Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011527.1 Kokia drynarioides strain JFW-HI SEQ_126513, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2580
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32


Found at i:79 original size:16 final size:16

Alignment explanation


    Indices: 58--90  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

         48 TCGACATCTT

                            
         58 TTCCTTCTTTTCTTCC
          1 TTCCTTCTTTTCTTCC

                  *         
         74 TTCCTTTTTTTCTTCC
          1 TTCCTTCTTTTCTTCC

             
         90 T
          1 T

         91 CTATTTCCTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (16 bp):   
TTCCTTCTTTTCTTCC

Found at i:2049 original size:21 final size:21

Alignment explanation


    Indices: 2025--2064  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       2015 TGCCTCAACA

                                 
       2025 ACTTCAAATTGGTGTCCATTC
          1 ACTTCAAATTGGTGTCCATTC

                *              
       2046 ACTTTAAATTGGTGTCCAT
          1 ACTTCAAATTGGTGTCCAT

       2065 CATATATGTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40


Consensus pattern (21 bp):   
ACTTCAAATTGGTGTCCATTC

Found at i:2096 original size:87 final size:87

Alignment explanation


    Indices: 1950--2120  Score: 333
    Period size: 87  Copynumber: 2.0  Consensus size: 87

       1940 CTTTAGCCAT

                                           *                                 
       1950 TGTCCATTCACTTTAAATTGGTGTCCATCATTTATGTTTTTAATTGTGACTGCACCGTAAGGAAA
          1 TGTCCATTCACTTTAAATTGGTGTCCATCATATATGTTTTTAATTGTGACTGCACCGTAAGGAAA

                                  
       2015 TGCCTCAACAACTTCAAATTGG
         66 TGCCTCAACAACTTCAAATTGG

                                                                             
       2037 TGTCCATTCACTTTAAATTGGTGTCCATCATATATGTTTTTAATTGTGACTGCACCGTAAGGAAA
          1 TGTCCATTCACTTTAAATTGGTGTCCATCATATATGTTTTTAATTGTGACTGCACCGTAAGGAAA

                               
       2102 TGCCTCAACAACTTCAAAT
         66 TGCCTCAACAACTTCAAAT

       2121 GGTCCAGACC


Statistics
Matches: 83,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  87   83  1.00

ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36


Consensus pattern (87 bp):   
TGTCCATTCACTTTAAATTGGTGTCCATCATATATGTTTTTAATTGTGACTGCACCGTAAGGAAA
TGCCTCAACAACTTCAAATTGG
Done.