genome.fa.s11525.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011525.1 Kokia drynarioides strain JFW-HI SEQ_126511, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121833

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4829--4910	22	3.7	22	76	1	83	32	23	12	31	1.91
5151--5268	21	5.5	21	74	6	67	26	11	30	32	1.91
5150--5259	42	2.6	41	76	8	105	26	10	31	31	1.89
12598--12630	17	1.9	17	93	0	57	33	0	0	66	0.92
12590--12642	26	2.0	26	85	7	70	32	1	3	62	1.24
18456--18763	59	5.2	58	78	8	235	30	17	15	36	1.91
18432--18809	120	3.2	116	81	8	436	28	18	15	37	1.92
18900--19068	60	2.8	59	82	6	180	35	15	17	31	1.91
18944--19068	58	2.1	60	85	7	166	32	18	17	32	1.94
18968--19082	59	2.0	58	84	8	153	33	16	17	32	1.92
19751--19790	21	1.9	21	84	0	53	37	0	5	57	1.21
24357--24541	96	1.9	96	83	4	239	37	12	18	31	1.89
24803--25083	29	9.6	30	74	11	181	33	4	28	33	1.79
24771--24932	28	5.6	28	68	13	87	32	6	28	32	1.83
24800--25085	59	4.9	59	78	6	246	33	5	28	32	1.80
24919--25089	29	5.7	30	84	3	213	32	4	27	35	1.76
26166--26225	3	19.7	3	93	3	102	35	0	0	65	0.93
26935--27009	6	12.8	6	75	10	66	56	2	0	41	1.13
26935--27009	18	4.3	18	81	11	93	56	2	0	41	1.13
26936--26998	29	2.2	29	88	5	92	55	3	0	41	1.16
26937--26998	11	5.3	12	75	12	58	56	3	0	40	1.15
26939--27044	17	6.1	16	77	10	86	53	5	0	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27457--28003	200	2.8	199	84	3	644	22	22	19	35	1.96
27858--28249	123	3.3	123	85	4	511	20	22	20	36	1.95
35467--35511	17	2.6	18	79	13	58	53	6	0	40	1.27
37076--37147	29	2.4	30	86	6	92	54	11	1	33	1.45
37076--37154	31	2.6	30	86	6	97	51	11	2	34	1.51
39287--39331	19	2.4	19	81	7	56	37	0	4	57	1.19
40141--40201	21	2.8	22	85	7	81	14	9	0	75	1.04
41395--41420	1	26.0	1	100	0	52	0	0	0	100	0.00
44143--44173	10	3.1	10	90	0	53	41	0	0	58	0.98
44870--45005	54	2.5	52	81	8	148	24	4	33	37	1.75
45246--45293	25	1.9	25	83	8	62	47	0	0	52	1.00
45289--45313	12	2.1	12	100	0	50	68	0	0	32	0.90
46221--46299	39	1.9	42	85	10	110	48	5	13	32	1.65
51431--51484	23	2.3	23	87	0	81	9	25	20	44	1.81
52326--52383	23	2.5	23	85	2	80	13	18	17	50	1.79
52333--52424	23	4.0	23	78	5	89	14	20	21	43	1.87
59010--59083	38	1.9	38	97	0	139	29	16	14	39	1.88
68130--68177	25	1.9	25	91	0	78	14	35	12	37	1.84
69028--69074	19	2.5	19	82	6	60	65	2	0	31	1.04
69034--69074	18	2.2	19	86	4	57	65	2	0	31	1.05
69640--69679	9	4.7	9	84	15	50	30	0	0	70	0.88
71637--71697	29	2.1	29	90	6	97	26	8	31	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71678--71853	59	3.0	58	82	9	173	33	2	28	34	1.72
71680--71853	29	6.0	28	80	9	163	33	2	28	35	1.72
72903--72938	15	2.3	16	90	4	56	41	2	0	55	1.14
72917--72961	21	2.2	20	84	7	56	48	0	0	51	1.00
78016--78089	36	2.0	36	85	12	98	56	4	6	32	1.44
80376--80429	28	1.9	28	82	14	67	44	5	7	42	1.55
83391--83443	20	2.7	20	81	0	61	30	26	7	35	1.84
84778--84896	61	2.0	61	83	3	150	34	5	5	53	1.49
85652--85761	17	6.4	17	81	7	123	43	0	3	51	1.25
85652--85744	35	2.7	34	86	6	116	43	1	3	52	1.24
85684--85730	6	8.2	6	76	9	53	44	0	2	53	1.12
85652--85761	52	2.1	52	83	6	134	43	0	3	51	1.25
86470--86521	21	2.6	19	82	11	68	57	7	1	32	1.38
86753--86796	22	2.0	23	86	4	63	50	9	18	22	1.75
87591--87798	30	7.1	29	74	12	140	39	27	2	30	1.71
87591--87978	59	6.8	56	73	13	199	37	28	3	30	1.73
87766--87812	21	2.2	22	85	11	71	40	27	0	31	1.57
87736--87837	50	2.0	50	83	5	125	37	29	1	31	1.69
87787--88000	29	7.3	29	74	6	180	35	29	4	30	1.76
87783--87984	88	2.3	87	87	4	203	35	31	3	29	1.76
88012--88068	29	2.0	29	86	6	80	29	29	14	26	1.95
89965--89993	8	3.8	8	90	9	51	75	13	0	10	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90077--90136	28	2.2	28	82	8	70	30	10	28	31	1.89
90239--90401	58	2.8	58	87	4	213	38	4	23	34	1.74
90236--90419	29	6.3	29	75	10	153	37	4	25	32	1.77
91485--91532	13	3.3	15	77	14	55	41	0	0	58	0.98
92204--92275	30	2.4	30	97	2	137	16	11	33	38	1.84
92379--92421	11	3.8	11	87	6	59	55	2	2	39	1.25
92395--92439	17	2.6	18	92	3	74	55	0	4	40	1.20
92343--92439	6	16.3	6	70	18	69	49	2	4	44	1.33
92374--92425	23	2.2	23	93	3	86	50	3	1	44	1.31
92343--92439	17	5.4	18	75	15	69	49	2	4	44	1.33
92374--92433	23	2.6	23	86	7	68	53	3	3	40	1.34
92379--92449	12	6.8	11	75	22	55	56	1	2	39	1.23
94826--94873	25	1.9	24	87	8	69	64	2	0	33	1.05
95598--95631	7	4.9	7	100	0	68	58	0	11	29	1.33
95748--95796	22	2.2	21	80	16	55	55	4	6	34	1.44
96800--96836	17	2.1	19	90	10	60	56	2	0	40	1.13
98035--98083	20	2.5	20	96	3	91	36	2	0	61	1.08
99946--100299	29	12.1	29	78	12	314	33	28	4	33	1.78
99955--100206	89	2.9	87	86	5	330	34	26	3	35	1.73
99976--100244	88	3.0	87	79	7	258	34	29	3	32	1.74
99976--100291	88	3.6	86	80	10	236	34	28	3	33	1.75
102122--102170	20	2.5	20	96	3	91	36	2	0	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104033--104386	29	12.1	29	78	12	314	33	28	4	33	1.78
104042--104293	89	2.9	87	86	5	330	34	26	3	35	1.73
104063--104331	88	3.0	87	79	7	258	34	29	3	32	1.74
104063--104378	88	3.6	86	80	10	236	34	28	3	33	1.75
106799--106823	13	1.9	13	100	0	50	32	44	8	16	1.76
106272--107337	546	2.0	546	97	0	2024	27	25	20	26	1.99
109779--109806	7	4.0	7	100	0	56	42	14	28	14	1.84

Tables:   1

The End!