Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011524.1 Kokia drynarioides strain JFW-HI SEQ_126510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50941
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Warning! 12 characters in sequence are not A, C, G, or T
Found at i:3147 original size:19 final size:18
Alignment explanation
Indices: 3103--3154 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
3093 AAAAAATTAA
*
3103 ATTTTAGAATTTATATAAAT
1 ATTTT-GAATTT-TAAAAAT
*
3123 ACTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAA-T
3142 ATTTTGTAATTTT
1 ATTTTG-AATTTT
3155 TGTTGAGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 5 0.19
19 12 0.44
20 10 0.37
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (18 bp):
ATTTTGAATTTTAAAAAT
Found at i:8112 original size:24 final size:24
Alignment explanation
Indices: 8067--8112 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
8057 TGACTGTCAG
* *
8067 ACATACGAAAACAATTTTCCATTA
1 ACATACGAAAACAATATACCATTA
8091 ACATACGAAACACAA-ATACCAT
1 ACATACGAAA-ACAATATACCAT
8113 ATTCCAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.50, C:0.24, G:0.04, T:0.22
Consensus pattern (24 bp):
ACATACGAAAACAATATACCATTA
Found at i:9882 original size:158 final size:158
Alignment explanation
Indices: 9605--9897 Score: 433
Period size: 158 Copynumber: 1.9 Consensus size: 158
9595 GGTGTTGGTT
* * * * *
9605 TTAGATGTCCTACTGATGGTTGAGATCCGACATTGATTGTGGATTCTCCACAGCTCGTATGAGCA
1 TTAGATGTCCTACCGATGGATGAGATCCGACATTGATTGCGGATTCTCCACAACTCGTATAAGCA
* * * * *
9670 GCATCGTGTAGCCTAACATCTCGACCCACAACTCTTGTGAGCAGGCCTGCTTCACAGTTCGTGTG
66 GCATCGTGTAACCTAACATCTCGACCCACAACTCGTGTGAGCAGGCCTACTTCACAGCTCATGTG
9735 AGCATCACAAGTTATATCGATGCTAGTC
131 AGCATCACAAGTTATATCGATGCTAGTC
* * *
9763 TTAGATGTCTTACCGATGGATGAGATCCGACATTTATTGCGGATTCTCCACAACTCGTGTAAGCA
1 TTAGATGTCCTACCGATGGATGAGATCCGACATTGATTGCGGATTCTCCACAACTCGTATAAGCA
* * * *
9828 GCATCGTGTAACCTAACATCTTGACCCACAACTCGTGTGAGTAGGCTTATTTCACAGCTCATGTG
66 GCATCGTGTAACCTAACATCTCGACCCACAACTCGTGTGAGCAGGCCTACTTCACAGCTCATGTG
9893 AGCAT
131 AGCAT
9898 TACATGATAC
Statistics
Matches: 118, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
158 118 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (158 bp):
TTAGATGTCCTACCGATGGATGAGATCCGACATTGATTGCGGATTCTCCACAACTCGTATAAGCA
GCATCGTGTAACCTAACATCTCGACCCACAACTCGTGTGAGCAGGCCTACTTCACAGCTCATGTG
AGCATCACAAGTTATATCGATGCTAGTC
Found at i:11030 original size:37 final size:37
Alignment explanation
Indices: 10958--11039 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
10948 ATCCACCCTC
* *
10958 CACACCACAATGGGTTATGATAGGCTCGTCTACCTTA
1 CACACCACAATAGGTTATGATAGGCTAGTCTACCTTA
* * *
10995 CATACCACAATAGGTTATGGTAGGCCTATTC-ACCTTA
1 CACACCACAATAGGTTATGATAGG-CTAGTCTACCTTA
11032 CACACCAC
1 CACACCAC
11040 GATAATGAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 34 0.89
38 4 0.11
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (37 bp):
CACACCACAATAGGTTATGATAGGCTAGTCTACCTTA
Found at i:12175 original size:8 final size:8
Alignment explanation
Indices: 12162--12190 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
12152 CGAATATTAC
12162 AAAAAAA-
1 AAAAAAAG
12169 AAAAAAAG
1 AAAAAAAG
12177 AAAAAAAG
1 AAAAAAAG
12185 AAAAAA
1 AAAAAA
12191 TGAATACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:15337 original size:15 final size:14
Alignment explanation
Indices: 15298--15337 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 14
15288 TTGAAAAATA
15298 TTTATATTGTATTAT
1 TTTATATT-TATTAT
15313 TTTAGTATTTATTATT
1 TTTA-TATTTATTA-T
15329 TTTATATTT
1 TTTATATTT
15338 TTTTATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (14 bp):
TTTATATTTATTAT
Found at i:16904 original size:21 final size:21
Alignment explanation
Indices: 16880--16944 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
16870 GGCAAAGAAA
16880 CAAGCACCTGCAACCATATCT
1 CAAGCACCTGCAACCATATCT
* * * * * * *
16901 CAAGTATCTTC-TCCAAAGACA
1 CAAGCACCTGCAACCATA-TCT
16922 CAAGCACCTGCAACCATATCT
1 CAAGCACCTGCAACCATATCT
16943 CA
1 CA
16945 GGTATCTTCT
Statistics
Matches: 28, Mismatches: 14, Indels: 4
0.61 0.30 0.09
Matches are distributed among these distances:
20 4 0.14
21 20 0.71
22 4 0.14
ACGTcount: A:0.35, C:0.35, G:0.09, T:0.20
Consensus pattern (21 bp):
CAAGCACCTGCAACCATATCT
Found at i:16931 original size:42 final size:42
Alignment explanation
Indices: 16872--16957 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
16862 GTAAACTTGG
16872 CAAAGAAACAAGCACCTGCAACCATATCTCAAGTATCTTCTC
1 CAAAGAAACAAGCACCTGCAACCATATCTCAAGTATCTTCTC
* *
16914 CAAAGACACAAGCACCTGCAACCATATCTCAGGTATCTTCTC
1 CAAAGAAACAAGCACCTGCAACCATATCTCAAGTATCTTCTC
16956 CA
1 CA
16958 TCTTTTCAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.33, G:0.10, T:0.21
Consensus pattern (42 bp):
CAAAGAAACAAGCACCTGCAACCATATCTCAAGTATCTTCTC
Found at i:21948 original size:198 final size:199
Alignment explanation
Indices: 21561--21947 Score: 744
Period size: 198 Copynumber: 2.0 Consensus size: 199
21551 TAAAGGCTCC
21561 TATTTTCAATATCAACTGGATTGTGAATACTAAGGGCAATTAGGGTTTCTAGAAAGCTAATGATT
1 TATTTTCAATATCAACTGGATTGTGAATACTAAGGGCAATTAGGGTTTCTAGAAAGCTAATGATT
21626 TTATTTATTATTGTATTTATTTTTCTTTATTAGTCTTTATTATTATTATTTTTCGGTTAGGCTTT
66 TTATTTATTATTGTATTTATTTTTCTTTATTAGTCTTTATTATTATTATTTTTCGGTTAGGCTTT
21691 TTTTACTGTAATTTTCTCCTATTTTATATTAAATGAATTCAACTGGTTATG-TTTTTTTTTGCTA
131 TTTTACTGTAATTTTCTCCTATTTTATATTAAATGAATTCAACTGGTTATGTTTTTTTTTTGCTA
21755 TAAT
196 TAAT
21759 TATTTTCAATATCAACTGGATTGTGAATACTAAGGGCAATTAGGGTTTCTAGAAAGCTAATGATT
1 TATTTTCAATATCAACTGGATTGTGAATACTAAGGGCAATTAGGGTTTCTAGAAAGCTAATGATT
21824 TTATTTATTATTGTATTTATTTTTCTTTATTAGTCTTTATT-TTATT-TTTTTCGGTTAGGCTTT
66 TTATTTATTATTGTATTTATTTTTCTTTATTAGTCTTTATTATTATTATTTTTCGGTTAGGCTTT
*
21887 TTTTTCTGTAATTTTCTCCTATTTTATATTAAATGAATTCAACTGGTTATGTTTTTTTTTT
131 TTTTACTGTAATTTTCTCCTATTTTATATTAAATGAATTCAACTGGTTATGTTTTTTTTTT
21948 TTTTGCTATA
Statistics
Matches: 187, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
196 67 0.36
197 14 0.07
198 106 0.57
ACGTcount: A:0.25, C:0.09, G:0.13, T:0.53
Consensus pattern (199 bp):
TATTTTCAATATCAACTGGATTGTGAATACTAAGGGCAATTAGGGTTTCTAGAAAGCTAATGATT
TTATTTATTATTGTATTTATTTTTCTTTATTAGTCTTTATTATTATTATTTTTCGGTTAGGCTTT
TTTTACTGTAATTTTCTCCTATTTTATATTAAATGAATTCAACTGGTTATGTTTTTTTTTTGCTA
TAAT
Found at i:22115 original size:28 final size:27
Alignment explanation
Indices: 22083--22143 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 27
22073 ATTATTTACT
*
22083 ATTTTTTATT-AAATTATATTTAATAATA
1 ATTTTTTATTAAAATT-TA-ATAATAATA
22111 A--TTTTATTAAAATTTAATAATAATA
1 ATTTTTTATTAAAATTTAATAATAATA
*
22136 ATTATTTA
1 ATTTTTTA
22144 CCTAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
25 9 0.32
26 9 0.32
27 9 0.32
28 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
ATTTTTTATTAAAATTTAATAATAATA
Found at i:22120 original size:48 final size:46
Alignment explanation
Indices: 22014--22121 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 46
22004 AATTATATTA
*
22014 AAAATATTATTAAATTATATATTATTTTATTAAATTGTATTTAATT
1 AAAATATTATTAAATTATATATTATTTTATTAAATTATATTTAATT
*
22060 AAAATATAATTAAATTATTTACTATT-TTTTATTAAATTATATTTAA-T
1 AAAATATTATTAAATTA--TA-TATTATTTTATTAAATTATATTTAATT
*
22107 AATAATTTTATTAAA
1 AA-AATATTATTAAA
22122 ATTTAATAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
46 16 0.30
47 3 0.06
48 31 0.57
49 4 0.07
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (46 bp):
AAAATATTATTAAATTATATATTATTTTATTAAATTATATTTAATT
Found at i:22137 original size:25 final size:26
Alignment explanation
Indices: 21957--22138 Score: 74
Period size: 26 Copynumber: 6.8 Consensus size: 26
21947 TTTTTGCTAT
* *
21957 AATTATATTTAGTAATAATTTTATTAA
1 AATTATATATAATAATAATTTTATT-A
* *
21984 AATTTAATAACAATAATAATAATTATATTA
1 AA-TT-AT-A-TATAATAATAATTTTATTA
*
22014 AA-AATATTATTAAATTATATATTATTTTATTA
1 AATTATA-TA-T-AA-TA-ATA--ATTTTATTA
* * * *
22046 AATTGTATTTAATTAA-AATATAATTA
1 AATTATATATAA-TAATAATTTTATTA
* *
22072 AATTAT-T-TACT-AT-TTTTTATTA
1 AATTATATATAATAATAATTTTATTA
*
22094 AATTATATTTAATAATAATTTTATTAA
1 AATTATATATAATAATAATTTTATT-A
22121 AATT-TA-ATAATAATAATT
1 AATTATATATAATAATAATT
22139 ATTTACCTAA
Statistics
Matches: 117, Mismatches: 21, Indels: 36
0.67 0.12 0.21
Matches are distributed among these distances:
22 13 0.11
23 2 0.02
24 5 0.04
25 14 0.12
26 23 0.20
27 10 0.09
28 5 0.04
29 5 0.04
30 12 0.10
31 15 0.13
32 11 0.09
33 2 0.02
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (26 bp):
AATTATATATAATAATAATTTTATTA
Found at i:25617 original size:20 final size:20
Alignment explanation
Indices: 25576--25629 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
25566 ACAAAGGTTT
* **
25576 ATTTAAAATAAAAATATTAA
1 ATTTAAATTAAAAATAAAAA
25596 ATTTAAATTAAAAATAAAAA
1 ATTTAAATTAAAAATAAAAA
25616 ATTGTAATATTAAA
1 ATT-TAA-ATTAAA
25630 TATTTAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 20 0.69
21 3 0.10
22 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (20 bp):
ATTTAAATTAAAAATAAAAA
Found at i:25833 original size:39 final size:43
Alignment explanation
Indices: 25758--25839 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 43
25748 TATTATATAT
*
25758 TATATATTATATTAATTAAAAATATAAAAAATCATATATTTAA
1 TATATATTATATTAATTAAAAATATAAAAAATCATATAATTAA
* **
25801 TATATA-TATATT-TTTAAAAAT-TCTAAAA-CATATAATTAA
1 TATATATTATATTAATTAAAAATATAAAAAATCATATAATTAA
25840 AAGTTTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
39 10 0.29
40 5 0.14
41 8 0.23
42 6 0.17
43 6 0.17
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (43 bp):
TATATATTATATTAATTAAAAATATAAAAAATCATATAATTAA
Found at i:26121 original size:8 final size:7
Alignment explanation
Indices: 26105--26163 Score: 50
Period size: 7 Copynumber: 8.4 Consensus size: 7
26095 AAAAGCGTTT
26105 TTTAATA
1 TTTAATA
26112 TTTAAATA
1 TTT-AATA
26120 TTTAATA
1 TTTAATA
*
26127 TTATAATT
1 TT-TAATA
* *
26135 TTTTATT
1 TTTAATA
*
26142 TTTTA-A
1 TTTAATA
26148 TTTAA-A
1 TTTAATA
26154 TTTAATA
1 TTTAATA
26161 TTT
1 TTT
26164 TTATTTTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 10 0.22
7 22 0.49
8 13 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (7 bp):
TTTAATA
Found at i:26166 original size:20 final size:20
Alignment explanation
Indices: 26105--26174 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
26095 AAAAGCGTTT
*
26105 TTTAATATTTAA-ATATTTAA
1 TTTAA-ATTTAATATTTTTAA
**
26125 TATTATAATTTTTTATTTTTTAA
1 T-TTA-AATTTAATA-TTTTTAA
*
26148 TTTAAATTTAATATTTTTAT
1 TTTAAATTTAATATTTTTAA
26168 TTTAAAT
1 TTTAAAT
26175 AAATCTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
20 14 0.35
21 14 0.35
22 5 0.12
23 7 0.17
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTAAATTTAATATTTTTAA
Found at i:26829 original size:22 final size:22
Alignment explanation
Indices: 26803--26845 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
26793 TCTAGCATTT
26803 TAAAATGTTAATATTTTAATTC
1 TAAAATGTTAATATTTTAATTC
*
26825 TAAAATGTTATTATTTTAATT
1 TAAAATGTTAATATTTTAATT
26846 ATTTGGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (22 bp):
TAAAATGTTAATATTTTAATTC
Found at i:30543 original size:3 final size:3
Alignment explanation
Indices: 30535--30569 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
30525 ATTATTCATT
* *
30535 AAC AAC AAC AAC AAC AAT AAC AAC AAC ACC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
30570 AATGTTTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.66, C:0.31, G:0.00, T:0.03
Consensus pattern (3 bp):
AAC
Found at i:31832 original size:31 final size:31
Alignment explanation
Indices: 31794--31861 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
31784 TTGGTCATTA
* *
31794 AACTATTCGAAAGTTTTTATTTAAGTTATTG
1 AACTATTCAAAAGTGTTTATTTAAGTTATTG
31825 AACTATTCAAAAGTGTTTATTTAAGTTATTG
1 AACTATTCAAAAGTGTTTATTTAAGTTATTG
*
31856 AGCTAT
1 AACTAT
31862 CAAGTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.46
Consensus pattern (31 bp):
AACTATTCAAAAGTGTTTATTTAAGTTATTG
Found at i:33608 original size:29 final size:29
Alignment explanation
Indices: 33551--33773 Score: 226
Period size: 29 Copynumber: 7.7 Consensus size: 29
33541 AAATCGAGGT
* * * *
33551 TAAAATGAT-ATTTTTGGGAGTTCGA-GG
1 TAAAATGGTAATTTTTGGAAATTCAAGGG
* * *
33578 TAAAATGGTAAATTTTGGACATTCGAGGG
1 TAAAATGGTAATTTTTGGAAATTCAAGGG
*
33607 TAAAATGGTAATTTTTGGATAATTCAAGGT
1 TAAAATGGTAATTTTTGGA-AATTCAAGGG
*
33637 TAAAAATGG-AATTTTTGAAAATTCAAGGG
1 T-AAAATGGTAATTTTTGGAAATTCAAGGG
33666 TAAAAATGG-AATTTTTGGAAATTCAAGGG
1 T-AAAATGGTAATTTTTGGAAATTCAAGGG
* * * *
33695 TAAAATGGTAATTTTCGTAAAGTT-TAGAGT
1 TAAAATGGTAATTTTTGGAAA-TTCAAG-GG
33725 TAAAAAT-GTAATTTTTGGAAATTCAAGGG
1 T-AAAATGGTAATTTTTGGAAATTCAAGGG
33754 TAAAATGGTAA-TTTTGGAAA
1 TAAAATGGTAATTTTTGGAAA
33774 GTTTGAGGTC
Statistics
Matches: 166, Mismatches: 20, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
27 8 0.05
28 33 0.20
29 78 0.47
30 35 0.21
31 12 0.07
ACGTcount: A:0.39, C:0.04, G:0.23, T:0.35
Consensus pattern (29 bp):
TAAAATGGTAATTTTTGGAAATTCAAGGG
Found at i:33666 original size:59 final size:59
Alignment explanation
Indices: 33576--33800 Score: 239
Period size: 59 Copynumber: 3.8 Consensus size: 59
33566 GGGAGTTCGA
* * * *
33576 GGTAAAATGGTAAATTTTGGACATTCGAGGGT-AAAATGGTAATTTTTGGATAATTCAAG
1 GGTAAAATGGTAATTTTTGAAAATTCAAGGGTAAAAATGGTAATTTTTGGA-AATTCAAG
*
33635 GTTAAAAATGG-AATTTTTGAAAATTCAAGGGTAAAAATGG-AATTTTTGGAAATTCAAG
1 GGT-AAAATGGTAATTTTTGAAAATTCAAGGGTAAAAATGGTAATTTTTGGAAATTCAAG
* * * *
33693 GGTAAAATGGTAATTTTCGTAAAGTT-TAGAGTTAAAAAT-GTAATTTTTGGAAATTCAAG
1 GGTAAAATGGTAATTTTTG-AAAATTCAAG-GGTAAAAATGGTAATTTTTGGAAATTCAAG
* * **
33752 GGTAAAATGGTAATTTTGGAAAGTTTGA-GGTCAAAAATGG-AATTTTTGG
1 GGTAAAATGGTAATTTTTGAAAATTCAAGGGT-AAAAATGGTAATTTTTGG
33801 GTCAAAATAT
Statistics
Matches: 144, Mismatches: 13, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
57 9 0.06
58 41 0.28
59 80 0.56
60 14 0.10
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.35
Consensus pattern (59 bp):
GGTAAAATGGTAATTTTTGAAAATTCAAGGGTAAAAATGGTAATTTTTGGAAATTCAAG
Found at i:33668 original size:88 final size:88
Alignment explanation
Indices: 33576--33773 Score: 269
Period size: 88 Copynumber: 2.3 Consensus size: 88
33566 GGGAGTTCGA
* * *
33576 GGTAAAATGGTAAATTTTGGACATTCGAGGGTAAAATGGTAATTTTTGGATAA-TTCAAG-GTTA
1 GGTAAAATGGTAAATTTTGGAAATTCAAGGGTAAAATGGTAATTTTCGGA-AAGTT-AAGAGTTA
33639 AAAATGGAATTTTTGAAAATTCAAG
64 AAAATGGAATTTTTGAAAATTCAAG
* * *
33664 GGTAAAAATGG-AATTTTTGGAAATTCAAGGGTAAAATGGTAATTTTCGTAAAGTTTAGAGTTAA
1 GGT-AAAATGGTAAATTTTGGAAATTCAAGGGTAAAATGGTAATTTTCGGAAAGTTAAGAGTTAA
* *
33728 AAATGTAATTTTTGGAAATTCAAG
65 AAATGGAATTTTTGAAAATTCAAG
33752 GGTAAAATGGT-AATTTTGGAAA
1 GGTAAAATGGTAAATTTTGGAAA
33774 GTTTGAGGTC
Statistics
Matches: 97, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
87 21 0.22
88 69 0.71
89 7 0.07
ACGTcount: A:0.39, C:0.04, G:0.23, T:0.34
Consensus pattern (88 bp):
GGTAAAATGGTAAATTTTGGAAATTCAAGGGTAAAATGGTAATTTTCGGAAAGTTAAGAGTTAAA
AATGGAATTTTTGAAAATTCAAG
Found at i:33787 original size:29 final size:27
Alignment explanation
Indices: 33544--33797 Score: 165
Period size: 29 Copynumber: 8.8 Consensus size: 27
33534 CAAAAAAAAA
* * * *
33544 TCGAGGTTAAAATGATATTTTTGGGAGT
1 TCGAGG-TAAAATGGTAATTTTGGAAAT
*
33572 TCGAGGTAAAATGGTAAATTTTGGACAT
1 TCGAGGTAAAATGGT-AATTTTGGAAAT
33600 TCGAGGGTAAAATGGTAATTTTTGGATAAT
1 TCGA-GGTAAAATGGTAA-TTTTGGA-AAT
* *
33630 TCAAGGTTAAAAATGG-AATTTTTGAAAAT
1 TCGAGG-T-AAAATGGTAA-TTTTGGAAAT
*
33659 TCAAGGGTAAAAATGG-AATTTTTGGAAAT
1 TCGA-GGT-AAAATGGTAA-TTTTGGAAAT
* *
33688 TCAAGGGTAAAATGGTAATTTTCGTAAAGTT
1 TCGA-GGTAAAATGGTAATTTT-GGAAA--T
* *
33719 TAGAGTTAAAAAT-GTAATTTTTGGAAAT
1 TCGAGGT-AAAATGGTAA-TTTTGGAAAT
*
33747 TCAAGGGTAAAATGGTAATTTTGGAAAGT
1 TCGA-GGTAAAATGGTAATTTTGGAAA-T
*
33776 TTGAGGTCAAAAATGG-AATTTT
1 TCGAGGT--AAAATGGTAATTTT
33798 TGGGTCAAAA
Statistics
Matches: 189, Mismatches: 19, Indels: 35
0.78 0.08 0.14
Matches are distributed among these distances:
27 8 0.04
28 51 0.27
29 77 0.41
30 34 0.18
31 19 0.10
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (27 bp):
TCGAGGTAAAATGGTAATTTTGGAAAT
Found at i:33817 original size:20 final size:21
Alignment explanation
Indices: 33775--33820 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
33765 TTTTGGAAAG
33775 TTTGAGGTCAAAAATGGAATT
1 TTTGAGGTCAAAAATGGAATT
*
33796 TTTG-GGTCAAAATAT-GATTT
1 TTTGAGGTCAAAA-ATGGAATT
33816 TTTGA
1 TTTGA
33821 AAATTCGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.41
Consensus pattern (21 bp):
TTTGAGGTCAAAAATGGAATT
Found at i:35008 original size:3 final size:3
Alignment explanation
Indices: 35000--35045 Score: 83
Period size: 3 Copynumber: 15.0 Consensus size: 3
34990 ACTTTTCCTT
35000 TTA TTA TTA TTA TTA TTA TTA TTAA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA
35046 ATGTCACTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:35030 original size:22 final size:22
Alignment explanation
Indices: 35002--35047 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
34992 TTTTCCTTTT
35002 ATTATTATTATTATTATTATTA
1 ATTATTATTATTATTATTATTA
35024 ATTATTATTATTATTATTATTA
1 ATTATTATTATTATTATTATTA
35046 AT
1 AT
35048 GTCACTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTATTATTATTATTATTATTA
Found at i:35056 original size:22 final size:21
Alignment explanation
Indices: 35008--35071 Score: 74
Period size: 22 Copynumber: 3.0 Consensus size: 21
34998 TTTTATTATT
*
35008 ATTATTATTATTATTAATTATT
1 ATTATTATTATTATTAA-TATC
*
35030 ATTATTATTATTATTAATGTC
1 ATTATTATTATTATTAATATC
* *
35051 ACTTATTACTATAATTAATAT
1 A-TTATTATTATTATTAATAT
35072 GAATTGAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
21 3 0.08
22 33 0.92
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTATTATTATTATTAATATC
Found at i:35673 original size:6 final size:6
Alignment explanation
Indices: 35662--35745 Score: 86
Period size: 6 Copynumber: 14.7 Consensus size: 6
35652 GCCTTTAAGA
* * * *
35662 TAAATT TAAATT TAAA-A TAAATT TAAAAT TAAA-A TGAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
* *
35708 TAAA-A TAAATT TAAATT TAAATT TAAA-G TAAATT TAAA
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAA
35746 AATAAATTAA
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
5 15 0.24
6 48 0.76
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (6 bp):
TAAATT
Found at i:35688 original size:23 final size:22
Alignment explanation
Indices: 35662--35753 Score: 85
Period size: 23 Copynumber: 4.0 Consensus size: 22
35652 GCCTTTAAGA
35662 TAAATTTAAATTTAAAATAAATT
1 TAAA-TTAAATTTAAAATAAATT
* * **
35685 TAAAATTAAAATGAATTTAAATT
1 T-AAATTAAATTTAAAATAAATT
* *
35708 TAAAATAAATTTAAATTTAAATT
1 TAAATTAAATTTAAA-ATAAATT
*
35731 TAAAGTAAATTTAAAAATAAATT
1 TAAATTAAATTT-AAAATAAATT
35754 AAAGCTTGAG
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
22 10 0.18
23 40 0.71
24 6 0.11
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
TAAATTAAATTTAAAATAAATT
Found at i:35756 original size:17 final size:17
Alignment explanation
Indices: 35655--35753 Score: 128
Period size: 17 Copynumber: 5.8 Consensus size: 17
35645 TAATTGGGCC
*
35655 TTTAAGATAAATTTAAA
1 TTTAAAATAAATTTAAA
35672 TTTAAAATAAATTTAAA
1 TTTAAAATAAATTTAAA
* *
35689 ATTAAAATGAATTTAAA
1 TTTAAAATAAATTTAAA
35706 TTTAAAATAAATTTAAA
1 TTTAAAATAAATTTAAA
* *
35723 TTTAAATTTAAA-GTAAA
1 TTTAAA-ATAAATTTAAA
35740 TTTAAAAATAAATT
1 TTT-AAAATAAATT
35754 AAAGCTTGAG
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
17 63 0.90
18 7 0.10
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
TTTAAAATAAATTTAAA
Found at i:36549 original size:209 final size:210
Alignment explanation
Indices: 36129--36588 Score: 568
Period size: 209 Copynumber: 2.2 Consensus size: 210
36119 TTTTACTAAA
** * * * * *
36129 AAGACGGATTTGGTTCACTTCTCTGCGTCTCGTCAAGAATATAACCATTTTATTACTTCAACCTG
1 AAGACGGATTTGGTTCACTTCTCTGTATCTCATCAGGAAGATAACCACTTTATTACTTCAACATG
** * ** *
36194 CTTCTCTGTATCTCATTGGGAAGCTGGGGTTTGAAGTTTCGCTTGCATCGAGTTTCAGTTTCATT
66 CTTCTCTGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATCGAGTCTCAGTTTCATT
* * *
36259 GATTTGGTCTACTTCTCAGTATCTCATCAAAAAGATGATCGCATCACTTGTTCTGATCCACTTCT
131 GATTTGGTCTACTTCTCAGTATCTCATCAAAAAGATAACCGCATCACTTGTTCTAATCCACTTCT
*
36324 TCGTGTCTCATCAGG
196 TCGTATCTCATCAGG
* * * * *
36339 AAGACGGATCTGGTTTACTTCTCTGTATCTCATCAGGAAGGTAACCACTTTATTGCTTCGACATG
1 AAGACGGATTTGGTTCACTTCTCTGTATCTCATCAGGAAGATAACCACTTTATTACTTCAACATG
* *
36404 CTTCT-TAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTT-GCTCACTTCGAGTCT-GGTTTCA
66 CTTCTCT-GTATCTCATCAGGAAGCTGGGGTTCGAAG-TTTCGCTCACATCGAGTCTCAGTTTCA
* * * *
36466 TTGATTTGGTCTACTTCTCAGTATCTCATGAAGAAGATAACCGCATCGCTTGTT-TCAATCCGCT
129 TTGATTTGGTCTACTTCTCAGTATCTCATCAAAAAGATAACCGCATCACTTGTTCT-AATCCACT
*
36530 TCTTTGTATCTCATCAGG
193 TCTTCGTATCTCATCAGG
* * * *
36548 AAGACGAATTTGGTCCACTTCTCAGTTTCTCATCAGGAAGA
1 AAGACGGATTTGGTTCACTTCTCTGTATCTCATCAGGAAGA
36589 CGAATTTGGT
Statistics
Matches: 211, Mismatches: 36, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
208 1 0.00
209 112 0.53
210 95 0.45
211 3 0.01
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (210 bp):
AAGACGGATTTGGTTCACTTCTCTGTATCTCATCAGGAAGATAACCACTTTATTACTTCAACATG
CTTCTCTGTATCTCATCAGGAAGCTGGGGTTCGAAGTTTCGCTCACATCGAGTCTCAGTTTCATT
GATTTGGTCTACTTCTCAGTATCTCATCAAAAAGATAACCGCATCACTTGTTCTAATCCACTTCT
TCGTATCTCATCAGG
Found at i:36579 original size:37 final size:37
Alignment explanation
Indices: 36535--36624 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 37
36525 CCGCTTCTTT
36535 GTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
1 GTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
* *
36572 GTTTCTCATCAGGAAGACGAATTTGGTCCACTTCTTA
1 GTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
* *
36609 GTATCTTATCAAGAAG
1 GTATCTCATCAGGAAG
36625 CTAACCATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (37 bp):
GTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
Found at i:36805 original size:238 final size:240
Alignment explanation
Indices: 36315--36825 Score: 634
Period size: 246 Copynumber: 2.1 Consensus size: 240
36305 CTTGTTCTGA
* * ** *
36315 TCCACTTCTTC-GTGTCTCATCAGGAAGACGGATCTGGTTTACTTCTCTGTATCTCATCAGGAAG
1 TCCACTTC-TCAGTATCTCATCAGGAAGACGAATCTGGTCCACTTCTCTGTATCTCATCAAGAAG
* * * * * *
36379 GTAACCACTTTATTGCTTCGACATGCTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTT
65 CTAACCACTTTATTGCTTCGACACGCATCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTC
* * *
36444 GCTCACTTCGAGTCTGGTTTCATTGATTTGGTCTACTTCTCAGTATCTCATGAAGAAGATAACCG
130 ACTCACTTCGA----GG--TCATTGATTTGGTATACTTCTCAGTATCTCATCAAGAAGATAACCG
* * * *
36509 CATCGCTTGTTTCAATCCGCTTCTTTGTATCTCATCAGGAAGACGAATTTGG
189 CATCACTTATTTCAATCCGCTTCTCTATATCTCATCAGGAAGACGAATTTGG
* * *
36561 TCCACTTCTCAGTTTCTCATCAGGAAGACGAATTTGGTCCACTTCT-TAGTATCTTATCAAGAAG
1 TCCACTTCTCAGTATCTCATCAGGAAGACGAATCTGGTCCACTTCTCT-GTATCTCATCAAGAAG
* * * *
36625 CTAACCATTTTCTTGCTTTGACCCGCATCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTC
65 CTAACCACTTTATTGCTTCGACACGCATCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTC
* * * * * *
36690 ACTCACTTTGA-G-CATTTATTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCAC
130 ACTCACTTCGAGGTCATTGATTTGGTATACTTCTCAGTATCTCATCAAGAAGATAACCGCATCAC
*
36753 TTATTTCAATCTGCTTCTCTATATCTCATCAGGAAGACGAATTTGG
195 TTATTTCAATCCGCTTCTCTATATCTCATCAGGAAGACGAATTTGG
36799 TCCACTTCTCAGTATCTCATCAGGAAG
1 TCCACTTCTCAGTATCTCATCAGGAAG
36826 CTAATCATTT
Statistics
Matches: 231, Mismatches: 32, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
238 111 0.48
241 1 0.00
245 3 0.01
246 116 0.50
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (240 bp):
TCCACTTCTCAGTATCTCATCAGGAAGACGAATCTGGTCCACTTCTCTGTATCTCATCAAGAAGC
TAACCACTTTATTGCTTCGACACGCATCTCAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTCA
CTCACTTCGAGGTCATTGATTTGGTATACTTCTCAGTATCTCATCAAGAAGATAACCGCATCACT
TATTTCAATCCGCTTCTCTATATCTCATCAGGAAGACGAATTTGG
Found at i:50210 original size:59 final size:59
Alignment explanation
Indices: 50105--50534 Score: 508
Period size: 59 Copynumber: 7.3 Consensus size: 59
50095 TCGGATGCAC
* * ** * *
50105 AGGGCAAAATGGTAATTTTGGGAAAATTCG-GGTCAAAAATGGGATTTTTGGAAGTTCG
1 AGGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTCAAAAATGAGATTTTTGGAAGTTCG
* * *
50163 AGGGTAAAATGATAATTTTTGGAAGTTTTGAGGTAAAAAATGAGATTTTTAGAAGTTCG
1 AGGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTCAAAAATGAGATTTTTGGAAGTTCG
* *
50222 AGGGTAAAATGGTAATTTTTAGAAGTTTTGAGGTTAAAAATGAGATTTTTGGAAGTTCG
1 AGGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTCAAAAATGAGATTTTTGGAAGTTCG
* * * * * *
50281 GGGGTAAAATGGTAATTTTAGGAAGTTTCGAGGTC-AAAATGAGATTTTTAGAAATT-T
1 AGGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTCAAAAATGAGATTTTTGGAAGTTCG
* * ** * * *
50338 AGGGGTGAAATGGTAAGTTTTAAAAGTTTCGAGGTCAAAATTGTGATTTTTGGAAGTTCG
1 A-GGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTCAAAAATGAGATTTTTGGAAGTTCG
* * * *
50398 AGGGTAAAATGATAATTTTTGGAAGTGTT-AGGGTCAAAAATGGGATTTTCGGAAGTTCG
1 AGGGTAAAATGGTAATTTTTGGAAGTTTTGA-GGTCAAAAATGAGATTTTTGGAAGTTCG
* * * * *
50457 GGGGTGAAATGGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTTG
1 AGGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTCAAAAATGAGATTTTTGGAAGTTCG
*
50516 GGGGTAAAATGGTAATTTT
1 AGGGTAAAATGGTAATTTT
50535 CAGATAGTCT
Statistics
Matches: 316, Mismatches: 50, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
58 73 0.23
59 242 0.77
60 1 0.00
ACGTcount: A:0.32, C:0.03, G:0.30, T:0.35
Consensus pattern (59 bp):
AGGGTAAAATGGTAATTTTTGGAAGTTTTGAGGTCAAAAATGAGATTTTTGGAAGTTCG
Found at i:50404 original size:176 final size:174
Alignment explanation
Indices: 50110--50534 Score: 521
Period size: 176 Copynumber: 2.4 Consensus size: 174
50100 TGCACAGGGC
* ** * * * *
50110 AAAATGGTAATTTTGGGAAAATTCGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGA
1 AAAATGGTAATTTTAGGAAGTTTCGGGTCAAAAATGGGATTTTTGAAATTTAG-GGGTAAAATGG
** * *
50175 TAATTTTTGGAAGTTTTGAGGTAAAAAATGAGATTTTTAGAAGTTCGAGGGTAAAATGGTAATTT
65 TAA-TTTTAAAAGTTTCGAGGTAAAAAATGAGATTTTTAGAAGTTCGAGGGTAAAATGATAATTT
* * *
50240 TTAGAAGT-TTTGAGGTTAAAAATGAGATTTTTGGAAGTTCGGGGGT
129 TTAGAAGTGTTAG-GGTCAAAAATGAGATTTTCGGAAGTTCGGGGGT
* *
50286 AAAATGGTAATTTTAGGAAGTTTCGAGGTC-AAAATGAGATTTTTAGAAATTTAGGGGTGAAATG
1 AAAATGGTAATTTTAGGAAGTTTCG-GGTCAAAAATGGGATTTTT-GAAATTTAGGGGTAAAATG
* * * *
50350 GTAAGTTTTAAAAGTTTCGAGGTCAAAATTGTGATTTTTGGAAGTTCGAGGGTAAAATGATAATT
64 GTAA-TTTTAAAAGTTTCGAGGTAAAAAATGAGATTTTTAGAAGTTCGAGGGTAAAATGATAATT
* *
50415 TTTGGAAGTGTTAGGGTCAAAAATGGGATTTTCGGAAGTTCGGGGGT
128 TTTAGAAGTGTTAGGGTCAAAAATGAGATTTTCGGAAGTTCGGGGGT
* * * * *
50462 GAAATGGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTTGGGGGTAAAATG
1 AAAATGGTAATTTTAGGAAG-TTTCGGGTCAAAAATGGGATTTTT-GAAATTTAGGGGTAAAATG
50527 GTAATTTT
64 GTAATTTT
50535 CAGATAGTCT
Statistics
Matches: 213, Mismatches: 31, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
176 163 0.77
177 50 0.23
ACGTcount: A:0.32, C:0.03, G:0.29, T:0.35
Consensus pattern (174 bp):
AAAATGGTAATTTTAGGAAGTTTCGGGTCAAAAATGGGATTTTTGAAATTTAGGGGTAAAATGGT
AATTTTAAAAGTTTCGAGGTAAAAAATGAGATTTTTAGAAGTTCGAGGGTAAAATGATAATTTTT
AGAAGTGTTAGGGTCAAAAATGAGATTTTCGGAAGTTCGGGGGT
Found at i:50533 original size:29 final size:29
Alignment explanation
Indices: 50140--50534 Score: 261
Period size: 29 Copynumber: 13.5 Consensus size: 29
50130 ATTCGGGTCA
* * *
50140 AAAATGG-GATTTTTGGAAGTTCGAGGGT
1 AAAATGGTAATTTTTGGAAGTTTGGGGGT
* * *
50168 AAAATGATAATTTTTGGAAGTTTTGAGGT
1 AAAATGGTAATTTTTGGAAGTTTGGGGGT
* * *
50197 AAAAAAT-G-AGATTTTTAGAAGTTCGAGGGT
1 --AAAATGGTA-ATTTTTGGAAGTTTGGGGGT
* * *
50227 AAAATGGTAATTTTTAGAAGTTTTGAGGTT
1 AAAATGGTAATTTTTGGAAG-TTTGGGGGT
*
50257 AAAAAT-G-AGATTTTTGGAAGTTCGGGGGT
1 -AAAATGGTA-ATTTTTGGAAGTTTGGGGGT
* * *
50286 AAAATGGTAATTTTAGGAAGTTTCGAGGT
1 AAAATGGTAATTTTTGGAAGTTTGGGGGT
* * *
50315 CAAAAT-G-AGATTTTTAGAAATTTAGGGGT
1 -AAAATGGTA-ATTTTTGGAAGTTTGGGGGT
* * ** * *
50344 GAAATGGTAAGTTTTAAAAGTTTCGAGGT
1 AAAATGGTAATTTTTGGAAGTTTGGGGGT
* * * *
50373 CAAAATTGTGATTTTTGGAAGTTCGAGGGT
1 -AAAATGGTAATTTTTGGAAGTTTGGGGGT
* *
50403 AAAATGATAATTTTTGGAAGTGTT-AGGGT
1 AAAATGGTAATTTTTGGAAGT-TTGGGGGT
* * *
50432 CAAAAATGG-GATTTTCGGAAGTTCGGGGGT
1 --AAAATGGTAATTTTTGGAAGTTTGGGGGT
* *
50462 GAAATGGTAATTTTTGGAAGTTTTGGGGT
1 AAAATGGTAATTTTTGGAAGTTTGGGGGT
*
50491 CAAAAATGG-GATTTTTGGAAGTTTGGGGGT
1 --AAAATGGTAATTTTTGGAAGTTTGGGGGT
50521 AAAATGGTAATTTT
1 AAAATGGTAATTTT
50535 CAGATAGTCT
Statistics
Matches: 282, Mismatches: 61, Indels: 47
0.72 0.16 0.12
Matches are distributed among these distances:
28 34 0.12
29 131 0.46
30 95 0.34
31 22 0.08
ACGTcount: A:0.32, C:0.03, G:0.29, T:0.35
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGAAGTTTGGGGGT
Done.