Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011531.1 Kokia drynarioides strain JFW-HI SEQ_126517, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12874
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:8197 original size:30 final size:30

Alignment explanation


    Indices: 8161--8220  Score: 111
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       8151 TCATCTATGA

                                          
       8161 GCAACGATTCCAAAACACTCACCAAAATAT
          1 GCAACGATTCCAAAACACTCACCAAAATAT

                                *         
       8191 GCAACGATTCCAAAACACTCTCCAAAATAT
          1 GCAACGATTCCAAAACACTCACCAAAATAT

       8221 ACACTTTTGT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.45, C:0.30, G:0.07, T:0.18


Consensus pattern (30 bp):   
GCAACGATTCCAAAACACTCACCAAAATAT
Done.