Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011535.1 Kokia drynarioides strain JFW-HI SEQ_126521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 141041
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:9618 original size:647 final size:645
Alignment explanation
Indices: 8186--10781 Score: 2895
Period size: 647 Copynumber: 4.0 Consensus size: 645
8176 TAGAACTTCG
* * * *
8186 GTTCTTTATAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATAT-CATGCTTGAG
1 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACAT-TCCATGCTTAAG
* ** *
8250 AAATCGCATTAGGTGGTCCAAATAGTTTATCATTTTGTAAACAAA-TTTTGG-CTTTTGAATTAA
65 AAATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAA-AAACTTTTGGTC-TTTGAATTAA
* * * ** * *
8313 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGTTGGACTTCCGAACTTGTCAAAAT
128 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCCGAACTTGTCAAACT
* * * *
8378 TTTACTAGTTCTTTTATAAC-TTCGATTCCTTAAAGTATTCAAGATGATCCATTCGTAT-GAGCA
193 TTTACAAGTTCTTTTATAACTTTTG-TTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCA
* * * *
8441 ATTTTTTGAACATTCAATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTTATCATTTTGTA
256 ATTTTTCGAACATTCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAG-TTTGTCATTTTGTA
*
8506 AACAAATTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGG
320 AACAAATTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAGATCTTGG
* * *
8571 CCGAACTTCTGAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTCGG-----TAAAGTTTTCA
385 CCGAACTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* *
8631 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCAATGCTCAAGAAGTCACATCTTTTGGTC
450 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTC-ATGCTCAAGAAATCGCATCTTTTGGTC
* *
8696 TAAATAGTTTGCCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-
514 TAAATAGTTTGTCATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* ** * *
8760 TGATTTCTCTCTTGGTTCTTAGCTGAGA-TTTTAAAGTTGTCACACTTTTTCGAGTTCTTTTATA
578 TG-TTTCTCTCTTGGTTCTTAGCCGA-ACTTTCGAACTTGTCA-ACTTTATCGAGTTCTTTTATA
**
8824 ACTTCG
640 ACTTAA
* * * * * * *
8830 GTACCTTAAAGTATTCAAGATGATTCATTCCTTCGTA-CAATTTTTTGAACATTTCATACTCT-G
1 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGCAATTTTCTGAACATTCCATGCT-TAA
* * * *
8893 GAAATCACATCGTTTGGTCTAAACAGTTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
64 GAAATCGCATCATTTGGTCTAAATAG-TTTATCATTTTGTAAAAAACTTTTGGTCTTTGAATTAA
* *
8958 AAACTTATTTACGTGAAAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCCGAACTTTTCAAACT
128 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCCGAACTTGTCAAACT
* * *
9023 TTTACAAGTTCTTTTATAACTTTTGCTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCAAT
193 TTTACAAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* *
9088 TTTTCGAGCATTCAATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAAC
258 TTTTCGAACATTCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * *
9153 AAATTTTGGTCTTTGAACTAAAAACTTATTTTCGTGAGAATTATTTCTCTCTTGGTTCTTGGCCT
323 AAATTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAGATCTTGGCCG
** * * * *
9218 AACTTCTGAACTTGTCAATTTTTTACGAGTTGTTTT-TAACTTTTGTTCCTTAAAGTATTCAAGG
388 AACTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
* * *
9282 CGATCCATTCCTTCGAGCGATTTTCTAAACATTTCATGCTCAAGAAATCGCATCATTTGGTCTAA
453 CGATCCATTCCTTCGAGCAATTTTCTGAACA-TTCATGCTCAAGAAATCGCATCTTTTGGTCTAA
* * * *
9347 ATA-TTTGTCATTTTGTACACAACTTTAGGTCTTCGAATTTAAAACTTATTTACATGAGAATTGT
517 ATAGTTTGTCATTTTGTAAACAACTTT-GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* *
9411 TTCTCTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAACTTTATACGAGTTCTTTTATAACATA
581 TTCTCTCTTGGTTCTTAGCCGAACTTTCGAACTTGTCAACTTTAT-CGAGTTCTTTTATAACTTA
9476 A
645 A
* * * * * **
9477 ATTCCTAAAAGTATTCAAGAAGATCCATTGCATCGAGCAATTTTAGGAACATTCCATGCTTAAGA
1 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTTAAGA
* * ** * * *
9542 AATCGCATCATTTAGTCTAAAAAGGCTGTCATTTTGTAAAAAAACATTTGGTCTTTGAGTTAAAA
66 AATCGCATCATTTGGTCTAAATAGTTTATCATTTTGT-AAAAAACTTTTGGTCTTTGAATTAAAA
* * * *
9607 ACTTATTTACGTGATAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCCGATCTTTTTAAACTTT
130 ACTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCCGAACTTGTCAAACTTT
* * * * * *
9672 TACAAATTCTTTTATAATTTTTGTTCCTTAAAGCATTTAAGACGATCCATTCCATCGAGCATTTT
195 TACAAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * *
9737 TTCGAAAATTCAGTGCTCGAGAAATCACATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
260 TTCGAACATTCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * *
9802 CTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAATTAATTCACTCTTGGATCTTGGCCGAA
325 ATTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAGATCTTGGCCGAA
* * * * *
9867 CTTCCGATCTTGTCAAACATTTACAAGTTATTTTATAACTTTGGTTCCTTAAAGTATCCATA-AC
390 CTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGAC
* * * * **
9931 AATCCATTGCTTCAAGTAATTTT-TCGAACATTCAGTGCTCGGGAAA--GCAGTTCTTTTGGTCT
454 GATCCATTCCTTCGAGCAATTTTCT-GAACATTCA-TGCTCAAGAAATCGCA--TCTTTTGGTCT
* * * * *
9993 AAATTGTTTGTCATTTTGTAAACAA-TTTGGGCCTTTGATTTAAAAACTTATTTTCGTGATAATT
515 AAATAGTTTGTCATTTTGTAAACAACTTT-GGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * * * * * *
10057 ATTTCTCTCTTGTTTCTTGGCCGAACTTCCGAACTTTTCAAACATTTAT-GAGCTATTTTTTAAC
579 GTTTCTCTCTTGGTTCTTAGCCGAACTTTCGAACTTGTC-AAC-TTTATCGAGTTCTTTTATAAC
**
10121 TTTT
642 TTAA
* * * * * *
10125 GTTCCTTAAAGTTTTCAAGGCGATCCATTCTTTCGAGCAAATTTCTGAACATTCCATGCTCAGGA
1 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTTAAGA
* * * * * * * * *
10190 AGTCGCATCATTTGGTATAAATAGTTTGTTATTTTGTACACAACTTTAGATCTTTGACTTAAAAA
66 AATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAA
* * * * * *
10255 CTCATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTAAAACATTT
131 CTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCCGAACTTGTCAAACTTTT
* * *** * * * * * * * *
10320 ACGAGTTCTTTTATAACATCAATTCCTAAAATTTTTTAACACGATCCATGCCTTCGAGAAAATTT
196 ACAAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * ** * *
10385 TCAAACATTCAATACTCGAGAAATCGCATCTTTAAGACTAAATAGTTTGTCATTTTGTAAACAAC
261 TCGAACATTCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAA
* * * *
10450 TTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTA-ATTATTGGCTGAA
326 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAGA-TCTTGGCCGAA
* ** *
10514 CTTCTGAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATG
390 CTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
** * * * *
10579 A-CCTAAACCTTCGAGTAATGTTTC-GAACATTGAATGCTCGAGAAATCGCATCTTTTGGTCCAA
455 ATCC-ATTCCTTCGAGCAAT-TTTCTGAACATT-CATGCTCAAGAAATCGCATCTTTTGGTCTAA
* * **
10642 ATAGTTCGTCATTTTGTAAACAACTATTGGTCTTTAAATTAAAAACTTATTTATTTGAGAATTGT
517 ATAGTTTGTCATTTTGTAAACAACT-TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * * *
10707 TTCTCTCTTGGATCTTGGCCAAACTTTCGATCTTTTAAAACTTCTA-CAAGCTCTTTTATAACTT
581 TTCTCTCTTGGTTCTTAGCCGAACTTTCGAACTTGT-CAACTT-TATCGAGTTCTTTTATAACTT
**
10771 TG
644 AA
10773 GTTCCTTAA
1 GTTCCTTAA
10782 TGTAACAACC
Statistics
Matches: 1643, Mismatches: 266, Indels: 82
0.83 0.13 0.04
Matches are distributed among these distances:
643 8 0.00
644 176 0.11
645 186 0.11
646 33 0.02
647 810 0.49
648 395 0.24
649 30 0.02
650 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (645 bp):
GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTTAAGA
AATCGCATCATTTGGTCTAAATAGTTTATCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAA
CTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCCGAACTTGTCAAACTTTT
ACAAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
TCGAACATTCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAA
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAGATCTTGGCCGAAC
TTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGA
TCCATTCCTTCGAGCAATTTTCTGAACATTCATGCTCAAGAAATCGCATCTTTTGGTCTAAATAG
TTTGTCATTTTGTAAACAACTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
TCTTGGTTCTTAGCCGAACTTTCGAACTTGTCAACTTTATCGAGTTCTTTTATAACTTAA
Found at i:9860 original size:863 final size:855
Alignment explanation
Indices: 8173--10781 Score: 3130
Period size: 863 Copynumber: 3.0 Consensus size: 855
8163 CATGTTCCTT
* * * * * *
8173 TTTTAGAACTTCGGTTCTTTATAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACAT
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGAATTTTTC-GAACAT
* * ** * *
8238 ATC-ATGCTTGAGAAATCGCAT-TAGGTGGTCCAAATAGTTTATCATTTTGTAAACAAATTTTGG
65 -TCAATGCTCGGGAAATCGCATCT-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGG
* * * * *
8301 CTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGG-TTGGACTTCCG
128 C-TTTGAATTAAAAACTTATTTTCGTGAGAATTATTTCTCTCTTGGTTCTTGGCCT-AACTTCCG
* * **
8365 AACTTGTCAAAATTTTACTAGTTCTTTTATAAC-TTCGATTCCTTAAAGTATTCAAGATGATCCA
191 AACTTGTCAAAATTTTACGAGTT-TTTT-TAACTTTTG-TTCCTTAAAGTATTCAAGGCGATCCA
* * * *
8429 TTCGTAT-GAGCAATTTTTTGAACA-TTCAATGCTCGAGAAATCGTATCATTTGGTCTAAATAGT
253 TTCCT-TCGAGCAATTTTCTGAACATTTC-ATGCTCAAGAAATCGCATCATTTGGTCTAAATAG-
* * * *
8492 TTTATCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
315 TTTGTCATTTTGTACACAACTTTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * *
8557 CTCTTAGATCTTGGCCGAAC-TTCTGAACTTTTCAAACTTTTACAAGTTCTTTTATAAC----TT
380 CTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTC-AACTTTTACGAGTTCTTTTATAACATAATT
* * * *
8617 CGGT-AAAGTTTTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCAATGCTCAAGAAG
443 C-CTAAAAGTTTTCAAGACGATCCATTGCTTCGAGCAATTTT-AGAACATTCAATGCTCAAGAAA
* * *
8681 TCACATCTTTTGGTCTAAATAGTTTGCCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACT
506 TCGCATC-TTTAGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACT
* * * * * * * *
8746 TATTTACGTGAGAA-TGATTTCTCTCTTGGTTCTTAGCTGAGA-TTTTAAAGTTGTCACACTTTT
570 TATTTACGTGAGAATTG-TTTCTCTCTTAGATCTTGGCTGA-ACTTCTGAACTTTTCAAACTTTT
* * * *
8809 TCGAGTTCTTTTATAACTTCGGTACCTTAAAGTATTCAAGATGATTCATTCCTTCGTA-CAATTT
633 ACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCG-AGC-ATTT
* * * * *
8873 TTT-GAACATTTCATACTCTG-GAAATCACATCGTTTGGTCTAAACAGTTTTATCATTTTGTAAA
696 TTTCGAA-AATTCATGCTC-GAGAAATCACATCTTTTGGTCTAAATAG-TTTGTCATTTTGTAAA
* *
8936 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTAGATCTTGGCC
758 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCC
*
9001 GAACTTCCGAACTTTTCAAACTTTTACAAGTTC
823 GAACTTCCGATCTTTTCAAACTTTTACAAGTTC
* * * *
9034 TTTTATAACTTTTGCTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCAATTTTTCGAGCAT
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAG-AATTTTTCGAACAT
9099 TCAATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTC
65 TCAATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGG-C
* *
9164 TTTGAACTAAAAACTTATTTTCGTGAGAATTATTTCTCTCTTGGTTCTTGGCCTAACTTCTGAAC
129 TTTGAATTAAAAACTTATTTTCGTGAGAATTATTTCTCTCTTGGTTCTTGGCCTAACTTCCGAAC
**
9229 TTGTCAATTTTTTACGAGTTGTTTTTAACTTTTGTTCCTTAAAGTATTCAAGGCGATCCATTCCT
194 TTGTCAAAATTTTACGAGTT-TTTTTAACTTTTGTTCCTTAAAGTATTCAAGGCGATCCATTCCT
* *
9294 TCGAGCGATTTTCTAAACATTTCATGCTCAAGAAATCGCATCATTTGGTCTAAATA-TTTGTCAT
258 TCGAGCAATTTTCTGAACATTTCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * *
9358 TTTGTACACAACTTTAGGTCTTCGAATTTAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGT
323 TTTGTACACAACTTTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* *
9423 TCTTAGACGAACTTTCGAACTTGTCAACTTTATACGAGTTCTTTTATAACATAAATTCCTAAAAG
388 TCTTGGCCGAACTTTCGAACTTGTCAACTTT-TACGAGTTCTTTTATAACAT-AATTCCTAAAAG
* * * * *
9488 TATTCAAGAAGATCCATTGCATCGAGCAATTTTAGGAACATTCCATGCTTAAGAAATCGCATCAT
451 TTTTCAAGACGATCCATTGCTTCGAGCAATTTTA-GAACATTCAATGCTCAAGAAATCGCATC-T
* ** * *
9553 TTAGTCTAAAAAGGCTGTCATTTTGTAAAAAAACATTTGGTCTTTGAGTTAAAAACTTATTTACG
514 TTAGTCTAAATAGTTTGTCATTTTGT-AAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * * *
9618 TGATAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCCGATCTTTTTAAACTTTTACAAATTCTT
578 TGAGAATTGTTTCTCTCTTAGATCTTGGCTGAACTTCTGAACTTTTCAAACTTTTACGAGTTCTT
* * * * * *
9683 TTATAATTTTTGTTCCTTAAAGCATTTAAGACGATCCATTCCATCGAGCATTTTTTCGAAAATTC
643 TTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCATTTTTTCGAAAATTC
9748 AGTGCTCGAGAAATCACATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
708 A-TGCTCGAGAAATCACATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* ** *
9813 TGAGTTAAAAACTTATTTACGTGAGAATTAATTCACTCTTGGATCTTGGCCGAACTTCCGATCTT
772 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGATCTT
* * *
9878 GTCAAACATTTACAAGTTA
837 TTCAAACTTTTACAAGTTC
* * *
9897 TTTTATAACTTTGGTTCCTTAAAGTATCCATA-ACAATCCATTGCTTCAAGTAATTTTTCGAACA
1 TTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACAATCCATTCCTTCGAG-AATTTTTCGAACA
* * *
9961 TTCAGTGCTCGGGAAA--GCAGTTCTTTTGGTCTAAATTGTTTGTCATTTTGTAAAC-AATTTGG
64 TTCAATGCTCGGGAAATCGCA--TCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTG
* * * *
10023 GCCTTTGATTTAAAAACTTATTTTCGTGATAATTATTTCTCTCTTGTTTCTTGGCCGAACTTCCG
127 G-CTTTGAATTAAAAACTTATTTTCGTGAGAATTATTTCTCTCTTGGTTCTTGGCCTAACTTCCG
* * *
10088 AACTTTTCAAACA-TTTATGAGCTATTTTTTAACTTTTGTTCCTTAAAGTTTTCAAGGCGATCCA
191 AACTTGTCAAA-ATTTTACGAG-T-TTTTTTAACTTTTGTTCCTTAAAGTATTCAAGGCGATCCA
* * * * * *
10152 TTCTTTCGAGCAAATTTCTGAACATTCCATGCTCAGGAAGTCGCATCATTTGGTATAAATAGTTT
253 TTCCTTCGAGCAATTTTCTGAACATTTCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
10217 GTTATTTTGTACACAACTTTAGATCTTTGACTTAAAAACTCATTTACGTGAGAATAGTTTCTCTC
318 GTCATTTTGTACACAACTTTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * *
10282 TTGGTTCTTGGCCGAACTTCCGAACTTGTAAAACATTTACGAGTTCTTTTATAACATCAATTCCT
383 TTGGTTCTTGGCCGAACTTTCGAACTTGT-CAACTTTTACGAGTTCTTTTATAACAT-AATTCCT
* * * * * *
10347 AAAATTTTTTAACACGATCCA-TGCCTTCGAGAAAATTTTCA-AACATTCAATACTCGAGAAATC
446 AAAAGTTTTCAAGACGATCCATTG-CTTCGAG-CAATTTT-AGAACATTCAATGCTCAAGAAATC
* * *
10410 GCATCTTTAAGACTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCATTGAATTAAAAACTTA
508 GCATCTTT-AGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTA
* *
10475 TTTACGTGAGAATTGTTTCTCTCTTA-ATTATTGGCTGAACTTCTGAACTTTTCAAACTTTTATG
572 TTTACGTGAGAATTGTTTCTCTCTTAGA-TCTTGGCTGAACTTCTGAACTTTTCAAACTTTTACG
** * * *
10539 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGA-CCTAAACCTTCGAGTAATGTTTC
636 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCC-ATTCCTTCGAGCATTTTTTC
* * * * * *
10603 GAACATTGAATGCTCGAGAAATCGCATCTTTTGGTCCAAATAGTTCGTCATTTTGTAAACAACTA
700 GAAAATT-CATGCTCGAGAAATCACATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* ** *
10668 TTGGTCTTTAAATTAAAAACTTATTTATTTGAGAATTGTTTCTCTCTTGGATCTTGGCCAAACTT
764 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTT
* * * *
10733 TCGATCTTTTAAAACTTCTACAAGCTC
829 CCGATCTTTTCAAACTTTTACAAGTTC
10760 TTTTATAACTTTGGTTCCTTAA
1 TTTTATAACTTTGGTTCCTTAA
10782 TGTAACAACC
Statistics
Matches: 1497, Mismatches: 212, Indels: 76
0.84 0.12 0.04
Matches are distributed among these distances:
857 6 0.00
858 99 0.07
859 4 0.00
860 79 0.05
861 185 0.12
862 94 0.06
863 686 0.46
864 330 0.22
865 13 0.01
866 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (855 bp):
TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGAATTTTTCGAACATT
CAATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGCTT
TGAATTAAAAACTTATTTTCGTGAGAATTATTTCTCTCTTGGTTCTTGGCCTAACTTCCGAACTT
GTCAAAATTTTACGAGTTTTTTTAACTTTTGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCG
AGCAATTTTCTGAACATTTCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
GTACACAACTTTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
TGGCCGAACTTTCGAACTTGTCAACTTTTACGAGTTCTTTTATAACATAATTCCTAAAAGTTTTC
AAGACGATCCATTGCTTCGAGCAATTTTAGAACATTCAATGCTCAAGAAATCGCATCTTTAGTCT
AAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
GTTTCTCTCTTAGATCTTGGCTGAACTTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACT
TTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCATTTTTTCGAAAATTCATGCTCGA
GAAATCACATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGATCTTTTCAAACTT
TTACAAGTTC
Found at i:9966 original size:216 final size:216
Alignment explanation
Indices: 8173--10781 Score: 2801
Period size: 216 Copynumber: 12.1 Consensus size: 216
8163 CATGTTCCTT
* * * * *
8173 TTTTAGAACTTCGGTTCTTTATAGTATTCAAGACGATCCATTCCTTCGAG-AAATTTTCTGAACA
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACA
* ** * * *
8237 TATC-ATGCTTGAGAAATCGCAT-TAGGTGGTCCAAATAGTTTATCATTTTGTAAACAAATTTTG
65 T-TCAATGCTCGAGAAATCGCATCT-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * ** *
8300 G-CTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGTTGGACTTCC
128 GTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCC
* *
8364 GAACTTGTCAAAATTTTACTAGTTC
192 GAACTTGTCAAACTTTTACGAGTTC
* * * * *
8389 TTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCGTAT-GAGCAATTTTTTGAACA
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAATTTTTCGAACA
* * * *
8453 TTCAATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTTATCATTTTGTAAACAAATTTTGG
65 TTCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACTTTTGG
* *
8518 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCTGA
129 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGA
* *
8583 ACTTTTCAAACTTTTACAAGTTC
194 ACTTGTCAAACTTTTACGAGTTC
* *
8606 TTTTATAACTTCGG-----TAAAGTTTTCAAGACGATCCATTCCTTCGAGCAA-TTTTCTGAACA
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACA
* * * * *
8665 TTCAATGCTCAAGAAGTCACATCTTTTGGTCTAAATAGTTTGCCATTTTGTAAAAAACTTTTGGT
65 TTCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * ***
8730 CTTTGAATTAAAAACTTATTTACGTGAGAA-TGATTTCTCTCTTGGTTCTTAGCTGAGA-TTTTA
130 CTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTTCTCTCTTGGATCTTGGCCGA-ACTTCCG
* * *
8793 AAGTTGTCACACTTTTTCGAGTTC
193 AACTTGTCAAACTTTTACGAGTTC
* * * * *
8817 TTTTATAACTTCGGTACCTTAAAGTATTCAAGATGATTCATTCCTTCGTA-CAATTTTTTGAACA
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGCAATTTTTCGAACA
* * * * *
8881 TTTC-ATACTCTG-GAAATCACATCGTTTGGTCTAAACAGTTTTATCATTTTGTAAACAACTTTT
65 -TTCAATGCTC-GAGAAATCGCATCTTTTGGTCTAAATAG-TTTGTCATTTTGTAAACAACTTTT
* *
8944 GGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCC
127 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCC
* *
9009 GAACTTTTCAAACTTTTACAAGTTC
192 GAACTTGTCAAACTTTTACGAGTTC
* * * * *
9034 TTTTATAACTTTTGCTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCAATTTTTCGAGCAT
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* *
9099 TCAATGCTCGGGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTC
66 TCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * * * * *
9164 TTTGAACTAAAAACTTATTTTCGTGAGAATTATTTCTCTCTTGGTTCTTGGCCTAACTTCTGAAC
131 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGAAC
** *
9229 TTGTCAATTTTTTACGAGTTG
196 TTGTCAAACTTTTACGAGTTC
* * * *
9250 TTTT-TAACTTTTGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCGA-TTTTCTAAACA
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACA
* * * *
9313 TTTC-ATGCTCAAGAAATCGCATCATTTGGTCTAAATA-TTTGTCATTTTGTACACAACTTTAGG
65 -TTCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * * * * *
9376 TCTTCGAATTTAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTTCGA
129 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGA
9441 ACTTGTC-AACTTTATACGAGTTC
194 ACTTGTCAAACTTT-TACGAGTTC
* *** * * * * **
9464 TTTTATAACATAAATTCCTAAAAGTATTCAAGAAGATCCATTGCATCGAGCAATTTTAGGAACAT
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* ** * * * ** * *
9529 TCCATGCTTAAGAAATCGCATCATTTAGTCTAAAAAGGCTGTCATTTTGTAAAAAAACATTTGGT
66 TCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGT
* * * *
9594 CTTTGAGTTAAAAACTTATTTACGTGATAATTGTTTCTCTCTTAGATCTTGGCCGAACTTCCGAT
130 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGAA
* * * *
9659 CTTTTTAAACTTTTACAAATTC
195 CTTGTCAAACTTTTACGAGTTC
* * * * * * *
9681 TTTTATAATTTTTGTTCCTTAAAGCATTTAAGACGATCCATTCCATCGAGCATTTTTTCGAAAAT
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* *
9746 TCAGTGCTCGAGAAATCACATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
66 TCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* ** * *
9811 TTTGAGTTAAAAACTTATTTACGTGAGAATTAATTCACTCTTGGATCTTGGCCGAACTTCCGATC
131 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGAAC
* * *
9876 TTGTCAAACATTTACAAGTTA
196 TTGTCAAACTTTTACGAGTTC
* * * * *
9897 TTTTATAACTTTGGTTCCTTAAAGTATCCATA-ACAATCCATTGCTTCAAGTAATTTTTCGAACA
1 TTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTTTCGAACA
* * * *
9961 TTCAGTGCTCGGGAAA--GCAGTTCTTTTGGTCTAAATTGTTTGTCATTTTGTAAACAA-TTTGG
65 TTCAATGCTCGAGAAATCGCA--TCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * * * **
10023 GCCTTTGATTTAAAAACTTATTTTCGTGATAATTATTTCTCTCTTGTTTCTTGGCCGAACTTCCG
128 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCG
* * * * *
10088 AACTTTTCAAACATTTATGAGCTA
193 AACTTGTCAAACTTTTACGAGTTC
* * * * * *
10112 TTTTTTAACTTTTGTTCCTTAAAGTTTTCAAGGCGATCCATTCTTTCGAGCAA-ATTTCTGAACA
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACA
* * * * * * * *
10176 TTCCATGCTC-AGGAAGTCGCATCATTTGGTATAAATAGTTTGTTATTTTGTACACAACTTTAGA
65 TTCAATGCTCGA-GAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * *
10240 TCTTTGACTTAAAAACTCATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGA
129 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGA
* *
10305 ACTTGTAAAACATTTACGAGTTC
194 ACTTGTCAAACTTTTACGAGTTC
* *** * * * * * * * * *
10328 TTTTATAACATCAATTCCTAAAATTTTTTAACACGATCCATGCCTTCGAGAAAATTTTCAAACAT
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* ** *
10393 TCAATACTCGAGAAATCGCATCTTTAAGACTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
66 TCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * * * *
10458 ATTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-AATTATTGGCTGAACTTCTGAA
131 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGA-TCTTGGCCGAACTTCCGAA
* *
10522 CTTTTCAAACTTTTATGAGTTC
195 CTTGTCAAACTTTTACGAGTTC
* ** * *
10544 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGA-CCTAAACCTTCGAGTAATGTTTCGAACA
1 TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC-ATTCCTTCGAGCAATTTTTCGAACA
* * * *
10608 TTGAATGCTCGAGAAATCGCATCTTTTGGTCCAAATAGTTCGTCATTTTGTAAACAACTATTGGT
65 TTCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* ** * * *
10673 CTTTAAATTAAAAACTTATTTATTTGAGAATTGTTTCTCTCTTGGATCTTGGCCAAACTTTCGAT
130 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGAA
* * * * *
10738 CTTTTAAAACTTCTACAAGCTC
195 CTTGTCAAACTTTTACGAGTTC
10760 TTTTATAACTTTGGTTCCTTAA
1 TTTTATAACTTTGGTTCCTTAA
10782 TGTAACAACC
Statistics
Matches: 1998, Mismatches: 347, Indels: 96
0.82 0.14 0.04
Matches are distributed among these distances:
210 2 0.00
211 113 0.06
212 68 0.03
213 4 0.00
214 111 0.06
215 320 0.16
216 892 0.45
217 479 0.24
218 9 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
TCAATGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGCCGAACTTCCGAAC
TTGTCAAACTTTTACGAGTTC
Found at i:11809 original size:216 final size:212
Alignment explanation
Indices: 11324--13161 Score: 1695
Period size: 216 Copynumber: 8.7 Consensus size: 212
11314 ATAAGAATTG
* ** * *
11324 AATTCGAAGACCAAAAGTTGTTAACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCTCG
1 AATTCAAAGACCAAAAACTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCG
* ** * * * *
11389 AGTATGGAATGTTTCG-AAAATGTCCCGAAGTAAGGGATCATCTTAAATACTTTAAGGAACCGAA
66 AGCATGGAATG-TTCGAAAAATG-CTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAA
* * * * *
11453 GTTA-AAAATAACTAGTAAAAATTTGACA--T---GTTCATCCTAGAACCAAGAGAGATACAATT
129 GTTATAAAAGAACTCGTAAAAGTTTGACAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATT
*
11512 CTCACATAAATAAGTTTTG
194 CTCACATAAATAAGTTTTT
* *
11531 AATTGAAAGACC-AAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
1 AATTCAAAGACCAAAAACT-GTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
* * * *
11595 GAGCATGGATTGTTCGAAAAATAGCTTGAGGGAATGGATCACCTTGAATACTCTAAGGAACTGAA
65 GAGCATGGAATGTTCGAAAAAT-GCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAA
*
11660 GTTATAAAAGAAC-CTGTAAAAGTCTGACAAGTTCCAAAGTTCGTCCAAGAACCAAAGAGAGATA
129 GTTATAAAAGAACTC-GTAAAAGTTTGAC-AGTT-C-AAGTTCGTCCAAGAACC-AAGAGAGATA
* ** * *
11724 TAATTCTCATGTAAACAATTTTTT
189 CAATTCTCACATAAATAAGTTTTT
* * * ** * *
11748 AATTTAAAAACCAAAAACTGGTTAC-AAATGACATCCTATTTGGACCAAATGATGTGATTTCTCA
1 AATTCAAAGACCAAAAACTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCG
* * * ** *
11812 AGCCTAGAATGCTCGAAAAATTGCTTGAAGGAATGGATTGTATTGAATAC-TT-------T-AAG
66 AGCATGGAATGTTCGAAAAA-TGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAG
* * * * * *
11868 -----AAAGACCTCGTAAAAGTTCGACCATTTCGAAGGTTTGTCCACGAACCAGGAGAGATACAA
130 TTATAAAAGAACTCGTAAAAGTTTGA-CAGTTC-AA-GTTCGTCCAAGAACCAAGAGAGATACAA
**
11928 TTCTCAGGTAAATAAGTTTTT
192 TTCTCACATAAATAAGTTTTT
* * ** * *
11949 AATTTAATGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAGCGATTTCCCG
1 AATTCAAAGACCAAAAACTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCG
** * *** * * * *
12014 TTCATGGAATGTTTGGGGAATGTCTTGAAGGAAAGGATCATGTTGAATACTTGAAGGAACCGAAG
66 AGCATGGAATGTTCGAAAAATG-CTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAG
* *
12079 TTGTAAAGGAACTCGTAAAAGTTTG--A---CAAGTTCGTCCAAGAACCAAGAGAGATACAATTC
130 TTATAAAAGAACTCGTAAAAGTTTGACAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATTC
**
12139 TCA-AGTAAATAAGGATTT
195 TCACA-TAAATAAGTTTTT
* ** ** * * * * *
12157 AATTCGAAGACCAAAAGTTGTTTACAAAATGGTAAACTATTTTGAGCAAATAATGCCATTTCCCG
1 AATTCAAAGACCAAAAACTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCG
* *** ** *
12222 AGTATGGAATGTTCGGGTAATGTCTAAAAGGAAAT-GAT-ATTCTTGAATACTTTAAGGAACCGA
66 AGCATGGAATGTTCGAAAAATG-CTTGAAGG-AATGGATCA-TCTTGAATACTTTAAGGAACTGA
* * * **
12285 AGATAAAAAAGAACTAGTAAAAGTTTG--A---CAAGTTCGTCCTGGAACCAAGAGAGATACAAT
128 AGTTATAAAAGAACTCGTAAAAGTTTGACAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAAT
12345 TCTCACATAAATAAGTTTTT
193 TCTCACATAAATAAGTTTTT
* * * *
12365 AATTCAAAGACC-AAAAGTAGTTTACAAAATGATAAACTATTTGGACCAAATAATGTGATTTCTC
1 AATTCAAAGACCAAAAACT-GTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
* * * * *
12429 GAGCATGGAATGTTCGAAAAATATCTTGAAGGAATGGATCGTCTTGACTACTTTAAGGAATTAAA
65 GAGCATGGAATGTTCGAAAAAT-GCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAA
* * * *
12494 GTTAGAAAAGAACTCGTAAAAGTCTG-CAAGTTCCAAAGTTCGTCTAAGAACCAAAGAAAGATAC
129 GTTATAAAAGAACTCGTAAAAGTTTGAC-AGTT-C-AAGTTCGTCCAAGAACC-AAGAGAGATAC
**
12558 AATTCTCATGTAAATAAGTTTTT
190 AATTCTCACATAAATAAGTTTTT
* * * * *
12581 AATTCAAAAACCAAAAGCTGGTTACAAAATGAGAAACTATTTTGACCAAATGATGCGATTTCTC-
1 AATTCAAAGACCAAAAACTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCG
* * *
12645 AGGCATTGAATGTTCGAAAAATAGCTTGAAGGAATGGATCGTCTTAAATACTTTAAGGAACTGAC
66 A-GCATGGAATGTTCGAAAAAT-GCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGA-
* * * ** *
12710 A-TTAAAAAAGAACTCGTAAAAGTTT----G-T-AAGTTCATCCTAGAATTAGGAGAGATACAAT
128 AGTTATAAAAGAACTCGTAAAAGTTTGACAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAAT
* *
12768 TGTTACATAAATAAGTTTTT
193 TCTCACATAAATAAGTTTTT
* *
12788 AATTGAAAGACC-AAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
1 AATTCAAAGACCAAAAACT-GTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
* * *
12852 GAGCATGGAATGTTCGAAAAATTGCTTGAGGGAATGGATCGTCATGAATACTTTAAGGAACTGAA
65 GAGCATGGAATGTTCGAAAAA-TGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAA
* * *
12917 GTTATAAAAGAACTTGTAAAAGTCTGACAAGTTCCAAAGTTCATCCAAGAACCAAAGAGAGATAC
129 GTTATAAAAGAACTCGTAAAAGTTTGAC-AGTT-C-AAGTTCGTCCAAGAACC-AAGAGAGATAC
*
12982 AATTCTCATATAAATAAGTTTTT
190 AATTCTCACATAAATAAGTTTTT
* * * * * * *
13005 AATTCAAAGACCAAGAGCAGGTTAC-AAATGACAACCTATTTGGACCATATGATGCGATTTCTCA
1 AATTCAAAGACCAAAAACTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCG
* * * * * * * *
13069 AGCCTGAAATGGTCGAAAAGTTGCTCGAAGGAATGGATCGTCATGAATACTTTAAGGAACCGAAG
66 AGCATGGAATGTTCGAAAA-ATGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAG
13134 TTATAAAAGAACTCGTAAAAGTTTGACA
130 TTATAAAAGAACTCGTAAAAGTTTGACA
13162 AGTTTGATAG
Statistics
Matches: 1341, Mismatches: 220, Indels: 132
0.79 0.13 0.08
Matches are distributed among these distances:
201 54 0.04
202 99 0.07
203 3 0.00
206 13 0.01
207 272 0.20
208 367 0.27
209 6 0.00
210 2 0.00
211 5 0.00
212 2 0.00
213 2 0.00
214 1 0.00
215 17 0.01
216 396 0.30
217 95 0.07
218 7 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (212 bp):
AATTCAAAGACCAAAAACTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCG
AGCATGGAATGTTCGAAAAATGCTTGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGT
TATAAAAGAACTCGTAAAAGTTTGACAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATTCT
CACATAAATAAGTTTTT
Found at i:12892 original size:423 final size:423
Alignment explanation
Indices: 11324--13159 Score: 2078
Period size: 423 Copynumber: 4.4 Consensus size: 423
11314 ATAAGAATTG
* * *
11324 AATTCGAAGACCAAAAG-TTGTTAACAAAATGACAGACTATTTGGACCAAATGATGCGATTTCTC
1 AATTCAAAGACCAAAAGCTGGTT-ACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
* * * * * *
11388 -GAGTATGGAATGTTTCG-AAAATGTCCCGAAGTAAGGGATCATCTTAAATACTTTAAGGAACCG
65 AG-GCATGGAATG-TTCGAAAAATG-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCG
* * * *
11451 AAGTT-AAAAATAACTAGTAAAAATTTGACATGTTCATCCTAGAACCAAGAGAGATACAATTCTC
127 AAGTTAAAAAAGAACTCGTAAAAGTTTGA-AGGTTCATCCTAGAACCAAGAGAGATACAATTCTC
*
11515 ACATAAATAAGTTTTGAATTGAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAA
191 ACATAAATAAGTTTTTAATTGAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAA
* * * *
11580 ATGATGCGATTTCTCGAGCATGGATTGTTCGAAAAATAGCTTGAGGGAATGGATCACCTTGAATA
256 ATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCATCTTGAATA
* *
11645 CTCTAAGGAACTGAAGTTATAAAAGAAC-CTGTAAAAGTCTGACAAGTTCCAAAGTTCGTCCAAG
321 CTTTAAGGAACTGAAGTTAGAAAAGAACTC-GTAAAAGTCTGACAAGTTCCAAAGTTCGTCCAAG
* * *
11709 AACCAAAGAGAGATATAATTCTCATGTAAACAATTTTTT
385 AACCAAAGAGAGATACAATTCTCATGTAAATAAGTTTTT
* * * ** *
11748 AATTTAAAAACCAAAAACTGGTTAC-AAATGACATCCTATTTGGACCAAATGATGTGATTTCTCA
1 AATTCAAAGACCAAAAGCTGGTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCA
* * * * * * * * **
11812 AGCCTAGAATGCTCGAAAAATTGCTTGAAGGAATGGATTGTATTGAATACTTTAA-GAA-AGACC
66 GGCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
*** * ** ** * *
11875 TCGTAAAAG--TTCG-ACCA-TTTCGAAGGTTTGTCC-ACGAACCAGGAGAGATACAATTCTCAG
130 TTAAAAAAGAACTCGTAAAAGTTT-GAAGGTTCATCCTA-GAACCAAGAGAGATACAATTCTCAC
* * * *
11935 GTAAATAAGTTTTTAATTTAATGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
193 ATAAATAAGTTTTTAATTGAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAAT
* * ** * *** * *
12000 GAAGCGATTTCCCGTTCATGGAATGTTTGGGGAA-TGTCTTGAAGGAAAGGATCATGTTGAATAC
258 GATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTG-CTTGAAGGAATGGATCATCTTGAATAC
* * * *
12064 TTGAAGGAACCGAAGTT-GTAAAGGAACTCGTAAAAGTTTG---A----C-AAGTTCGTCCAAGA
322 TTTAAGGAACTGAAGTTAG-AAAAGAACTCGTAAAAGTCTGACAAGTTCCAAAGTTCGTCCAAGA
* **
12120 ACC-AAGAGAGATACAATTCTCAAGTAAATAAGGATTT
386 ACCAAAGAGAGATACAATTCTCATGTAAATAAGTTTTT
* * * ** * * * * *
12157 AATTCGAAGACCAAAAGTTGTTTACAAAATGGTAAACTATTTTGAGCAAATAATGCCATTTC-CC
1 AATTCAAAGACCAAAAGCTGGTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCA
* *** ** **
12221 GAGTATGGAATGTTCGGGTAATGTCTAAAAGGAAAT-GATATTCTTGAATACTTTAAGGAACCGA
66 G-GCATGGAATGTTCGAAAAATG-CTCGAAGG-AATGGATCGTCTTGAATACTTTAAGGAACCGA
* * * * *
12285 AGATAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGTCCTGGAACCAAGAGAGATACAATTCTCA
128 AGTTAAAAAAGAACTCGTAAAAGTTTGA-AGGTTCATCCTAGAACCAAGAGAGATACAATTCTCA
* *
12350 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGATAAACTATTTGGACCAAA
192 CATAAATAAGTTTTTAATTGAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAA
* * * *
12415 TAATGTGATTTCTCGAGCATGGAATGTTCGAAAAATAT-CTTGAAGGAATGGATCGTCTTGACTA
257 TGATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT-TGCTTGAAGGAATGGATCATCTTGAATA
* * *
12479 CTTTAAGGAATTAAAGTTAGAAAAGAACTCGTAAAAGTCTG-CAAGTTCCAAAGTTCGTCTAAGA
321 CTTTAAGGAACTGAAGTTAGAAAAGAACTCGTAAAAGTCTGACAAGTTCCAAAGTTCGTCCAAGA
*
12543 ACCAAAGAAAGATACAATTCTCATGTAAATAAGTTTTT
386 ACCAAAGAGAGATACAATTCTCATGTAAATAAGTTTTT
* * *
12581 AATTCAAAAACCAAAAGCTGGTTACAAAATGAGAAACTATTTTGACCAAATGATGCGATTTCTCA
1 AATTCAAAGACCAAAAGCTGGTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCA
* * * *
12646 GGCATTGAATGTTCGAAAAATAGCTTGAAGGAATGGATCGTCTTAAATACTTTAAGGAACTGACA
66 GGCATGGAATGTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA-A
** * * *
12711 -TTAAAAAAGAACTCGTAAAAGTTTGTAA-GTTCATCCTAGAATTAGGAGAGATACAATTGTTAC
129 GTTAAAAAAGAACTCGTAAAAGTTTG-AAGGTTCATCCTAGAACCAAGAGAGATACAATTCTCAC
12774 ATAAATAAGTTTTTAATTGAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAAT
193 ATAAATAAGTTTTTAATTGAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAAT
* * *
12839 GATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAGGGAATGGATCGTCATGAATACT
258 GATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCATCTTGAATACT
* * *
12904 TTAAGGAACTGAAGTTATAAAAGAACTTGTAAAAGTCTGACAAGTTCCAAAGTTCATCCAAGAAC
323 TTAAGGAACTGAAGTTAGAAAAGAACTCGTAAAAGTCTGACAAGTTCCAAAGTTCGTCCAAGAAC
*
12969 CAAAGAGAGATACAATTCTCATATAAATAAGTTTTT
388 CAAAGAGAGATACAATTCTCATGTAAATAAGTTTTT
* * * *
13005 AATTCAAAGACCAAGAGCAGGTTAC-AAATGACAACCTATTTGGACCATATGATGCGATTTCTCA
1 AATTCAAAGACCAAAAGCTGGTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCA
* * * * * *
13069 AGCCTGAAATGGTCGAAAAGTTGCTCGAAGGAATGGATCGTCATGAATACTTTAAGGAACCGAAG
66 GGCATGGAATGTTCGAAAA-ATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
*
13134 TTATAAAAGAACTCGTAAAAGTTTGA
130 TTAAAAAAGAACTCGTAAAAGTTTGA
13160 CAAGTTTGAT
Statistics
Matches: 1165, Mismatches: 205, Indels: 86
0.80 0.14 0.06
Matches are distributed among these distances:
409 50 0.04
410 79 0.07
411 7 0.01
412 7 0.01
414 2 0.00
415 5 0.00
416 173 0.15
417 3 0.00
418 174 0.15
419 5 0.00
420 2 0.00
421 3 0.00
422 14 0.01
423 383 0.33
424 249 0.21
425 9 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (423 bp):
AATTCAAAGACCAAAAGCTGGTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCA
GGCATGGAATGTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
TAAAAAAGAACTCGTAAAAGTTTGAAGGTTCATCCTAGAACCAAGAGAGATACAATTCTCACATA
AATAAGTTTTTAATTGAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATGAT
GCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCATCTTGAATACTTTA
AGGAACTGAAGTTAGAAAAGAACTCGTAAAAGTCTGACAAGTTCCAAAGTTCGTCCAAGAACCAA
AGAGAGATACAATTCTCATGTAAATAAGTTTTT
Found at i:13163 original size:216 final size:213
Alignment explanation
Indices: 11868--13165 Score: 1361
Period size: 208 Copynumber: 6.1 Consensus size: 213
11858 ATACTTTAAG
* * * * * * *
11868 AAAGACCTCGTAAAAGTTCGACCATTTCGAAGGTTTGTCCACGAACCAGGAGAGATACAATTCTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTC-AA-G-TTCTCCAAGAACCAAGAGAGATACAATTCTC
** * * *
11933 AGGTAAATAAGTTTTTAATTTAATGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAA
63 ACATAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAA
* * ** * *** * * *
11998 ATGAAGCGATTTCCCGTTCATGGAATGTTTGGGGAA-TGTCTTGAAGGAAAGGATCATGTTGAAT
128 ATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTG-CTTGAAGGAATGGATCGTCTTGAAT
* *
12062 ACTTGAAGGAACCGAAGTTGTA
192 ACTTTAAGGAACCGAAGTTATA
*
12084 AAGGAACTCGTAAAAGTTTGACAAGTTC--G---TCCAAGAACCAAGAGAGATACAATTCTCA-A
1 AAAGAACTCGTAAAAGTTTGACAAGTTCAAGTTCTCCAAGAACCAAGAGAGATACAATTCTCACA
** * * ** * *
12143 GTAAATAAGGATTTAATTCGAAGACCAAAAGTTGTTTACAAAATGGTAAACTATTTTGAGCAAAT
66 -TAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAAT
* * * * *** ** **
12208 AATGCCATTTCCCGAGTATGGAATGTTCGGGTAA-TGTCTAAAAGGAAAT-GATATTCTTGAATA
130 GATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTG-CTTGAAGG-AATGGATCGTCTTGAATA
* *
12271 CTTTAAGGAACCGAAGATAAA
193 CTTTAAGGAACCGAAGTTATA
* **
12292 AAAGAACTAGTAAAAGTTTGACAAGTTC--G---TCCTGGAACCAAGAGAGATACAATTCTCACA
1 AAAGAACTCGTAAAAGTTTGACAAGTTCAAGTTCTCCAAGAACCAAGAGAGATACAATTCTCACA
* *
12352 TAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGATAAACTATTTGGACCAAATA
66 TAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATG
* *
12417 ATGTGATTTCTCGAGCATGGAATGTTCGAAAAATAT-CTTGAAGGAATGGATCGTCTTGACTACT
131 ATGCGATTTCTCGAGCATGGAATGTTCGAAAAAT-TGCTTGAAGGAATGGATCGTCTTGAATACT
*** *
12481 TTAAGGAATTAAAGTTAGA
195 TTAAGGAACCGAAGTTATA
* * *
12500 AAAGAACTCGTAAAAGTCTG-CAAGTTCCAAAGTTCGTCTAAGAACCAAAGAAAGATACAATTCT
1 AAAGAACTCGTAAAAGTTTGACAAGTT-C-AAGTTC-TCCAAGAACC-AAGAGAGATACAATTCT
** * * * *
12564 CATGTAAATAAGTTTTTAATTCAAAAACCAAAAGCT-GGTTACAAAATGAGAAACTATTTTGACC
62 CACATAAATAAGTTTTTAATTCAAAGACCAAAAG-TAGTTTACAAAATGACAAACTATTTGGACC
* * *
12628 AAATGATGCGATTTCTC-AGGCATTGAATGTTCGAAAAATAGCTTGAAGGAATGGATCGTCTTAA
126 AAATGATGCGATTTCTCGA-GCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGA
* *
12692 ATACTTTAAGGAACTGACA-TTAAA
190 ATACTTTAAGGAACCGA-AGTTATA
* * ** * * *
12716 AAAGAACTCGTAAAAGTTTG-TAAGTTC-A----TCCTAGAATTAGGAGAGATACAATTGTTACA
1 AAAGAACTCGTAAAAGTTTGACAAGTTCAAGTTCTCCAAGAACCAAGAGAGATACAATTCTCACA
*
12775 TAAATAAGTTTTTAATTGAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATG
66 TAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATG
* *
12840 ATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAGGGAATGGATCGTCATGAATACTT
131 ATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTT
*
12905 TAAGGAACTGAAGTTATA
196 TAAGGAACCGAAGTTATA
* *
12923 AAAGAACTTGTAAAAGTCTGACAAGTTCCAAAGTTCATCCAAGAACCAAAGAGAGATACAATTCT
1 AAAGAACTCGTAAAAGTTTGACAAGTT-C-AAGTTC-TCCAAGAACC-AAGAGAGATACAATTCT
* * * * *
12988 CATATAAATAAGTTTTTAATTCAAAGACCAAGAGCAGGTTAC-AAATGACAACCTATTTGGACCA
62 CACATAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCA
* * * * * * * *
13052 TATGATGCGATTTCTCAAGCCTGAAATGGTCGAAAAGTTGCTCGAAGGAATGGATCGTCATGAAT
127 AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAAT
13117 ACTTTAAGGAACCGAAGTTATA
192 ACTTTAAGGAACCGAAGTTATA
13139 AAAGAACTCGTAAAAGTTTGACAAGTT
1 AAAGAACTCGTAAAAGTTTGACAAGTT
13166 TGATAGTTCA
Statistics
Matches: 917, Mismatches: 133, Indels: 64
0.82 0.12 0.06
Matches are distributed among these distances:
206 2 0.00
207 173 0.19
208 347 0.38
209 4 0.00
210 1 0.00
211 2 0.00
212 1 0.00
213 1 0.00
215 9 0.01
216 324 0.35
217 53 0.06
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (213 bp):
AAAGAACTCGTAAAAGTTTGACAAGTTCAAGTTCTCCAAGAACCAAGAGAGATACAATTCTCACA
TAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATG
ATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTT
TAAGGAACCGAAGTTATA
Found at i:15552 original size:216 final size:214
Alignment explanation
Indices: 14875--18508 Score: 2541
Period size: 216 Copynumber: 17.3 Consensus size: 214
14865 CGTATCAGGT
* * * *
14875 AATGTCTCGATGGAAAGGATCATCTTGAATACTTTAAGGAACCAAAGTTA-AAATAGAACTCGTA
1 AATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA-AGAACTCGTA
* * *
14939 AAAGTTTG---A---CAAGTTCGTCCTAGAACCAAGAGAGATACAATTCTCACATAAATGAGTTT
65 AAAGTTTGACAAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATAAGTTT
* * * **
14998 TTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACTGTTTGGACCCAATGACACGATTTCT
130 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCT
15063 CGAGCATGGAATGCTCGAAA
195 CGAGCATGGAATGCTCGAAA
* * * ** * * *
15083 AGTAG-CTTGAAGGAATGGATCGTCTTGAGTACTTTAAGGAACTAAAGTTAGAAAAGAATTCATA
1 AAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * * *
15147 AAAGTCTAACAAGTTCCAAAGTTCGTCTAAGAACCAAGAGAGAT-CAATTCTCATGTAAATAAGT
65 AAAGTTTGACAAGTT-C-AAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATAAGT
* * * *
15211 TTTTAATTCAAAGAGCAAAAGCTGGTTAC-AAATGACAACCTATTTGGACCAAATGATGCGATTT
128 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTT
*
15275 CTCGAGTATGGAATGCTCGAAA
193 CTCGAGCATGGAATGCTCGAAA
* * *
15297 AATAG-CTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCATA
1 AAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * * *
15361 AAAGTTTGACAAGTTCGAAAGTTCGTTCAAGAACCAGGAGAGATACAATTTTCAGGTAAATAAGT
65 AAAGTTTGACAAGTTC--AAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATAAGT
* **
15426 TTTTAATT-AAATGACCAAAAGTTGTTTACAAAAAGATGAACTATTTGGACCAAATGATGCGATT
128 TTTTAATTCAAA-GACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATT
* * * **
15490 TCTTGATCATGGAATGTTCGAGT
192 TCTCGAGCATGGAATGCTCGAAA
* * * ** * **
15513 AATGTCTCGAAGGAAAGGGTCATCTTGAACGCTTTAAGGAACCGAAGTTAGAAAAGAACTTTTAA
1 AATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
* * * *
15578 AAGTTTG---A---CAAGTTCGTCCAAGAAACATGAGAGATACAATTCACACGTAAATAAGATTT
66 AAGTTTGACAAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATAAGTTTT
*
15637 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATTCGATTTCTC
131 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
* *
15702 AAGCATGGAATGTTCGAAA
196 GAGCATGGAATGCTCGAAA
* * * * * * *
15721 AATAG-CTTGAAGGAATGAATCGTCCTAAATACATTAAGGAACTGAAGTTAAAAAAGAACTCGTA
1 AAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* *
15785 AAAGTTTG-CAAGTTC-----C-TCCTAGAACCAAGAGAGATACAATTCTCACATAAATAAGTTT
65 AAAGTTTGACAAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATAAGTTT
* * **
15843 TTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATGTTGTAATTTCT
130 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCT
* *
15908 TGAGCATGGAATGTTCGAAA
195 CGAGCATGGAATGCTCGAAA
* * * * * * * *
15928 AATAG-CTTGAGGGAATGGATCGTCCTAAATACTTTAACGAACTGATGTTATAAAAGAATTCGTA
1 AAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * *
15992 AAAGTCTGACAAGTTCCAAAGTTTGTCCAAGAACCAAAGAGAGATACAATTCTCATGTAAATAAG
65 AAAGTTTGACAAGTT-C-AAGTTCGTCCAAGAACC-AAGAGAGATACAATTCTCACGTAAATAAG
* * * * *
16057 TTTTTAATTTAAAGAGCAAAAGCTGGTTAC-AAATGACAACCTATTTGGACCAAATGATGCGATT
127 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATT
* *
16121 TCTCGAGCCTAGAATGCTCGAAA
192 TCTCGAGCATGGAATGCTCGAAA
*
16144 AAT-TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGT
1 AATGT-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTCGT
* * *
16207 AAAAGTTTGACAAGTTCGATAGTTTGTCCAAGAACCAGGAGAGATA-ATTTTCTCACGTAAATAA
64 AAAAGTTTGACAAGTTC-A-AGTTCGTCCAAGAACCAAGAGAGATACA-ATTCTCACGTAAATAA
* * * *
16271 GTTTTTAATT-AAAAACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGTGAT
126 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGAT
*
16335 TTC-AGAGC---G--TG---G---
191 TTCTCGAGCATGGAATGCTCGAAA
* *
16347 AATGT-T---A--AA-GGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAA
1 AATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
* * * * * * * * **
16405 AAATTTGACAAGTTTGGATGTTCATCTAAGAACCAAGAGAGATACAATTCTCATGTATATAGGGA
66 AAGTTTGACAAG-TT-CAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATAAGTT
* * *
16470 TTGAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGTGATTTC
129 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTC
* * * **
16535 CCGAGCATGGAATGTTTGGGA
194 TCGAGCATGGAATGCTCGAAA
* * * * * * *
16556 AATGTCCCGAAGGAA---A----CTTAAATACTTTAAGGAATCGGAGTTAAAAAATAACTAGTAA
1 AATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
* * * *
16614 AATTTTGACAAGTTC----T--TCCTAGAACCAAGAGAGATACAATTTTCAGGTAAATAAGTTTT
66 AAGTTTGACAAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATAAGTTTT
* * ** * * * * *
16673 TAA--CAAAATGA--AAAACTATCTGGACCAAATG--ATACGATTT---CTC-GA-GCATG-GAA
131 TAATTC-AAA-GACCAAAAGT-TGTTTACAAAATGACAAACTATTTGGAC-CAAATG-ATGCGAT
* *
16726 TACTCGA--A--AAATTGCTCGAAGA
191 TTCTCGAGCATGGAA-TGCTCGAA-A
** ** * *
16748 AATGGATCGACTTGAAT--A-C-T-TTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTT-TG
1 AATGTCTCGA-AGGAATGGATCGTCTT---GAAT---ACTT-T-AAGGAAC-CG---AAGTTAT-
* **** * *
16807 ACAAGTTAGGAAGTTCG-ACAAAGAACCAGGATAGATT-ATA-TTC-TCACATA-AA--TA-AG-
52 A-AA---A-GAA-CTCGTA-AAAGTTTGA-CA-AG-TTCA-AGTTCGTC-CA-AGAACCAAGAGA
** ** ** * * ** *
16863 TTTTTAATT-GAAAG-ACCAA-AAGTTGTTT-A--CAAAATGA-CAAACAATT-TGGACCAAATG
104 GATACAATTCTCACGTA--AATAAGTT-TTTAATTC-AAA-GACCAAA-AGTTGTTTACAAAATG
** * ** *
16920 ---ATGTGACTT---CCCGA-GCATG-GATTGT-TCG-G---GAAATGTCTCGAAGGA
163 ACAAACT-ATTTGGACCAAATG-ATGCGATT-TCTCGAGCATGGAATG-CTCGAA--A
** *** * *
16965 AA-GGATCGCCTTGAAT--A-C-T-TTAAGCAACTAAAGTTATAA--AA--GAAGTCAT--AA-A
1 AATGTCTCG-AAGGAATGGATCGTCTT--G-AA-T--ACTT-TAAGGAACCGAAGTTATAAAAGA
* * * **
17017 A---------GTTTAACAAGTT--TGTTC-T--AA-AACCAAGAGAGATTCAATTCTCATATAAA
58 ACTCGTAAAAGTTTGACAAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAA
* ** * * *
17067 TAAGTTTTTAATTCAAAAAGAAAAAGTAGTTTACAAAATGAAAAACTATTTGGACTAAATGATGC
123 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGC
*
17132 GATTTCTCGAGCATGGAATGTTCGAAA
188 GATTTCTCGAGCATGGAATGCTCGAAA
* * * ** * *
17159 AATAG-CTTGAAGGAATGGATCATCTTGAATACTTTATGGAACTAAAGTTAGAAAAGAACTCGAA
1 AAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * * *
17223 AAAGTTTGACAAGTTCCAAAGTTCGTCTATGAACCAAAGAGAGATACAATTCTCATGTAAATAAA
65 AAAGTTTGACAAGTT-C-AAGTTCGTCCAAGAACC-AAGAGAGATACAATTCTCACGTAAATAAG
* * * * * * * *
17288 ATTTTAATTCAAAGAGCAAAAGCTGGTTAC-AAATGGCAACCTATTTGGACCACATGATGGGATT
127 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATT
* *
17352 TCTCAAGCATGGAATGTTCGAAA
192 TCTCGAGCATGGAATGCTCGAAA
** * * *
17375 AATAACTTC-AAGGAATGGATCGTCTT-AACTACTTTAAGAAACTGAAGTTATAAAAAAACTCGT
1 AATGTC-TCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACCGAAGTTATAAAAGAACTCGT
* * * *
17438 AAAAGTCTGACAAGTTCCAAAGTTTGTCCAAGAACTAAAGAGAGATACAATTCTCATGTAAATAA
64 AAAAGTTTGACAAGTT-C-AAGTTCGTCCAAGAAC-CAAGAGAGATACAATTCTCACGTAAATAA
* * * *
17503 GTTTTTAATTCAAATACCAAAAGTTGGTTAC-AAATGACAACCTATTTGGACGAAATGATGCGAT
126 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGAT
* * * ***
17567 TTCCCGAGCATGGAATGTTTGGGT
191 TTCTCGAGCATGGAATGCTCGAAA
* * * *
17591 AATGTCTCGAAGGAAAGGATCGTCTTGAATGCTTTAAGGAATCGAAGTTAAAAAAGAACTCGTAA
1 AATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
* * **
17656 AAGTTTGACAAG-T----TT-GTCCTAGAACCAAGAGAGATACAATTCTCACATAAATAAAATTT
66 AAGTTTGACAAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATAAGTTTT
* * * * *
17715 TAATTCAAAGACCAAAAGTAGTTTGCAAAATGACAAACTATTTGGACTAAATTATGTGATTTCTC
131 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
* *
17780 GAGCATGGAATGTTCGTAA
196 GAGCATGGAATGCTCGAAA
* * * * *
17799 AATAG-CTTGAAGGAATGGATCGTTTTGAATACTTTAAGCAACTGAAGTTATAAAAGAACTTGTA
1 AAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * * *** *
17863 AAAGTTTGAAAAGTTCCAAAGTTTGTCCATGAAATGAGAGAGATACAATTCTCATGTAAA-ATAG
65 AAAGTTTGACAAGTT-C-AAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATA-AG
* * *
17927 TTTTTAATTCAAAGACCAAAAGCTGGTTAC-AAATGACAACCTATTTGGACCAAATGATGCGATT
127 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATT
*
17991 TCTCGAGCATGGAATGCTCAAAA
192 TCTCGAGCATGGAATGCTCGAAA
* *
18014 AAT-TGCTCAAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
1 AATGT-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
* * * * *
18078 AAAGTTTGAGAAGTTCAAAAGTTCGTTCAAGAA-CAATGAAAGATATAATT-TCAGGTAAATAAG
65 AAAGTTTGACAAGTTC--AAGTTCGTCCAAGAACCAA-GAGAGATACAATTCTCACGTAAATAAG
* * * *
18141 TTTTTAATTCAATGACCAAAAGTTGTTTAAAAAATGACGAACTATTTGGACCAAATGATGTGATT
127 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATT
* * * **
18206 TCTAGAGCATGGAATGTTTGTGA
192 TCTCGAGCATGGAATGCTCGAAA
* * * * * * *
18229 AATGTCTTGAAGGAAAGGATCATGTTGAATACTTTAAGGAGCCGAAGTTATAAAATAACTCATAA
1 AATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
* **
18294 AAGTTTG---A---CAAGTTCGT-CAAGAACCATA-AGAGATACAATTCTCATGTAAATAAGGAT
66 AAGTTTGACAAGTTCAAGTTCGTCCAAGAACCA-AGAGAGATACAATTCTCACGTAAATAAGTTT
* * *
18351 TTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAGCAAATGATGCGATTTCT
130 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCT
** ***
18416 CGAGCATACAATG-TCCGGGT
195 CGAGCATGGAATGCT-CGAAA
* * *
18436 AATGTCTCGAAGGAAAGGATCGTCTTGAATACTTTAAGGAATCGAAGTTAAAAAAGAACTCGTAA
1 AATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
18501 AAGTTTGA
66 AAGTTTGA
18509 ACATTTTGAA
Statistics
Matches: 2758, Mismatches: 462, Indels: 412
0.76 0.13 0.11
Matches are distributed among these distances:
181 3 0.00
182 1 0.00
183 1 0.00
184 2 0.00
185 15 0.01
186 12 0.00
187 17 0.01
188 2 0.00
189 5 0.00
190 4 0.00
191 4 0.00
192 17 0.01
193 14 0.01
194 19 0.01
195 10 0.00
196 111 0.04
197 68 0.02
198 17 0.01
199 13 0.00
200 11 0.00
201 44 0.02
202 2 0.00
203 11 0.00
204 4 0.00
206 19 0.01
207 395 0.14
208 371 0.13
209 67 0.02
210 3 0.00
211 3 0.00
212 8 0.00
213 14 0.01
214 207 0.08
215 426 0.15
216 702 0.25
217 124 0.04
218 4 0.00
219 2 0.00
220 2 0.00
221 3 0.00
222 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (214 bp):
AATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
AAGTTTGACAAGTTCAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCACGTAAATAAGTTTT
TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
GAGCATGGAATGCTCGAAA
Found at i:16064 original size:424 final size:423
Alignment explanation
Indices: 14880--18508 Score: 3563
Period size: 424 Copynumber: 8.7 Consensus size: 423
14870 CAGGTAATGT
* * * **
14880 CTCGATGGAAAGGATCATCTTGAATACTTTAAGGAACCAAAGTTA-AAATAGAACTCGTAAAAGT
1 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAA-AGAACTCGTAAAAGT
* * ** *
14944 TTGACAAGTTCGTCCTAGAACCAAGAGAGATACAATTCTCACATAAATGAGTTTTTAATTCAAAG
65 TTGACAAGTTCCTCCAAGAACCAAGAGAGATACAATTCTCATGTAAATAAGTTTTTAATTCAAAG
* * * **
15009 ACCAAAAGTAGTTTACAAAATGACAAACTGTTTGGACCCAATGACACGATTTCTCGAGCATGGAA
130 ACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAA
* * * * * *
15074 TGCTCGAAAAGTAGCTTGAAGGAATGGATCGTCTTGAGTACTTTAAGGAACTAAAGTTAGAAAAG
195 TGTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAG
* * * * *
15139 AATTCATAAAAGTCTAACAAGTTCCAAAGTTCGTCTAAGAACCAAGAGAGAT-CAATTCTCATGT
259 AACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCATGT
* * * *
15203 AAATAAGTTTTTAATTCAAAGAGCAAAAGCTGGTTAC-AAATGACAACCTATTTGGACCAAATGA
324 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * *
15267 TGCGATTTCTCGAGTATGGAATGCTCGAAAAATAG
389 TGTGATTTCTCGAGCATGGAATGTTCGAAAAATAG
* * * *
15302 CTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCATAAAAGTT
1 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT
* * * *
15367 TGACAAGTTCGAAAGTTCGTTCAAGAACCAGGAGAGATACAATTTTCAGGTAAATAAGTTTTTAA
66 TGACAAGTTC-------C-TCCAAGAACCAAGAGAGATACAATTCTCATGTAAATAAGTTTTTAA
* ** *
15432 TT-AAATGACCAAAAGTTGTTTACAAAAAGATGAACTATTTGGACCAAATGATGCGATTTCTTGA
123 TTCAAA-GACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGA
* ** * * * ** *
15496 TCATGGAATGTTCGAGTAATGTCTCGAAGGAAAGGGTCATCTTGAACGCTTTAAGGAACCGAAGT
187 GCATGGAATGTTCGAAAAATG-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* ** * *
15561 TAGAAAAGAACTTTTAAAAGTTTG---A----C-AAGTTCGTCCAAGAAACATGAGAGATACAAT
251 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGATACAAT
* * *
15618 TCACACGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGA
316 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGA
*
15683 CCAAATGAT-TCGATTTCTCAAGCATGGAATGTTCGAAAAATAG
381 CCAAATGATGT-GATTTCTCGAGCATGGAATGTTCGAAAAATAG
* * * * * *
15726 CTTGAAGGAATGAATCGTCCTAAATACATTAAGGAACTGAAGTTAAAAAAGAACTCGTAAAAGTT
1 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT
* **
15791 TG-CAAGTTCCTCCTAGAACCAAGAGAGATACAATTCTCACATAAATAAGTTTTTAATTCAAAGA
66 TGACAAGTTCCTCCAAGAACCAAGAGAGATACAATTCTCATGTAAATAAGTTTTTAATTCAAAGA
* * ** *
15855 CCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATGTTGTAATTTCTTGAGCATGGAAT
131 CCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAAT
* * * * * *
15920 GTTCGAAAAATAGCTTGAGGGAATGGATCGTCCTAAATACTTTAACGAACTGATGTTATAAAAGA
196 GTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGA
* * *
15985 ATTCGTAAAAGTCTGACAAGTTCCAAAGTTTGTCCAAGAACCAAAGAGAGATACAATTCTCATGT
260 ACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACC-AAGAGAGATACAATTCTCATGT
* * * * *
16050 AAATAAGTTTTTAATTTAAAGAGCAAAAGCTGGTTAC-AAATGACAACCTATTTGGACCAAATGA
324 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* * * * *
16114 TGCGATTTCTCGAGCCTAGAATGCTCGAAAAATTG
389 TGTGATTTCTCGAGCATGGAATGTTCGAAAAATAG
* *
16149 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC-CAATGTTATAAAAGAACTCGTAAAAGT
1 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAA-GTTATAAAAGAACTCGTAAAAGT
* * * *
16213 TTGACAAGTTCGATAGTTTGTCCAAGAACCAGGAGAGATA-ATTTTCTCACGTAAATAAGTTTTT
65 TTGACAAGTTC--------CTCCAAGAACCAAGAGAGATACA-ATTCTCATGTAAATAAGTTTTT
* * * * *
16277 AATT-AAAAACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGTGATTTC-AG
121 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCG
* * *
16340 AGC---G--TG---G---AATG-T--TA--AA-GGATCATCTTGAATACTTTAAGGAACCGAAGT
186 AGCATGGAATGTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* * *** * * *
16388 TATAAAAGAACTCATAAAAATTTGACAAGTTTGGATGTTCATCTAAGAACCAAGAGAGATACAAT
251 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGATACAAT
* * ** * *
16453 TCTCATGTATATAGGGATTGAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGA
316 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGA
* * **
16518 CCAAATGATGTGATTTCCCGAGCATGGAATGTTTGGGAAAT-G
381 CCAAATGATGTGATTTCTCGAGCATGGAATGTTCGAAAAATAG
* * * * * * *
16560 TCCCGAAGGAA---A----CTTAAATACTTTAAGGAA-TCGGAGTTAAAAAATAACTAGTAAAAT
1 -CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAG
* * * *
16617 TTTGACAAGTTCTTCCTAGAACCAAGAGAGATACAATTTTCAGGTAAATAAG--TTT--TT---A
64 TTTGACAAGTTCCTCCAAGAACCAAGAGAGATACAATTCTCATGTAAATAAGTTTTTAATTCAAA
* *
16675 -A-CAAAA--TG--------A--A-AAACTATCTGGACCAAATGATACGATTTCTCGAGCATGGA
129 GACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGA
** * *
16725 ATACTCGAAAAATTGCTCGAAGAAATGGATCGACTTGAATACTTTAAGGAA-TCGAAGTTATAAA
194 ATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAA
*** * * * * *
16789 AGAACTCGTAAAAGTTTGACAAGTTAGGAAGTTCGACAAAGAACCAGGATAGATTA-TATTCTCA
257 AGAACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGA-TACAATTCTCA
** * *
16853 CATAAATAAGTTTTTAATTGAAAGACCAAAAGTTGTTTACAAAATGACAAACAATTTGGACCAAA
321 TGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAA
* * * **
16918 TGATGTGACTTCCCGAGCATGGATTGTTCGGGAAAT-G
386 TGATGTGATTTCTCGAGCATGGAATGTTCGAAAAATAG
* * * * * *
16955 TCTCGAAGGAAAGGATCGCCTTGAATACTTTAAGCAACTAAAGTTATAAAAGAAGTCATAAAAGT
1 -CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGT
* ** * * *
17020 TTAACAAGTTTGTTCTAA-AACCAAGAGAGATTCAATTCTCATATAAATAAGTTTTTAATTCAAA
65 TTGACAAG-TTCCTCCAAGAACCAAGAGAGATACAATTCTCATGTAAATAAGTTTTTAATTCAAA
* ** * * *
17084 AAGAAAAAGTAGTTTACAAAATGAAAAACTATTTGGACTAAATGATGCGATTTCTCGAGCATGGA
129 GACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGA
* * * * *
17149 ATGTTCGAAAAATAGCTTGAAGGAATGGATCATCTTGAATACTTTATGGAACTAAAGTTAGAAAA
194 ATGTTCGAAAAAT-GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAA
* * *
17214 GAACTCGAAAAAGTTTGACAAGTTCCAAAGTTCGTCTATGAACCAAAGAGAGATACAATTCTCAT
258 GAACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACC-AAGAGAGATACAATTCTCAT
** * * * * * *
17279 GTAAATAAAATTTTAATTCAAAGAGCAAAAGCTGGTTAC-AAATGGCAACCTATTTGGACCACAT
322 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT
* * *
17343 GATGGGATTTCTCAAGCATGGAATGTTCGAAAAATAA
387 GATGTGATTTCTCGAGCATGGAATGTTCGAAAAATAG
* *
17380 CTTC-AAGGAATGGATCGTCTT-AACTACTTTAAGAAACTGAAGTTATAAAAAAACTCGTAAAAG
1 C-TCGAAGGAATGGATCGTCTTGAA-TACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAG
* *
17443 TCTGACAAGTTCCAAAGTTTGTCCAAGAACTAAAGAGAGATACAATTCTCATGTAAATAAGTTTT
64 TTTGACAAGTTCC--------TCCAAGAAC-CAAGAGAGATACAATTCTCATGTAAATAAGTTTT
* * * * *
17508 TAATTCAAATACCAAAAGTTGGTTAC-AAATGACAACCTATTTGGACGAAATGATGCGATTTCCC
120 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTC
* *** * *
17572 GAGCATGGAATGTTTGGGTAATGTCTCGAAGGAAAGGATCGTCTTGAATGCTTTAAGGAA-TCGA
185 GAGCATGGAATGTTCGAAAAATG-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GA
* *
17636 AGTTAAAAAAGAACTCGTAAAAGTTTGACAAG-T------TT-GTCCTAGAACCAAGAGAGATAC
248 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGATAC
** ** * *
17693 AATTCTCACATAAATAAAATTTTAATTCAAAGACCAAAAGTAGTTTGCAAAATGACAAACTATTT
313 AATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * *
17758 GGACTAAATTATGTGATTTCTCGAGCATGGAATGTTCGTAAAATAG
378 GGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCGAAAAATAG
* * * *
17804 CTTGAAGGAATGGATCGTTTTGAATACTTTAAGCAACTGAAGTTATAAAAGAACTTGTAAAAGTT
1 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT
* * ***
17869 TGAAAAGTTCCAAAGTTTGTCCATGAAATGAGAGAGATACAATTCTCATGTAAA-ATAGTTTTTA
66 TGACAAGTTCC--------TCCAAGAACCAAGAGAGATACAATTCTCATGTAAATA-AGTTTTTA
* * *
17933 ATTCAAAGACCAAAAGCTGGTTAC-AAATGACAACCTATTTGGACCAAATGATGCGATTTCTCGA
122 ATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGA
* * * * *
17997 GCATGGAATGCTCAAAAAATTGCTCAAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGT
187 GCATGGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT
* * * * *
18062 TATAAAAGAACTCGTAAAAGTTTGAGAAGTTCAAAAGTTCGTTCAAGAA-CAATGAAAGATATAA
251 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAA-GAGAGATACAA
* * * *
18126 TT-TCAGGTAAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTAAAAAATGACGAACTATTTGG
315 TTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
* * **
18190 ACCAAATGATGTGATTTCTAGAGCATGGAATGTTTGTGAAAT-G
380 ACCAAATGATGTGATTTCTCGAGCATGGAATGTTCGAAAAATAG
* * * * * * * *
18233 TCTTGAAGGAAAGGATCATGTTGAATACTTTAAGGAGCCGAAGTTATAAAATAACTCATAAAAGT
1 -CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGT
* ** *
18298 TTGACAAGTTCGT-CAAGAACCATA-AGAGATACAATTCTCATGTAAATAAGGATTTAATTCGAA
65 TTGACAAGTTCCTCCAAGAACCA-AGAGAGATACAATTCTCATGTAAATAAGTTTTTAATTCAAA
* * **
18361 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAGCAAATGATGCGATTTCTCGAGCATACA
129 GACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGA
* *** * *
18426 ATGTCCGGGTAATGTCTCGAAGGAAAGGATCGTCTTGAATACTTTAAGGAA-TCGAAGTTAAAAA
194 ATGTTCGAAAAATG-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAGTTATAAA
18490 AGAACTCGTAAAAGTTTGA
257 AGAACTCGTAAAAGTTTGA
18509 ACATTTTGAA
Statistics
Matches: 2650, Mismatches: 423, Indels: 268
0.79 0.13 0.08
Matches are distributed among these distances:
376 24 0.01
377 5 0.00
379 1 0.00
380 1 0.00
382 1 0.00
385 1 0.00
387 2 0.00
388 2 0.00
389 7 0.00
390 2 0.00
391 1 0.00
392 1 0.00
393 2 0.00
394 2 0.00
395 187 0.07
396 2 0.00
397 32 0.01
398 2 0.00
402 70 0.03
403 7 0.00
404 3 0.00
405 47 0.02
406 3 0.00
409 2 0.00
410 1 0.00
411 54 0.02
412 126 0.05
413 3 0.00
415 160 0.06
416 5 0.00
417 1 0.00
418 2 0.00
419 3 0.00
421 57 0.02
422 205 0.08
423 407 0.15
424 548 0.21
425 54 0.02
427 2 0.00
429 5 0.00
430 322 0.12
431 77 0.03
432 159 0.06
433 52 0.02
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (423 bp):
CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT
TGACAAGTTCCTCCAAGAACCAAGAGAGATACAATTCTCATGTAAATAAGTTTTTAATTCAAAGA
CCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGCATGGAAT
GTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAA
CTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCATGTAA
ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATG
TGATTTCTCGAGCATGGAATGTTCGAAAAATAG
Found at i:20125 original size:32 final size:32
Alignment explanation
Indices: 20089--20167 Score: 140
Period size: 32 Copynumber: 2.5 Consensus size: 32
20079 AGCCGAAATT
* *
20089 AATTAGTTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATGTGTTTCAAGTACATGC
20121 AATTAGCTGATTAATGTGTTTCAAGTACATGC
1 AATTAGCTGATTAATGTGTTTCAAGTACATGC
20153 AATTAGCTGATTAAT
1 AATTAGCTGATTAAT
20168 ATATATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (32 bp):
AATTAGCTGATTAATGTGTTTCAAGTACATGC
Found at i:21746 original size:215 final size:212
Alignment explanation
Indices: 21144--21773 Score: 819
Period size: 207 Copynumber: 3.0 Consensus size: 212
21134 AGATCATATC
* * *
21144 ATTTCTCGAGCATGGAATGTTCAAAAAATAGCTTGAAGGAATGGCTCATCTTGAATACTTTAAGA
1 ATTTATCGAGCATGGAATGTTCGAAAAATAGCTTGAAGGAATGGATCATCTTGAATACTTTAAG-
* * * *
21209 AACTAAAGTTAGAAAAGAACTCGTAAAAGCTTGACAAGTTCTAGAGTTCGTCTATGAACCAAAAA
65 AACTAAAGTTA-AAAAGAACTCGTAAAAGTTTGACAAGTTCCA-AGTTCGTC-AAGAACC-AAGA
* * * * *
21274 GAGATACAATTCTCATGTAAATAAGTTTTTAATTCAAAGAGCGAAAGCT-GGTTAC-AAATAATA
126 GAGATACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TAGTTTACAAAATGACA
* *
21337 ACCTATTTAGACCAAATGATGCG
190 AACTATTTGGACCAAATGATGCG
* * * *
21360 ATTTATCAAGCATGAAATGTTTGAAAAATAGCTTGAAGGAATGGATCATCTTAAATACTTTAAGG
1 ATTTATCGAGCATGGAATGTTCGAAAAATAGCTTGAAGGAATGGATCATCTTGAATACTTTAA-G
* * ** *
21425 AACTGAAGTTAAGAAAAAACTTATAAAAGTTTG-CAAGTT-C--G-TC--CTAGAACCAAGAGAG
65 AACTAAAGTTAA-AAAGAACTCGTAAAAGTTTGACAAGTTCCAAGTTCGTCAAGAACCAAGAGAG
** *
21483 ATACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAGAGTAGTTTACAAAATGACAAACT
129 ATACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACT
*
21548 ATTTGGACCGAATGATGCG
194 ATTTGGACCAAATGATGCG
* * * *
21567 ATTTTTTGAGCATGGAATGGTCGAAAAATAGCTTGAAGGAATGGATCGTCTTGAATACTTTAATG
1 ATTTATCGAGCATGGAATGTTCGAAAAATAGCTTGAAGGAATGGATCATCTTGAATACTTTAA-G
21632 AACTAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTCAAGAACCAAGAGA
65 AACTAAAGTTA-AAAAGAACTCGTAAAAGTTTGACAAGTTCC-AAGTTCGTCAAGAACCAAGAGA
21697 GATACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAAC
128 GATACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAAC
21762 TATTTGGACCAA
193 TATTTGGACCAA
21774 GAGTGATACA
Statistics
Matches: 356, Mismatches: 45, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
205 1 0.00
206 50 0.14
207 114 0.32
208 8 0.02
209 1 0.00
210 2 0.01
211 1 0.00
212 1 0.00
213 2 0.01
215 93 0.26
216 82 0.23
217 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (212 bp):
ATTTATCGAGCATGGAATGTTCGAAAAATAGCTTGAAGGAATGGATCATCTTGAATACTTTAAGA
ACTAAAGTTAAAAAGAACTCGTAAAAGTTTGACAAGTTCCAAGTTCGTCAAGAACCAAGAGAGAT
ACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAACTAT
TTGGACCAAATGATGCG
Found at i:22291 original size:214 final size:214
Alignment explanation
Indices: 21790--22497 Score: 769
Period size: 214 Copynumber: 3.3 Consensus size: 214
21780 TACAATTCTT
* * ** * **
21790 AAGACCAAAAGTAGTTTACAAAATGACAAA-TAGTTTGGACCTAATGATGTGACTTCCCGAGCAT
1 AAGACCAAAAGTTGTTTACAAAATGACAAACTA-TTTGGACCAAATGATACGATTTCTTGAGCAT
* * * ** ** * * ***
21854 TGAATGTTTGGGAAAT-GTCTCGAAGGAA-AGGATTGTGTTGAATACTGTAAGGAACCAAAGTTA
65 GGAATGCTAGAAAAATAG-CTCGAAGGAATA-GATCATCTTGAATACTTTAAGGAAATGAAGTTA
* * *
21917 TAAAAGAGCTCGTAAAAGTTTGACAAGTT-C---G--TCTTAGAAGCAAGAGAGATACAATTCTC
128 TAAAAGAACTCGTAAAAGTTTGACAAGTTCCAAAGTTTCTAAGAACCAAGAGAGATACAATTCTC
*
21976 ACATAAATAAATTTTTAATTCA
193 ACGTAAATAAATTTTTAATTCA
* * * *
21998 AAGACCAAAAGTAGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCTCGAGAATG
1 AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATACGATTTCTTGAGCATG
* * *
22063 GAATGTTAGAAAAATAGCTTGAAGGGATAGATCATCTTGAATACTTTAAGGAAATGAAGTTATAA
66 GAATGCTAGAAAAATAGCTCGAAGGAATAGATCATCTTGAATACTTTAAGGAAATGAAGTTATAA
* *
22128 AAGAACTCGTAAAAGTTTGACATGTTCCAAAGTTTTTCTAAGAACCAAGAGAGATACAATTCTTA
131 AAGAACTCGTAAAAGTTTGACAAGTTCCAAAG--TTTCTAAGAACCAAGAGAGATACAATTCTCA
* *
22193 TGTAAATAAGTTTTTAATTCA
194 CGTAAATAAATTTTTAATTCA
** *
22214 AAGACC-AAAGTTGGCTAC-AAATGAC-AACTTATTTGGACGAAATGATACGATTTCTTGAGCAT
1 AAGACCAAAAGTTGTTTACAAAATGACAAAC-TATTTGGACCAAATGATACGATTTCTTGAGCAT
* * * *
22276 GGAATGCTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG-AATCGAAGTTAT
65 GGAATGCTAGAAAAATAGCTCGAAGGAATAGATCATCTTGAATACTTTAAGGAAAT-GAAGTTAT
* * * * *
22340 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGGGGAGATACAATTCT
129 AAAAGAACTCGTAAAAGTTTGACAAGTTCCAAAGTT--TCTAAGAACCAAGAGAGATACAATTCT
*
22405 CACGTAAATAACTTTTTAATTCA
192 CACGTAAATAAATTTTTAATTCA
* * * *
22428 ATGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA-AGTGATTTCCTGTGCAT
1 AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATA-CGATTTCTTGAGCAT
22492 GGAATG
65 GGAATG
22498 TTCGGGAAAT
Statistics
Matches: 425, Mismatches: 56, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
208 129 0.30
209 5 0.01
212 3 0.01
213 6 0.01
214 169 0.40
215 20 0.05
216 90 0.21
217 3 0.01
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.28
Consensus pattern (214 bp):
AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATACGATTTCTTGAGCATG
GAATGCTAGAAAAATAGCTCGAAGGAATAGATCATCTTGAATACTTTAAGGAAATGAAGTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTCCAAAGTTTCTAAGAACCAAGAGAGATACAATTCTCACG
TAAATAAATTTTTAATTCA
Found at i:33155 original size:208 final size:208
Alignment explanation
Indices: 32530--42649 Score: 8769
Period size: 216 Copynumber: 48.0 Consensus size: 208
32520 TTTCCCGAGT
** * * * ** *
32530 ATGGAATGTTCGAAAAATAG-CTTGAAGGAATGGATCGTCATGAACACTTTAAGGAAGTGAAATT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
* * * * * * *
32594 ATAAAAGAAGTCGTAAAAGTTTGACAAGTTCGTTCGAGAACAAGGAGAGATACAATTCTCATGTA
65 ATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTA
* * * * * *
32659 AATTAGTTTTTAATTCAACGACCAAAAGCTGGTTA-AAAATGACAAACTATTTGGTCCAAATGAT
130 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAA
*
32723 GCGA-TTTCTCGAT-T
195 GCGATTTTCT-G-TGC
* * * * * *
32737 ATGGAATGCTCGGTAAATAG-ATCGATGGAATGGATTGTCTTGAATACTTTAAGGAACTGAAGTT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
* * *
32801 ATAAAAGAACTCGTAAAAGTTTGACGATTTCGAATGTTTGTCCAAGAACGAGGAGAGATACAATT
65 ATAAAAGAACTCGTAAAAGTTTGA--A-----AA-GTTCGTCCAAGAACCATGAGAGATACAATT
* ** * * *
32866 CACACAAAAATAAGTTTTTAATTCAATGACCAAAATTTGTTTACAAAATGACAAACTATTCGGAC
122 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
*
32931 CTAATGAAGCGATTTTCTGTGC
187 CAAATGAAGCGATTTTCTGTGC
* * * *
32953 ATGGAATGTTCGGGAAATGTCTTGAAGGAAAGGATCGTGTTGAATACTTCAAGGAACAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * *
33018 TAAAAGAACTCATAAAAGTTTGAAAAGTTCGTCCAAGAACCATGACAAATATAATTCTCACGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
*
33083 ATAAGTTTTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
*
33148 TGATTTTCTGTGC
196 CGATTTTCTGTGC
* * * * * * *
33161 ATGGAATGTTCGAGAAATGTCTCGAAAGAAAGGGTCGTGTTGAATACTTTAAGCAATAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * *
33226 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGTCTAAGAACCATTAAAGATACAACTT-TCACGTA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAA-TTCTCACGTA
* *
33290 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-AAAATGACAAACTATTTAGACCAAATGAT
130 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAA
* **
33354 GCGATTTCCCATGC
195 GCGATTTTCTGTGC
*** ** * * * *
33368 ATGGAAT-TTTTAGAAATGTCT--AAGGAATGGATCACCTTTAATAGTATAAGGAACCGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* *
33430 TAAAAGAACTCGTAAAAATTTGCAAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGATACAATTC
66 TAAAAGAACTCGTAAAAGTTTG--AA------AAGTTCGTCCAAGAACCATGAGAGATACAATTC
** ***
33495 TCACGTAAATAAGGATTTAATTGGTAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACC
123 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACC
* *
33560 AAATGATGCGA-TTTCTCGAGC
188 AAATGAAGCGATTTTCT-GTGC
* ** *
33581 ATGGAATGTTTGAAAAATAG-CTTC-AAGGAATGGATCATCTTGAATACTTTAAGGAACTA-AAG
1 ATGGAATGTTCGGGAAAT-GTC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AGAAG
* ** * * * *
33643 TTATAAAAGTACTCGTAAAAGCATGACAAGTTCTTAAGTTCATTCAAGAACCAAGAGGGATACCA
63 TTATAAAAGAACTCGTAAAAGTTTGAAAAGTTC----G-TC---CAAGAACCATGAGAGATACAA
* * * * * * * *
33708 TTATCATGTAAATAACTTTCTAATCCAAAGACCAAAA-TCTGGTTAC-GAATGACAACCTATTTG
120 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT-TGTTTACAAAATGACAAACTATTTG
* *
33771 GACCAAATGAGGCGATTTAT-TGAGC
184 GACCAAATGAAGCGATTT-TCTGTGC
* * * * * *** * *
33796 CTAGAATGCTC-TGAAA-AT-T----GG-ACCAAT--T-TTGACA-A-GTTATA--AA-AGAACT
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGA-ATACTTTA-AGGAACAGAAGT
** * * * * *
33845 CCTAAAAG--TTTG-ACAAGTTCG-AAAGTTCGTCCAAGAACCAGGAGAGATACAATTCTCACGT
64 TATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGT
* * * *
33906 AGATAAGATTTTAATTCAATGACCAAAAGTTGTTTACAAAATTACAAACTATTTGGACCAAATGA
129 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
* *
33971 AGCGATTTCCCGTGC
194 AGCGATTTTCTGTGC
* * * * * * *
33986 ATGGAATGTTTGGGAAATGTCTCAAAGGAAAGGATCGTGTTGAATAATTGAAGGAACCGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * *
34051 TAAATGAACTCTTAAATGTTTGACAAGTAT-GTCCAAGAACCATGAGAGATACAATTCTCACGTA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGT-TCGTCCAAGAACCATGAGAGATACAATTCTCACGTA
* * **
34115 AATAAGCTTTTAACTT-AAAGACCAAAAAGTTGTTTACAGAATGACAAACTATTCAGACCAAAT-
130 AATAAGTTTTTAA-TTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATG
* * * *
34178 AATACGATTTCCAGAGC
193 AA-GCGATTTTCTGTGC
** *** * *
34195 ATGGAATGTTCGGGAAAGTGT-TTAAAGGAAACAATCGTCTTGAATTCTTTATA-GAACCGAAGT
1 ATGGAATGTTCGGGAAA-TGTCTCGAAGGAATGGATCGTCTTGAATACTTTA-AGGAACAGAAGT
* * *
34258 TATAAAAGAACTCGTAAAAATTTGACAAGTTTGGGAGTTCATCCAAGAACCAAGAGAGATACAAT
64 TATAAAAGAACTCGTAAAAGTTTGA-AA-------AGTTCGTCCAAGAACCATGAGAGATACAAT
* * * * ** *
34323 TATCTCGCAAATGAGGATTTAATT-AGAAAACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
121 TCTCACGTAAATAAGTTTTTAATTCA-AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
* ** * *
34387 ACCAAATGATGTTATTTTCAGAGC
185 ACCAAATGAAGCGATTTTCTGTGC
* * * ** * * * * * *
34411 ATCGAAAGTTTGAAAAATAG-CTTGAAGTAATGAATCGTCGTGAATACTTTTAGGAA-ACGAAAT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACA-GAAGT
* * * * * *
34474 TATAAAAGAAGTCGTAAAAGTTTGACAAGTTCGTCCACGAACAAGGAGAGATACAATTCTCATGT
64 TATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGT
* * * * **
34539 AAATTAGTTTTTAATTCAATGACCAAAAGCTGGTTA-AAAATGACAAACTATTTGGTTCAAAT-A
129 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA
*
34602 ATGCGA-TTTCTAGAGC
194 A-GCGATTTTCT-GTGC
* * * * * * *
34618 ATGGAATGCTCGGTAAATAG-CTCGATGGAATGGATCATCTTGAATACTGTAAGAAACCGAAGTT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
**
34682 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAAAAGAATGAGGAGAGATA
65 ATAAAAGAACTCGTAAAAGTTTG--AA-----AA-GTTCGTCCAAG--AACCAT---GAGAGATA
* * *
34747 CAATTCTCACGAAAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTACAAAATGAAAAACTATT
117 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* *
34812 TGGACCAAATGAAGTGATGTTCTGTGC
182 TGGACCAAATGAAGCGATTTTCTGTGC
* * * *
34839 ATGGAATGCTCGGGAAATGTCTCGAAGGAAAGGATCATGTTGAATACTTTAAGGAACAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * * * *
34904 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGTCCAAGAACCATTACAGATACAATTATTACATAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* * * *
34969 ATAAGTTTTTAAGTCAAAGAACAAAAGTTGTTTACGAAATGACAAACTATTTGGACAAAATGAAG
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
35034 CGATTTTCTGTGC
196 CGATTTTCTGTGC
* * * * *
35047 ATGGAATGTCCGGGAAATGTCTCAAAGGAAAGGATCG-CGTTGAATACATTAAGCAACAGAAGTT
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACAGAAGTT
* * * *
35111 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTCCAAGAACCATTAGAGATACAATTTTCACGGA
65 ATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTA
* * * *
35176 AATATGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGATAAACTGTTTGGACCAAATGAT
130 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAA
* **
35241 GCGATTTCCCATGC
195 GCGATTTTCTGTGC
* * * * *
35255 ATGGAATGTTCGAGAAATGTCTCGAAGGAATGGAACGTCTTGAATACTATAAGGAGCCGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * *
35320 TAAAAGAACTCGTAAAAATTTGAAAAGTTTGGAAGTTTTGTCCAAGAACCAAGAGAGATACAATT
66 TAAAAGAACTCGTAAAAGTTTG--AA------AAG-TTCGTCCAAGAACCATGAGAGATACAATT
* *
35385 CTCACGTAAATAAAG-ATTTAATTGGAAA-ACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
122 CTCACGTAAAT-AAGTTTTTAATT-CAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
* *
35448 ACCAAATGATGCGATTTCTCT-AGC
185 ACCAAATGAAGCGATTT-TCTGTGC
** ** * *
35472 ATGGAATGTTCGAAAAATAG-CTTAAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
* * * *
35536 ATAAAAGAACTCATAAAAGTTTGACAAGTTCCAAAGTTCGTTCAAGAACCAAGAGAGATGCAATT
65 ATAAAAGAACTCGTAAAAGTTTG---A-----AAAGTTCGTCCAAGAACCATGAGAGATACAATT
** * * * * * *
35601 CTCTTGTAAATAACTTTTTAATTGAAAGACCAAACGCTGGTTA-AAAATGACAAACTATTTGGTC
122 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
* * * *
35665 CAAATGATGCTA-TCTCTCGAGC
187 CAAATGAAGCGATTTTCT-GTGC
* ** * *
35687 ATGGAATGCTCGTTAAATAG-CTTGATGGAATGGATCGTCTTGAATACTTTAAGGAATC-GAAGT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAGAAGT
* *
35750 TATAAAAGAACTCGTAAAAAGTTTGACGAGTTCGAATGTTCGTCCAAGAACGAGGAGAGATACAA
64 TATAAAAGAACTCGT-AAAAGTTTGA--A-----AA-GTTCGTCCAAGAACCATGAGAGATACAA
* * * *
35815 TTCTCACGAAAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTAAAAAAAGACAAACTATTTGG
120 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
35880 ACCAAATGAAGCGATTTTCTGTGC
185 ACCAAATGAAGCGATTTTCTGTGC
* * * * * *
35904 ATGGAATGTTTGGGAAATGTCTC----G-A---ATCTTGTTCAATACTTCAAGGAACAAAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * *
35961 TAAAAGAACTCGTAAAAG--T------TT-GTCCAAGAACCATGACAAATACAAATCTCATGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* * *
36017 ATAAGTTTTTAATTCAAAGAACAAAAGTTGGTTAC-AAATGACAAACTATTTGCACCAAATGAAG
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
*
36081 CGATTTTCTGTCC
196 CGATTTTCTGTGC
* * ** *
36094 ATGGAATGTTCGAGAAATGTCTCGAAGGAAAGGATCGGGTTGAATACTTTAAGCAACAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * *
36159 TAAAAGAACTCGTAAAAGTTTGACAAGTTTGTCCAAGAACCATGACAAATACAATTCTCACGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* * * *
36224 ATAAGTTTTTAAGTCAAAGAACAAAAGTTGTTTACGAAATGACAAACTATTTGGACCTAATGAAG
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
36289 CGATTTTCTGTGC
196 CGATTTTCTGTGC
* * * *
36302 ATGGAATGTCCAGGAAATGTCTCGAAGGAAAGGATCG--TTGAATACTTTAAGCAACAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * * * *
36365 TAAAAGAACTCATAAAAGTTTGACAAGTTCGTCCAAGAACCATTAGAGATACAATTTTCATGAAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* *
36430 ATAAGTTTTTAATTCAAAGACCAAAAAGTTGTTTACAAAATGAAAAACTACTTGGACCAAATGAT
131 ATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGA-
* **
36495 A-CGATTTCCCATGC
194 AGCGATTTTCTGTGC
* * * * *
36509 ATGGAATGTTCGAGAAATGTCTCGTAGGAATGGATCATCTTGAATACTATAAGGAACCGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * *
36574 TAAAAGAACTCGTAAAAATTTGAAAAGTTTGGAAGTTCGTCCAAGAACCAAGAAAGATACAATTC
66 TAAAAGAACTCGTAAAAGTTTG--AA------AAGTTCGTCCAAGAACCATGAGAGATACAATTC
* * ** * ** * *
36639 CCATGTAAATAAGGATTTAAATGGAAGACCAAAAGTTATTTACAAAATGATAAACTATTTGGACC
123 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACC
* *
36704 AAATGATGCGA-TTTCTCGAGC
188 AAATGAAGCGATTTTCT-GTGC
* * *** *
36725 ATGGAAGGATCAAAAAATAG-CTTC-AAGGAATGTG-TCGTCTTGAATACTTTAAGGAACTGAAG
1 ATGGAATGTTCGGGAAAT-GTC-TCGAAGGAATG-GATCGTCTTGAATACTTTAAGGAACAGAAG
* * *
36787 TTATAAAAAAACTCGTAAAAGTTTGACAAGTTCCAAAGTTCGTTCAAGAACCAAGAGAGATACAA
63 TTATAAAAGAACTCGTAAAAGTTTG---A-----AAAGTTCGTCCAAGAACCATGAGAGATACAA
* *** * * *
36852 TTCTCATGTAAATGCCTTTTTAATTCAAAGACCAAAAGATGGTTAC-AAATGACAACCTATTTGG
120 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
* *
36916 AGCAAATGATGCGA-TTTCT-TGATC
185 ACCAAATGAAGCGATTTTCTGTG--C
* * * * * * * * *
36940 CTAGAATGCTCTGAAAAT-TGGTCGAAGGAATGGATCGCCTTGAATACTTTAAGGATCCGAAGTT
1 ATGGAATGTTCGGGAAATGT-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
* * * * *
37004 ATTAAAGAACTCGTAAAAGTTTAACATGTTCTAAAGTTTGTCCAAGAACCACGAGAGATACAAGT
65 ATAAAAGAACTCGTAAAAG-TT----TG---AAAAGTTCGTCCAAGAACCATGAGAGATACAATT
* * * *
37069 CTCACGTAAATAAGTTTTTAATTCAATGACAAAAAGTTGTTTACAAAATAACAAACTATTTAGAC
122 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
** *
37134 CAAATGAAGCGATTACCCGTGC
187 CAAATGAAGCGATTTTCTGTGC
** * * * * *
37156 ATGGAATGTTTTGGAAATATCTCGAAGGAAAGGATCGTGTTGAATACTTGAAGGAACCGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * * * * *
37221 TAAATGAACTCGTAGAAGTTTCACAAGTACGTCCAAGAACTATGAGAGATACAACTCTCACGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* * * * *
37286 ATAAGTTTGTAATTCAAAGAACTAAAGTTGGTTAC-AAATGACAAACTATTTGCACCAAATGAAG
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
*
37350 CGATTTTCTGTCC
196 CGATTTTCTGTGC
* * * * * * *
37363 ATGGAATGTTCGAGAATTGTCTCGATGGAAAGGATCGTGTTGAATACTTTAAGCAACAAAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * *
37428 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGTCCGAGAATCATGACAGATACAATTCTCACGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* ** ** *
37493 ATAAGTTTTTAAGTCAAAGGTCAAAAGTTGTTTAGGAAATGACAAACTATTTGGACCAAATGTAG
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
37558 CGATTTTCTGTGC
196 CGATTTTCTGTGC
* * *
37571 ATGGAATGTCCGGGAAATGTCTCGAAGGAAAGGATCG--TTGAATACTTTAAGCAACAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * *
37634 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGTCCAAGAACCATTAGAGATACAATTCTCACGAAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* *
37699 ATAAGTTTTTAATTCGAAGACCAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAT
131 ATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAA
* * **
37764 GCAATTTCCAATGC
195 GCGATTTTCTGTGC
* * * *
37778 ATGGAATGTTCGAGAAATGCCTCGAAGGAATGGATCGTCTTGAATACTATT-AGGAGCCGAAGTT
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAACAGAAGTT
* * * *
37842 ATAAAAGAACTCGTAAAAATTTGAAATGCTTGGAAGTTCGTCCAAGAACCAAGTGAGATACATTT
65 ATAAAAGAACTCGTAAAAGTTTG-AA-------AAGTTCGTCCAAGAACCATGAGAGATACAATT
** * ** *
37907 CTCACGTAAATAAGGATTTAAATGGAAGACCAAAAGTTGTTTACAAAATGATAAACTATTTGGAC
122 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
*
37972 CAAATGATA-CGA-TTTCTCGAGC
187 CAAATGA-AGCGATTTTCT-GTGC
** * *
37994 ATGGAATGTTCGAAAAATAG-CTTC-AAGGAATGGATTGTCTTGAATACTGTAAGGAACTA-AAG
1 ATGGAATGTTCGGGAAAT-GTC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-AGAAG
* * *
38056 TTATAAAAAAAATAGTAAAAGTTT-AACAAGTTCCAAAGTTCGTTCAAGAACCCA-GAGAGATAC
63 TTATAAAAGAACTCGTAAAAGTTTGAA-AAGTT-C---G-TC---CAAGAA-CCATGAGAGATAC
* *** * * *
38119 AATTCTCATGTAAATGCCTTTTTAATTCAAAGA-CAAAAGCTGATTAC-AAATGACAACCTATTT
118 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * *
38182 GGAGCGAATGATGCGA-TTTCTTGAGC
183 GGACCAAATGAAGCGATTTTC-TGTGC
* * * * * * *
38208 CTGGAATGCTCTGAAAAT-TGGTCGAAGGAATGGATCGCCTTGAATACTTTAAGGAACCGAAGTT
1 ATGGAATGTTCGGGAAATGT-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
* * * * *
38272 ATTAATGAACACGTAAAAGTTTGACATGTTCTAAAGTTCGTCCAAGAACCACGAGAGATATAATT
65 ATAAAAGAACTCGTAAAAGTTTG--A------AAAGTTCGTCCAAGAACCATGAGAGATACAATT
* * *
38337 CTCACGTAAATAAGTTTTTAATTCAATGACAAAAAGTTGTTTATAAAATGACAAACTATTTGGAC
122 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
* * * *
38402 CAAATAAAGCTATTTCCCGTGC
187 CAAATGAAGCGATTTTCTGTGC
* * * * * * *
38424 ATGGAATGTTTGGGAAATGTCTCAAAGGAAAGGATCATGTTGAATACTTGAAGGAACCGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * *
38489 TAAATGAACTCGTAAAAGTTTCACAAGTACGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* **
38554 ATAAGTTTTTAACTCAAAGATAAAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAAT-AA
131 ATAAGTTTTTAATTCAAAGA-CCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAA
* *
38618 TACGATTTTC-GAAGC
195 -GCGATTTTCTG-TGC
* * *** * * *
38633 ATGGAATGTTCTGGAAAT-TGCTCGAAGTAAACAATCGTCTTGAATACTTTCAGTAACCGAAGTT
1 ATGGAATGTTCGGGAAATGT-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
** * *
38697 ATAAAAGAACTCGTAAAAAATTGACTAGTGTGGAAGTTCATCCAAGAACCAAGAGAGATACAATT
65 ATAAAAGAACTCGTAAAAGTTTGA--A------AAGTTCGTCCAAGAACCATGAGAGATACAATT
** * ** *
38762 CTCACACAAATATGGATTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
122 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
* * * *
38827 CAAATGATGCGATTTCCCGAGC
187 CAAATGAAGCGATTTTCTGTGC
* * ** * * * * *
38849 ATGAAATGCTCGAAAAATAG-CTCAAAGGAATGGATCGTCGTGAATACTTTAAGCAAGAGAAATT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
* * * *
38913 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTCCAAGAA-CATGGAGAGTTAAAATTCTCATGT
65 ATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCAT-GAGAGATACAATTCTCACGT
* * * *
38977 AAATTAGTTTTTAATTCAACGACCAAAAGCTGGTTA-AAAATGACAAACTATTT-GATCCAAATG
129 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGA-CCAAATG
* *
39040 ATGCGA-TTTCTCGAGC
193 AAGCGATTTTCT-GTGC
* * * * * *
39056 ATTGAATGCTCGGTAAATAG-CTCGATGGAATAGATCATCTTGAATACTTTAAGGAATC-GAAGT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAGAAGT
** * * * *
39119 TATCGAAGAA-TAAGTAAAAGTTTGACGAGTTCGAATGTTCATCCAAGAACGAGGAGAGATACAA
64 TATAAAAGAACT-CGTAAAAGTTTGA--A-----AA-GTTCGTCCAAGAACCATGAGAGATACAA
* * * *
39183 TTCTCACGAAAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTACAAATTGACAAACTATTTGC
120 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
39248 ACCAAATGAAGCGATTTTCTGTGC
185 ACCAAATGAAGCGATTTTCTGTGC
* * * * *
39272 ATAGAATGTTCGGGAAATGTCTCGAAGGAATGGATCATGTTGAATACCTTAAGGAATAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* *
39337 TAAAAGAACTCGTAAAA-TTTGACAAGTTCGTCCAAGAACCATGACAGATACAATTCTCACGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* * * * *
39401 GTGAG-TTTTAATTCAAAGAACAAAAGTTGTTTACAAAAAGACAAACTATTTGGACCAAATGAAA
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
*
39465 CAATTTTCTGTGC
196 CGATTTTCTGTGC
* ** * * * *
39478 ATGGAATGGTCACGAAATGTCTCGGAGGAAAGGATC--ATTGAATACTTTAAGCAACAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * * *
39541 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGTCAAAGAACCATTAGAGGTACAATTTTCACGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* * * *
39606 ATAAATTTTTAATTCAAAGA-TAAAAGTTTTTTACAAAATGACAAACTATTTGGACCAAATGATG
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
* * **
39670 TGATTTCCCATGC
196 CGATTTTCTGTGC
* * * *
39683 ATGGAATGTTCGGGAAACGTCTCGAAGGAATGGATCGTCTTGAATACTATAAGGAGCCA-TAGTT
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA-ACAGAAGTT
* * * *
39747 ATAAAAGATCTCATAAAAACTTT-AAAAGTTTTCATGTTTGTCCAAGAACCAAGAGAGATACAAT
65 ATAAAAGAACTCGT-AAAAGTTTGAAAAG--TTC------GTCCAAGAACCATGAGAGATACAAT
** ** * * *
39811 TCTCACGTAAATAAGGATTTAATTGGAAGACCAAAAGTTTTTTACAAAATGATAAACTATTTAGA
121 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGA
* *
39876 CCAAATGAGGCGA-TTTCTCGAGC
186 CCAAATGAAGCGATTTTCT-GTGC
*** * * *
39899 ATGGAATGTTCAAAAAATGGTTTC-AAGGAATGGATCGTCTCGAATACTTTAAGGAACTGAAGTT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
* * * * *
39963 ATAACAGAGCTCGTAAAAGTTTCAAAACTTCCAAAGTTCGTTCAAGAACCAAGAGAGATACAATT
65 ATAAAAGAACTCGTAAAAGTTT---GA-----AAAGTTCGTCCAAGAACCATGAGAGATACAATT
** ** * * * *
40028 CTCACGTAAATAAGGATTTAATTTGAAGACTAAAAGTTTTTTACAAAATGATAAACTATTTAGAC
122 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
* ***
40093 CAAATGAGGCGA-TTTCACAAGC
187 CAAATGAAGCGATTTTC-TGTGC
* ** * * *
40115 ATGGAATATTCGAAAAATGGTTTC-AAGGAATGGATCGTCTCGAATACTTTAAGGAACTGAAGTT
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTT
* * * * *
40179 ATAAAAGAGCTCGTAAAAGTTTCACAACTTGCAAAGTTCGTTCAAGAACCAAGAGATATACAATT
65 ATAAAAGAACTCGTAAAAG--T------TTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATT
* ** * * * *
40244 CTCATGTAAATAAAATTTTAATTCAAAGACCAAAAGCTGGTTA-AAAATTACAAACTATTTGGTC
122 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
* *
40308 CAAATGATGCGA-TTTCTCGAGC
187 CAAATGAAGCGATTTTCT-GTGC
* ** * * **
40330 ATGGAATGCTCGATAAATAG-CTC-AATGGAATGGATCGTCTTTAATTCTTTAAGGAACTTAAGT
1 ATGGAATGTTCGGGAAAT-GTCTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGT
* * ** * *
40393 TATAAAATAACTCGTAAAAGTTTGACGAGTTCGAATGTTCATCCAAGAATGAGGAGAGATATAAT
64 TATAAAAGAACTCGTAAAAGTTTGA--A-----AA-GTTCGTCCAAGAACCATGAGAGATACAAT
* * * * *
40458 TCTTA-GAAAATAAGTTTTTAGTTCAATGACCAAAAGTTGTCTACAAAATGACAAACTATTTGGA
121 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGA
40522 CCAAATGAAGCGATTTTCTGTGC
186 CCAAATGAAGCGATTTTCTGTGC
* * * * *
40545 ATGGAATGTTCGCGAAATGTCTCAAAGGAAAGGAACGTGTTGAATACTTTAAGGAACAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
** * * * *
40610 TAAATCAACTCGTAAAAGTTTGACAAGTTCGTTCAAGAACCATGACAGATACAATTCTCACATAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* * **
40675 ATAAGTTTTTAAGTCAAAGAACAAAAGTTGTTTATGAAATGACAAACTATTTGGACCAAATGAAG
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
40740 CGATTTTCTGTGC
196 CGATTTTCTGTGC
* ** * * * * *
40753 ATGGAATGTCCAAGAAATGGCCCGAAGGAAAGGATCG--TTGAATACTTTAAGCAATAGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * * * *
40816 TAAAAGAACTCGTAAAAGTTTGACATGTTCGCCCAAGAACCATTAGAGATACAATTTTCATGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* *
40881 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAAACTATTTGGACCAAATGATG
131 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
* **
40946 CGATTTCCCATGC
196 CGATTTTCTGTGC
* * * * * *
40959 ATGAAATGTTCGAGAAATGTCTCGAAGGATTGGATCGTCTTGAATACTATAAGGAGCCGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* * * *
41024 TAAAAGAACTCATAAAAATTTGAAAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGATACAATTC
66 TAAAAGAACTCGTAAAAGTTTG--AA------AAGTTCGTCCAAGAACCATGAGAGATACAATTC
** **
41089 TCACGTAAATAAGGATTTAATTGGAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACC
123 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACC
* * *
41154 AAATGATGCGA-TTTCACGAGC
188 AAATGAAGCGATTTTC-TGTGC
* *** ** * *
41175 ATGAAATGTTCAAAAAATAACTTC-AAGGAATTGG-TCATCTTGAATACTTTAAGGAACTGAAGT
1 ATGGAATGTTCGGGAAATGTC-TCGAAGGAA-TGGATCGTCTTGAATACTTTAAGGAACAGAAGT
* * * * * *
41238 TAGAAAAGAACTCGGAAAGGTTTGACAAGTTCCAAAGTTCGTTCAATAACCAAGAGAGATACAAT
64 TATAAAAGAACTCGTAAAAGTTTG---A-----AAAGTTCGTCCAAGAACCATGAGAGATACAAT
* * * * *
41303 TCTCAAGTAAATGCA-TTTTTAATTCGAAGACCAAAAGCTAG-TTAC-AAATGACAACCTATTTG
121 TCTCACGTAAAT-AAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTG
* * *
41365 GACCAAATGATGC-AATTTCTTGAGC
184 GACCAAATGAAGCGATTTTC-TGTGC
* * * * * *
41390 CTGGAAAGCTT-TGAAAAT-TGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCA-AAA
1 ATGGAATG-TTCGGGAAATGT-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAGAAG
* * * *
41452 TTATTAAAGAACTTGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCACGAGAGATACTA
63 TTATAAAAGAACTCGTAAAAGTTTG---A-----AAAGTTCGTCCAAGAACCATGAGAGATACAA
*
41517 TTCTCACGTAAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
120 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
* *
41582 ACCAAATGAAGTGA-TTTC---CC
185 ACCAAATGAAGCGATTTTCTGTGC
* * * * *
41602 AT-G---CTT--GG-AATGTCTCGAAGGAAAGGATCGTGTTGAATACTTGAAGGAACCGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
** * * * * *
41660 TAAATTAACTCGTTAAAGTTTGACATGTACGTCCAAGAACCATGAGAGATACAATTCACACGTAA
66 TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
* * * *
41725 GTAAGTTTTTAACTCAAAGACCAAAAAGTTATTTACAAAATGACAAACTATTTGGACCAAA-AAA
131 ATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAA
* * * *
41789 TACGAATTTCAGAGC
195 -GCGATTTTCTGTGC
* * *
41804 ATGGAATGTTCGGGAAAT-TGCTCGAAGGGAA-CGATCGTCTTGAATACTCTAAGGAACCGAAGT
1 ATGGAATGTTCGGGAAATGT-CTCGAA-GGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGT
* * * *
41867 TATAAAAGAACTTGTAAAAATTTGACAATTTTGGATGTTCGTCCAAGAACCAAGAGGGATACAAT
64 TATAAAAGAACTCGTAAAAGTTTGA-AA------A-GTTCGTCCAAGAACCATGAGAGATACAAT
* * * *** * *
41932 TGTCATGCAAATAAGGACTTAATTCGAAGACCAAAAGTTGTTTACAAAAGGACAAACTATTTGGA
121 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGA
* *
41997 CCAAATGAAGCGATTTCCTGAGC
186 CCAAATGAAGCGATTTTCTGTGC
* * ** * * * *
42020 ATCGAATGTTC-GAAAATAACTTGAAGGAATGGATCATCGTGAATACTTTAAGGAAGC-GAAATT
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAGAAGTT
* * * * * **
42083 ATAAAAGAAATCGTAAAAGTTTGACAAGTTTGTCCAAGAACAAGGAGAGATACAATTCTCTTGTA
65 ATAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTA
* * * * * * * *
42148 AATTAGTTTTTAATTCAACGACCAAAAGCTGGTTA-AAAATGACAAACTATTTCGTCCAAATTAT
130 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAA
*
42212 GC-ATTTTCTCGAGC
195 GCGATTTTCT-GTGC
* * * * *
42226 ATGGAATGCTCGGTAAATAG-CTCGATGGAATGGATCATCTTGAATACTTTAAGGAACTGATA-T
1 ATGGAATGTTCGGGAAAT-GTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGA-AGT
* * *
42289 TGTAAAAGAACTCGTAAAAGTTTGATGAGTTCGAATGTTCGTCCAAGAACGA-GTAGAGATACAG
64 TATAAAAGAACTCGTAAAAGTTTGA--A-----AA-GTTCGTCCAAGAACCATG-AGAGATACAA
* * *
42353 TTTTCATGTAAATAAGTTTTTAATTGAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
120 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
* * **
42418 ACCAAATGATGCGATTTCCCATGC
185 ACCAAATGAAGCGATTTTCTGTGC
* * * *
42442 ATGGAATGTTCGAGAAATGTCTCAAAGGAATGGATCGTCTTGAATACTATAAGGAACCGAAGTTA
1 ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
* *
42507 TAAAACAACTCGTTAAAA-TTTGAAAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGATACAATT
66 TAAAAGAACTCG-TAAAAGTTTG--AA------AAGTTCGTCCAAGAACCATGAGAGATACAATT
* * * ** *
42571 GTCATG-AAATATGGATTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
122 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGAC
*
42635 CAAATGATGCGATTT
187 CAAATGAAGCGATTT
42650 ATCAAGCATG
Statistics
Matches: 8159, Mismatches: 1334, Indels: 832
0.79 0.13 0.08
Matches are distributed among these distances:
189 53 0.01
190 102 0.01
191 63 0.01
192 5 0.00
193 2 0.00
194 1 0.00
195 1 0.00
197 65 0.01
198 91 0.01
199 6 0.00
200 4 0.00
201 15 0.00
202 8 0.00
203 6 0.00
204 106 0.01
205 186 0.02
206 565 0.07
207 956 0.12
208 1214 0.15
209 428 0.05
210 17 0.00
211 10 0.00
212 71 0.01
213 68 0.01
214 224 0.03
215 1137 0.14
216 2002 0.25
217 547 0.07
218 18 0.00
219 2 0.00
220 54 0.01
221 108 0.01
222 16 0.00
223 2 0.00
224 6 0.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (208 bp):
ATGGAATGTTCGGGAAATGTCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTA
TAAAAGAACTCGTAAAAGTTTGAAAAGTTCGTCCAAGAACCATGAGAGATACAATTCTCACGTAA
ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGAAG
CGATTTTCTGTGC
Found at i:42730 original size:52 final size:52
Alignment explanation
Indices: 42673--42862 Score: 209
Period size: 52 Copynumber: 3.7 Consensus size: 52
42663 TGGTCGACGC
* * * * * * *
42673 TTACGCTCACCAACTTACACACATTTACACTGGTTAGCTTGTACATATGTGT
1 TTACGCTCGCCAGCTTGCACACATTTACACTCGTCAGCTTATACATATGCGT
* * * * *
42725 TTACGCTTGCCAGCTTGCACACGTTTACACTCATCAGCTTTTACATATGCAT
1 TTACGCTCGCCAGCTTGCACACATTTACACTCGTCAGCTTATACATATGCGT
* * *
42777 TTACGCTCGCTAGCTTGCACACTTTTACGCTCGTCAGCTTATACATATGCGT
1 TTACGCTCGCCAGCTTGCACACATTTACACTCGTCAGCTTATACATATGCGT
* * * *
42829 TTACGCTCTCCTGCTTGCACACGTTTACGCTCGT
1 TTACGCTCGCCAGCTTGCACACATTTACACTCGT
42863 GGATTATATG
Statistics
Matches: 116, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 116 1.00
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (52 bp):
TTACGCTCGCCAGCTTGCACACATTTACACTCGTCAGCTTATACATATGCGT
Found at i:42919 original size:2 final size:2
Alignment explanation
Indices: 42912--42943 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
42902 TACCCTGGAT
*
42912 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
42944 CACATGCAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:45830 original size:63 final size:62
Alignment explanation
Indices: 45732--45857 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 62
45722 TACTGACTAG
*
45732 TTGATTGAATGAAATCCTCAAAACCCAACAATTGAAGAACTCATACTAAAGCAACCTAATTT
1 TTGATTGAATGAAATCCCCAAAACCCAACAATTGAAGAACTCATACTAAAGCAACCTAATTT
*
45794 TTGATTGAATGAAAATCCCCAAAACCTAACAATTGAAGAACTCATACTAAAGCAACCTAATTT
1 TTGATTGAATG-AAATCCCCAAAACCCAACAATTGAAGAACTCATACTAAAGCAACCTAATTT
45857 T
1 T
45858 GCCAAAGTTG
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
62 11 0.18
63 50 0.82
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.26
Consensus pattern (62 bp):
TTGATTGAATGAAATCCCCAAAACCCAACAATTGAAGAACTCATACTAAAGCAACCTAATTT
Found at i:49699 original size:48 final size:47
Alignment explanation
Indices: 49629--49802 Score: 205
Period size: 48 Copynumber: 3.8 Consensus size: 47
49619 TATTTATGCT
* *
49629 TCATTAAGT-TTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTACA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAAT-TACA
*
49676 TCATTAAGTGTTTTGTTTGTTAAATGCATATTTGTTTAGT-A--A-A
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATTACA
* * *
49719 TTATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAAT-TACA
* * * *
49767 TTATTAATTGTTTTGTTTGTTAAATACAACTTTGTT
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTT
49803 AAATGCCTTG
Statistics
Matches: 111, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
43 38 0.34
44 2 0.02
47 10 0.09
48 61 0.55
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.53
Consensus pattern (47 bp):
TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATTACA
Found at i:53136 original size:39 final size:37
Alignment explanation
Indices: 53062--53155 Score: 91
Period size: 39 Copynumber: 2.5 Consensus size: 37
53052 AGGTAACAAC
*
53062 AAAAGAAAAAGAGAAAAACATGAGAGAATGCAAAAAAA
1 AAAAGAAAAAGA-AAAAACATGAGAGAAAGCAAAAAAA
* *
53100 AAAAGAAAAAGAAAAAGAGCATGAGGGAAAAG-AAAAAGA
1 AAAAGAAAAAGAAAAA-A-CATGAGAG-AAAGCAAAAAAA
* **
53139 GAGCGAAAAAGAAAAAA
1 AAAAGAAAAAGAAAAAA
53156 TAAAAGAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
37 4 0.09
38 14 0.30
39 26 0.55
40 3 0.06
ACGTcount: A:0.70, C:0.04, G:0.22, T:0.03
Consensus pattern (37 bp):
AAAAGAAAAAGAAAAAACATGAGAGAAAGCAAAAAAA
Found at i:53160 original size:12 final size:12
Alignment explanation
Indices: 53145--53174 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
53135 AAGAGAGCGA
53145 AAAAGAAAAAAT
1 AAAAGAAAAAAT
*
53157 AAAAGAACAAAT
1 AAAAGAAAAAAT
53169 AAAAGA
1 AAAAGA
53175 GGTTGTGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.80, C:0.03, G:0.10, T:0.07
Consensus pattern (12 bp):
AAAAGAAAAAAT
Found at i:56333 original size:48 final size:48
Alignment explanation
Indices: 56265--56443 Score: 252
Period size: 48 Copynumber: 3.8 Consensus size: 48
56255 TATTTATGCT
* * *
56265 TCATTAAGT-TTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
* * * *
56312 TCATAAAGTGTTTTGTTTGTTAAATGCATCTTCGTTTAGTAATCTACA
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
* **
56360 TTATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATAAGCA
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
*
56408 TTATTAACTGTTTTGTTTGTTAAATGCATCTTTGTT
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTT
56444 AAATGCCTTG
Statistics
Matches: 119, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 8 0.07
48 111 0.93
ACGTcount: A:0.25, C:0.10, G:0.13, T:0.51
Consensus pattern (48 bp):
TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
Found at i:63022 original size:24 final size:24
Alignment explanation
Indices: 62990--63045 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
62980 TGTATGGGTA
62990 TCTTCTTGTTTTTCATTTTCATTT
1 TCTTCTTGTTTTTCATTTTCATTT
*
63014 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCATTT
*
63038 TCCTCTTG
1 TCTTCTTG
63046 AGAACTCTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.05, C:0.20, G:0.05, T:0.70
Consensus pattern (24 bp):
TCTTCTTGTTTTTCATTTTCATTT
Found at i:71710 original size:35 final size:35
Alignment explanation
Indices: 71663--71732 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
71653 AGGGAGTATG
71663 TTATATTAAGAATCCTAAAATGGAGAGAAAAAGAT
1 TTATATTAAGAATCCTAAAATGGAGAGAAAAAGAT
*
71698 TTATATTGAGAATCCTAAAATGGAGAGAAAAAGAT
1 TTATATTAAGAATCCTAAAATGGAGAGAAAAAGAT
71733 GGTGAGAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.26
Consensus pattern (35 bp):
TTATATTAAGAATCCTAAAATGGAGAGAAAAAGAT
Found at i:74236 original size:32 final size:32
Alignment explanation
Indices: 74198--74292 Score: 136
Period size: 32 Copynumber: 3.0 Consensus size: 32
74188 GCCATACATA
* *
74198 CATGTACCTGAAATATATTAATCAGCTAATTG
1 CATGTACCTGAAACACATTAATCAGCTAATTG
* *
74230 CGTGTACCTGGAACACATTAATCAGCTAATTG
1 CATGTACCTGAAACACATTAATCAGCTAATTG
* *
74262 CATGTACTTGAAACACATTAATCAACTAATT
1 CATGTACCTGAAACACATTAATCAGCTAATT
74293 AATTTCTGCT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.32
Consensus pattern (32 bp):
CATGTACCTGAAACACATTAATCAGCTAATTG
Found at i:74381 original size:39 final size:39
Alignment explanation
Indices: 74338--74436 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
74328 TTAATTTGTC
* *
74338 TCAAACTTAGACACATTAAAAACAATTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
* *
74377 TCAAACTAAGACGCATTAAAAATAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
74416 TCAAACTAAGACACATTAAAA
1 TCAAACTAAGACACATTAAAA
74437 CTCTATTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.53, C:0.14, G:0.06, T:0.27
Consensus pattern (39 bp):
TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
Found at i:77615 original size:26 final size:25
Alignment explanation
Indices: 77553--77626 Score: 73
Period size: 26 Copynumber: 3.0 Consensus size: 25
77543 TTTTTTTATC
*
77553 TCTTTTT-CTTCCTTTTCATCTTTTT
1 TCTTTTTCCTTTCTTTTCA-CTTTTT
*
77578 T-TTTCTCTCTTTCTTTTCACTTTTT
1 TCTTTTTC-CTTTCTTTTCACTTTTT
*
77603 TGCTTTTTCCTTTTTTTTCA-TTTT
1 T-CTTTTTCCTTTCTTTTCACTTTT
77627 CACTCTTTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
24 4 0.10
25 12 0.29
26 20 0.49
27 5 0.12
ACGTcount: A:0.04, C:0.22, G:0.01, T:0.73
Consensus pattern (25 bp):
TCTTTTTCCTTTCTTTTCACTTTTT
Found at i:79715 original size:22 final size:21
Alignment explanation
Indices: 79689--79732 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
79679 TAGCCTTTTG
79689 TTTTTCT-ATACTTTCAAGACTT
1 TTTTTCTAATA-TTTCAA-ACTT
*
79711 TTTTTTTAATATTTCAAACTT
1 TTTTTCTAATATTTCAAACTT
79732 T
1 T
79733 ACACATCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 12 0.60
23 3 0.15
ACGTcount: A:0.25, C:0.14, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTTCTAATATTTCAAACTT
Found at i:90122 original size:10 final size:10
Alignment explanation
Indices: 90107--90132 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
90097 TAAATTAATG
90107 AAATATGTGA
1 AAATATGTGA
90117 AAATATGTGA
1 AAATATGTGA
90127 AAATAT
1 AAATAT
90133 TATATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (10 bp):
AAATATGTGA
Found at i:90259 original size:23 final size:21
Alignment explanation
Indices: 90224--90265 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
90214 AATATTTCAT
*
90224 TTAATAATTTGGGTTGAATTAA
1 TTAATAAATTGGGTT-AATTAA
90246 TTAATTAAATTGGGTTAATT
1 TTAA-TAAATTGGGTTAATT
90266 TTATTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.48
Consensus pattern (21 bp):
TTAATAAATTGGGTTAATTAA
Found at i:90822 original size:13 final size:13
Alignment explanation
Indices: 90804--90834 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
90794 GAGCCATCAG
90804 CAAAGTGAAGGAA
1 CAAAGTGAAGGAA
90817 CAAAGTGAAGGAA
1 CAAAGTGAAGGAA
90830 CAAAG
1 CAAAG
90835 GAGCCCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.55, C:0.10, G:0.29, T:0.06
Consensus pattern (13 bp):
CAAAGTGAAGGAA
Found at i:94294 original size:7 final size:7
Alignment explanation
Indices: 94282--94329 Score: 73
Period size: 7 Copynumber: 7.1 Consensus size: 7
94272 ACACCATTTC
94282 TTAGTTT
1 TTAGTTT
94289 TTAGTTT
1 TTAGTTT
94296 TTAGTTT
1 TTAGTTT
94303 TTAGTTT
1 TTAGTTT
94310 TTAGTTT
1 TTAGTTT
*
94317 GTA-TTT
1 TTAGTTT
94323 TTA-TTT
1 TTAGTTT
94329 T
1 T
94330 AGAAATGAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
6 9 0.23
7 30 0.77
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (7 bp):
TTAGTTT
Found at i:97101 original size:19 final size:18
Alignment explanation
Indices: 97047--97124 Score: 77
Period size: 20 Copynumber: 4.1 Consensus size: 18
97037 AGTTAAACTG
97047 ATTTTAA-AAGTCAAAAT
1 ATTTTAACAAGTCAAAAT
*
97064 AATTTGAACCAAGTCAAAAT
1 -ATTTTAA-CAAGTCAAAAT
*
97084 CATTTTAACAATTCAAAAT
1 -ATTTTAACAAGTCAAAAT
97103 ATTTTTCAAACAAGTCAAAAT
1 A-TTTT--AACAAGTCAAAAT
97124 A
1 A
97125 ACTCCAGGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
18 7 0.14
19 14 0.28
20 16 0.32
21 13 0.26
ACGTcount: A:0.50, C:0.13, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTTTAACAAGTCAAAAT
Found at i:97120 original size:21 final size:19
Alignment explanation
Indices: 97054--97124 Score: 72
Period size: 19 Copynumber: 3.6 Consensus size: 19
97044 CTGATTTTAA
* *
97054 AAGTCAAAATAATTTGAACC
1 AAGTCAAAAT-ATTTTAAAC
97074 AAGTCAAAATCATTTT-AAC
1 AAGTCAAAAT-ATTTTAAAC
*
97093 AATTCAAAATATTTTTCAAAC
1 AAGTCAAAATA-TTTT-AAAC
97114 AAGTCAAAATA
1 AAGTCAAAATA
97125 ACTCCAGGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
18 1 0.02
19 15 0.35
20 14 0.33
21 13 0.30
ACGTcount: A:0.51, C:0.14, G:0.06, T:0.30
Consensus pattern (19 bp):
AAGTCAAAATATTTTAAAC
Found at i:97120 original size:40 final size:38
Alignment explanation
Indices: 97047--97123 Score: 100
Period size: 40 Copynumber: 2.0 Consensus size: 38
97037 AGTTAAACTG
* *
97047 ATTTTAAAAGTCAAAATAATTTGAACCAAGTCAAAATC
1 ATTTTAAAAGTCAAAATAATTTCAAACAAGTCAAAATC
* *
97085 ATTTTAACAATTCAAAATATTTTTCAAACAAGTCAAAAT
1 ATTTTAA-AAGTCAAAATA-ATTTCAAACAAGTCAAAAT
97124 AACTCCAGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 7 0.21
39 10 0.30
40 16 0.48
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.32
Consensus pattern (38 bp):
ATTTTAAAAGTCAAAATAATTTCAAACAAGTCAAAATC
Found at i:102621 original size:27 final size:28
Alignment explanation
Indices: 102591--102672 Score: 71
Period size: 27 Copynumber: 3.0 Consensus size: 28
102581 GAGACTTAAG
102591 CAAATCATCTCCATCAATAGGAGATTC-
1 CAAATCATCTCCATCAATAGGAGATTCA
* * * * *
102618 CAAAACCTCTTCCAT-ACTATGCG-TATCA
1 CAAATCATC-TCCATCAATAGGAGAT-TCA
*
102646 CAAATCATCTCCATCAGTAGGAGATTC
1 CAAATCATCTCCATCAATAGGAGATTC
102673 TAAAACCTCT
Statistics
Matches: 40, Mismatches: 10, Indels: 9
0.68 0.17 0.15
Matches are distributed among these distances:
26 1 0.03
27 19 0.47
28 19 0.47
29 1 0.03
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.27
Consensus pattern (28 bp):
CAAATCATCTCCATCAATAGGAGATTCA
Found at i:102631 original size:28 final size:28
Alignment explanation
Indices: 102600--102687 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
102590 GCAAATCATC
102600 TCCATCAATAGGAGATTCCAAAACCTCT
1 TCCATCAATAGGAGATTCCAAAACCTCT
* * * * *
102628 TCCAT-ACTATGCG-TATCACAAATCATC-
1 TCCATCAATAGGAGAT-TC-CAAAACCTCT
* *
102655 TCCATCAGTAGGAGATTCTAAAACCTCT
1 TCCATCAATAGGAGATTCCAAAACCTCT
102683 TCCAT
1 TCCAT
102688 ACTATGCGTA
Statistics
Matches: 44, Mismatches: 11, Indels: 10
0.68 0.17 0.15
Matches are distributed among these distances:
26 1 0.02
27 18 0.41
28 24 0.55
29 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.28
Consensus pattern (28 bp):
TCCATCAATAGGAGATTCCAAAACCTCT
Found at i:102678 original size:55 final size:55
Alignment explanation
Indices: 102591--102700 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
102581 GAGACTTAAG
102591 CAAATCATCTCCATCAATAGGAGATTCCAAAACCTCTTCCATACTATGCGTATCA
1 CAAATCATCTCCATCAATAGGAGATTCCAAAACCTCTTCCATACTATGCGTATCA
* *
102646 CAAATCATCTCCATCAGTAGGAGATTCTAAAACCTCTTCCATACTATGCGTATCA
1 CAAATCATCTCCATCAATAGGAGATTCCAAAACCTCTTCCATACTATGCGTATCA
102701 TTACTAGAGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (55 bp):
CAAATCATCTCCATCAATAGGAGATTCCAAAACCTCTTCCATACTATGCGTATCA
Found at i:108892 original size:18 final size:19
Alignment explanation
Indices: 108869--108905 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
108859 ATATTTTTTT
108869 TATTTTT-TATTTTTCTCG
1 TATTTTTCTATTTTTCTCG
*
108887 TATTTTTCTTTTTTTCTCG
1 TATTTTTCTATTTTTCTCG
108906 ACTTTTGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.08, C:0.14, G:0.05, T:0.73
Consensus pattern (19 bp):
TATTTTTCTATTTTTCTCG
Found at i:116420 original size:21 final size:23
Alignment explanation
Indices: 116375--116424 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
116365 TTTTATTTGA
*
116375 TAAAGTATTTTGATATAACAAAT
1 TAAAATATTTTGATATAACAAAT
*
116398 TAAAATATTTTGA-AT-ATAAAT
1 TAAAATATTTTGATATAACAAAT
116419 TAAAAT
1 TAAAAT
116425 TGACAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.44
22 2 0.08
23 12 0.48
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (23 bp):
TAAAATATTTTGATATAACAAAT
Found at i:116533 original size:20 final size:19
Alignment explanation
Indices: 116504--116572 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
116494 AGTTTAAAAT
*
116504 CAAGTTAAAATTATTCTAAA
1 CAAGTCAAAATTATT-TAAA
* *
116524 CAAGTCAAAATCATTTTAA
1 CAAGTCAAAATTATTTAAA
* *
116543 CAATTCAAAATGTTTTTCAAA
1 CAAGTCAAAAT-TATTT-AAA
116564 CAAGTCAAA
1 CAAGTCAAA
116573 GTAGCTTCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
19 13 0.33
20 16 0.41
21 10 0.26
ACGTcount: A:0.48, C:0.14, G:0.06, T:0.32
Consensus pattern (19 bp):
CAAGTCAAAATTATTTAAA
Found at i:116571 original size:21 final size:20
Alignment explanation
Indices: 116504--116572 Score: 68
Period size: 19 Copynumber: 3.5 Consensus size: 20
116494 AGTTTAAAAT
* * *
116504 CAAGTTAAAATTATTCTAAA
1 CAAGTCAAAATCATTTTAAA
116524 CAAGTCAAAATCATTTT-AA
1 CAAGTCAAAATCATTTTAAA
* **
116543 CAATTCAAAATGTTTTTCAAA
1 CAAGTCAAAATCATTTT-AAA
116564 CAAGTCAAA
1 CAAGTCAAA
116573 GTAGCTTCAA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
19 16 0.40
20 14 0.35
21 10 0.25
ACGTcount: A:0.48, C:0.14, G:0.06, T:0.32
Consensus pattern (20 bp):
CAAGTCAAAATCATTTTAAA
Found at i:120531 original size:15 final size:15
Alignment explanation
Indices: 120511--120550 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
120501 TGCGCCTTTG
*
120511 TTTTCTTTTATTTCT
1 TTTTCTTTTAGTTCT
*
120526 TTTTCTTTGAGTTCT
1 TTTTCTTTTAGTTCT
120541 TCTTTCTTTT
1 T-TTTCTTTT
120551 TTGATTAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.05, C:0.15, G:0.05, T:0.75
Consensus pattern (15 bp):
TTTTCTTTTAGTTCT
Found at i:124091 original size:5 final size:5
Alignment explanation
Indices: 124077--124151 Score: 51
Period size: 5 Copynumber: 14.8 Consensus size: 5
124067 CATTAATTGC
* * * * * * *
124077 ATTTT CTTTT ATTTT ATTGT GTTTT ATTGT ATTTT ATTCCT ACTTT ACTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATT-TT ATTTT ATTTT
* * *
124128 GTTTT ATTTT ATTTC ATGTT ATTT
1 ATTTT ATTTT ATTTT ATTTT ATTT
124152 AAGTGCTTAG
Statistics
Matches: 51, Mismatches: 18, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
5 48 0.94
6 3 0.06
ACGTcount: A:0.16, C:0.08, G:0.07, T:0.69
Consensus pattern (5 bp):
ATTTT
Found at i:124101 original size:10 final size:10
Alignment explanation
Indices: 124072--124114 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
124062 TTTTCCATTA
*
124072 ATTGCATTTT
1 ATTGTATTTT
* *
124082 CTTTTATTTT
1 ATTGTATTTT
*
124092 ATTGTGTTTT
1 ATTGTATTTT
124102 ATTGTATTTT
1 ATTGTATTTT
124112 ATT
1 ATT
124115 CCTACTTTAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.16, C:0.05, G:0.09, T:0.70
Consensus pattern (10 bp):
ATTGTATTTT
Found at i:124822 original size:48 final size:48
Alignment explanation
Indices: 124746--124926 Score: 281
Period size: 48 Copynumber: 3.8 Consensus size: 48
124736 TATTTATGCT
* * *
124746 TCATTAAATGTTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAACTG-TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
*
124795 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
* *
124843 TTATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCA
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
* *
124891 TTATTAACTATTTTGTTTGTTAAATGCATCTTTGTT
1 TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTT
124927 AAATGCCTTG
Statistics
Matches: 125, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
48 116 0.93
49 9 0.07
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.53
Consensus pattern (48 bp):
TCATTAACTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
Found at i:131558 original size:15 final size:16
Alignment explanation
Indices: 131538--131568 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
131528 TGTCATAACA
131538 TTACCCT-ACATTATT
1 TTACCCTAACATTATT
131553 TTACCCTAACATTATT
1 TTACCCTAACATTATT
131569 CTTTTTCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (16 bp):
TTACCCTAACATTATT
Found at i:131777 original size:39 final size:39
Alignment explanation
Indices: 131700--131783 Score: 105
Period size: 39 Copynumber: 2.2 Consensus size: 39
131690 ACACGCAACA
* **
131700 GATATGTTATAAGATATGCTCCGATATTGAATTTGATAT
1 GATATGTTATAAGATATGCTCCGATATGGAATCAGATAT
* * *
131739 GATATGTTATTAGATATGTTCTGATATGGAATCAGATAT
1 GATATGTTATAAGATATGCTCCGATATGGAATCAGATAT
*
131778 GCTATG
1 GATATG
131784 ATACATTCTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.40
Consensus pattern (39 bp):
GATATGTTATAAGATATGCTCCGATATGGAATCAGATAT
Found at i:131785 original size:22 final size:22
Alignment explanation
Indices: 131736--131786 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
131726 TTGAATTTGA
** * *
131736 TATGATATGTTATTAGATATGT
1 TATGATATGGAATCAGATATGC
*
131758 TCTGATATGGAATCAGATATGC
1 TATGATATGGAATCAGATATGC
131780 TATGATA
1 TATGATA
131787 CATTCTGATA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.41
Consensus pattern (22 bp):
TATGATATGGAATCAGATATGC
Found at i:131801 original size:2 final size:2
Alignment explanation
Indices: 131794--131823 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
131784 ATACATTCTG
131794 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
131824 CATTATATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:133691 original size:20 final size:21
Alignment explanation
Indices: 133652--133694 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
133642 TGATTTTTGG
* *
133652 AAAATTAATTTTGATCAAATT
1 AAAATTAAATTAGATCAAATT
133673 AAAATTAAATTAG-TCAAATT
1 AAAATTAAATTAGATCAAATT
133693 AA
1 AA
133695 CTAAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (21 bp):
AAAATTAAATTAGATCAAATT
Found at i:137293 original size:23 final size:23
Alignment explanation
Indices: 137232--137294 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
137222 CTGTAACATC
* **
137232 CATTTCATTTCCATTTCCATTTT
1 CATTTCATTTTCATTTCCATCCT
* *
137255 CATATCATTCTT-ATTTTCATCCT
1 CATTTCATT-TTCATTTCCATCCT
137278 CATTTCATTTTCATTTC
1 CATTTCATTTTCATTTC
137295 ATATTCAAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
22 2 0.06
23 28 0.90
24 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.00, T:0.56
Consensus pattern (23 bp):
CATTTCATTTTCATTTCCATCCT
Found at i:137301 original size:17 final size:16
Alignment explanation
Indices: 137234--137301 Score: 64
Period size: 17 Copynumber: 3.9 Consensus size: 16
137224 GTAACATCCA
137234 TTTCATTTCCATTTCCAT
1 TTTCATTT-CATTT-CAT
* *
137252 TTTCATATCATTCTTAT
1 TTTCATTTCATT-TCAT
*
137269 TTTCATCCTCATTTCAT
1 TTTCAT-TTCATTTCAT
137286 TTTCATTTCATATTCA
1 TTTCATTTCAT-TTCA
137302 AATCATAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
16 4 0.10
17 25 0.60
18 13 0.31
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTCATTTCATTTCAT
Found at i:137898 original size:6 final size:7
Alignment explanation
Indices: 137881--137906 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
137871 AAAACACTTG
137881 AAAAAAT
1 AAAAAAT
137888 AAAAAAT
1 AAAAAAT
137895 AAAAAAT
1 AAAAAAT
137902 AAAAA
1 AAAAA
137907 CTATTGGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Done.