--71348	29	2.6	28	86	2	94	58	8	0	33	1.28
71765--72203	49	9.0	48	76	9	379	15	25	20	38	1.92
71756--72190	98	4.4	98	84	5	583	16	25	20	37	1.93
71787--72200	147	2.8	145	81	7	444	15	25	20	37	1.92
83206--83427	30	7.6	30	72	14	137	36	10	24	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83202--83400	58	3.4	57	73	15	165	35	11	25	27	1.90
83405--83823	59	7.1	57	78	9	292	38	4	24	33	1.75
83376--83847	29	16.1	30	72	14	242	37	4	24	33	1.75
83562--83847	30	9.7	29	73	13	130	38	3	24	33	1.71
85267--85353	34	2.5	33	75	3	84	52	6	1	39	1.36
85314--85369	22	2.5	23	85	2	78	57	7	0	35	1.26
89702--89891	97	1.9	98	84	1	256	38	15	14	30	1.88
90186--90370	29	6.3	30	80	5	182	36	4	27	31	1.76
90227--90370	59	2.5	59	87	3	193	36	4	26	32	1.76
90227--90392	59	2.8	58	84	5	156	36	3	27	32	1.74

Tables:   1

The End!