Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011532.1 Kokia drynarioides strain JFW-HI SEQ_126518, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3026
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.31


Found at i:967 original size:24 final size:24

Alignment explanation


    Indices: 927--1014  Score: 79
    Period size: 24  Copynumber: 3.7  Consensus size: 24

        917 TTAGACTAAT

                      *         *    
        927 AAGAATTTGACTT-AAACAACTAAA
          1 AAGAATTT-AATTGAAACAAATAAA

                                    
        951 AAGAATTTAATTGAAACAAATAAA
          1 AAGAATTTAATTGAAACAAATAAA

            *   *       *   *       
        975 TAGAGTTTAATTAAAATAAATAAA
          1 AAGAATTTAATTGAAACAAATAAA

            *   *     *     
        999 CAGAGTTTAACTGAAA
          1 AAGAATTTAATTGAAA

       1015 GATTATTTCT


Statistics
Matches: 54,  Mismatches: 9, Indels: 2
        0.83            0.14        0.03

Matches are distributed among these distances:
  23    3  0.06
  24   51  0.94

ACGTcount: A:0.56, C:0.07, G:0.10, T:0.27


Consensus pattern (24 bp):   
AAGAATTTAATTGAAACAAATAAA

Found at i:1822 original size:24 final size:24

Alignment explanation


    Indices: 1783--1845  Score: 81
    Period size: 24  Copynumber: 2.6  Consensus size: 24

       1773 TAGACTAATA

                   *   *      *     
       1783 AGAATTTGACTCAAACAACTAAAC
          1 AGAATTTAACTGAAACAAATAAAC

                     *              
       1807 AGAATTTAATTGAAACAAATAAAC
          1 AGAATTTAACTGAAACAAATAAAC

               *           
       1831 AGAGTTTAACTGAAA
          1 AGAATTTAACTGAAA

       1846 GATTACTTCT


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   33  1.00

ACGTcount: A:0.52, C:0.13, G:0.11, T:0.24


Consensus pattern (24 bp):   
AGAATTTAACTGAAACAAATAAAC
Done.