Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011529.1 Kokia drynarioides strain JFW-HI SEQ_126515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22522
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.36


Found at i:8399 original size:11 final size:11

Alignment explanation


    Indices: 8385--8441  Score: 80
    Period size: 11  Copynumber: 5.2  Consensus size: 11

       8375 TTTTTTGAAC

                       
       8385 TTTTCAAATTT
          1 TTTTCAAATTT

                        
       8396 TTTTCAAAATTT
          1 TTTTC-AAATTT

                       
       8408 TTTT-AAATTT
          1 TTTTCAAATTT

                *      
       8418 TTTTTAAATTT
          1 TTTTCAAATTT

                *      
       8429 TTTTTAAATTT
          1 TTTTCAAATTT

              
       8440 TT
          1 TT

       8442 AAAAAACATG


Statistics
Matches: 44,  Mismatches: 0, Indels: 4
        0.92            0.00        0.08

Matches are distributed among these distances:
  10   10  0.23
  11   24  0.55
  12   10  0.23

ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68


Consensus pattern (11 bp):   
TTTTCAAATTT

Found at i:12494 original size:13 final size:13

Alignment explanation


    Indices: 12473--12506  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

      12463 ATAATATAAT

                         
      12473 AATAATAATCCTA
          1 AATAATAATCCTA

                *        
      12486 AATATTAATCCTA
          1 AATAATAATCCTA

              *     
      12499 AAAAATAA
          1 AATAATAA

      12507 AGTTTAAATT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29


Consensus pattern (13 bp):   
AATAATAATCCTA

Found at i:17097 original size:20 final size:19

Alignment explanation


    Indices: 17057--17099  Score: 52
    Period size: 20  Copynumber: 2.2  Consensus size: 19

      17047 AATATTGATG

                                
      17057 AAACATTTAAATCATTCTTT
          1 AAACATTTAAATCA-TCTTT

                                 
      17077 AAACATTTAAGATC-TCGTTT
          1 AAACATTTAA-ATCATC-TTT

               
      17097 AAA
          1 AAA

      17100 TGAACTAATC


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  19    2  0.10
  20   16  0.76
  21    3  0.14

ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40


Consensus pattern (19 bp):   
AAACATTTAAATCATCTTT
Done.