Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011536.1 Kokia drynarioides strain JFW-HI SEQ_126522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5832
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Found at i:412 original size:216 final size:213
Alignment explanation
Indices: 5--2521 Score: 2075
Period size: 216 Copynumber: 11.8 Consensus size: 213
1 TACC
* * * *
5 AGTTCATCTATAACTTTCA-TTCCTTAAAGTATTCATGACAATCCATTCCTTCAAGCAATATTTC
1 AGTTCTTCTAAAAC-TTCAGTTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTC
* * * *
69 GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGCCATTTTGTAAACAATTT
65 GAACATTCCATGCTCG-GAAATCGCATCATTT-GTCTAAATAGTTTGTCATTTTCTAAACAACTT
* * *
134 TTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACTT
128 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * *
199 TCGAACTTGATGAAGTTTTGCA
193 TCGAACTTGA-AAACTTTTACA
* *
221 AGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCAATTTTTCG
1 AGTTCTTCTAAAACTTCAGTTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTCG
* * * * *
286 AACATTCCAAGCACAGGGAATCGCTTCATTATGTCTAAATAGTTTGTCATTTTCTAAACAACTGT
66 AACATTCCATGCTC-GGAAATCGCATCATT-TGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * ** * * * * *
351 TGCTCTTTGAATTAAATTCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTAGACAAACTTT
129 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT
* *
416 CAAACTTGACATACTTTTACA
194 CGAACTTGA-AAACTTTTACA
* * * * * * *
437 AGTTCTTCTATAACTTC-GATTTCTTAAAGTATTCAAGATAATCCATTCCTTAGAGTAATTTTTT
1 AGTTCTTCTAAAACTTCAG-TTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTC
* * * *
501 GAATATTCCATTCTCAGGAAATCGCATCAGTTGGTCTAAATACTTTGTCATTTTCTAAACAACTT
65 GAACATTCCATGCTC-GGAAATCGCATCA-TTTGTCTAAATAGTTTGTCATTTTCTAAACAACTT
* * * * * *
566 TTGGTCTTTCAATGAAAAACTTATTAACCTGAGAGTTGTTTCTGTCTTGGTTCTTGGACGAAC-T
128 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
*
630 TCTGAACTTGCAAAACTTTTACC
193 TC-GAACTTG-AAAACTTTTACA
* * * *
653 AGTTCATCTATAACTTTC-GTTCCTTAAAGTATTCATGACAATCCATTCCTTCAAGCAA-TGTTC
1 AGTTCTTCTAAAAC-TTCAGTTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTC
* * * * * *
716 TGAACATTCCAAGCTTGGGAAATCGCATCATTTGATCTAAATAGATTGCCATTTTGTAAACAAAT
65 -GAACATTCCATGC-TCGGAAATCGCATCATTTG-TCTAAATAGTTTGTCATTTTCTAAACAACT
* * *
781 TTTGGTCTTTAAATTAAAATCTTATATACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACT
127 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
846 TTCGAACTTGATGAAGTTTTGCA
192 TTCGAACTTGA-AAACTTTTACA
* *
869 AGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCAATTTTTCG
1 AGTTCTTCTAAAACTTCAGTTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTCG
* * *
934 AGCATTCCATGCAT-GCGAAATTGCATCATTTTGTCTAAATAGTTTGTCATTTTCTAAACAACAT
66 AACATTCCATGC-TCG-GAAATCGCATCA-TTTGTCTAAATAGTTTGTCATTTTCTAAACAACTT
* * * * * * *
998 TTGATCTTTCAATT-AAAACCTATTTATGTCAGAACTGTTTCTCTCTTGGTTCTTAGACGAACTT
128 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** **
1062 TC-ACACTTGACATCCTTTTATG
193 TCGA-ACTTGA-AAACTTTTACA
* * * ** * *
1084 AGTTCTTCTATAACTTC-GATTTCTTAGAGTATTCAAAACAATCCATTCCTTAGAGCAATTTTTT
1 AGTTCTTCTAAAACTTCAG-TTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTC
* *
1148 GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTT
65 GAACATTCCATGCTC-GGAAATCGCATCATTT-GTCTAAATAGTTTGTCATTTTCTAAACAACTT
* * * * *
1213 TTGGTCTTTCAATGAATAACTTATTTACGTGAGAGTTGTTTCTCTGTTGGTTCTTGGACGAAC-T
128 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* *
1277 TCTGAACTTGGAAAACTTTAACC
193 TC-GAACTT-GAAAACTTTTACA
* * * * *
1300 AGTTCATCTATAACTTTCA-TTCCTTAAAGTATTCATGACAATCCATTCATTCAAGCAATATTTC
1 AGTTCTTCTAAAAC-TTCAGTTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTC
**
1364 GAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTT-TCCATTTAGTAAACAACT
65 GAACATTCCATGCTCGG-AAATCGCATCATTT-GTCTAAATAGTTTGT-CATTTTCTAAACAACT
* *
1428 TTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACT
127 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * *
1493 TTCGAACTTGATGTAGTTTTGCA
192 TTCGAACTTGA-AAACTTTTACA
* *
1516 AGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCAATTTTTCG
1 AGTTCTTCTAAAACTTCAGTTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTCG
* * *
1581 AACATTACATG--C----AT--CAT--TTTGTCTAAATAGTATG---TTTTCTAAGCAACTTTTG
66 AACATTCCATGCTCGGAAATCGCATCATTTGTCTAAATAGTTTGTCATTTTCTAAACAACTTTTG
* * * * * * * *
1633 GTCTTTGAATTAAAAACCTATTTACGTGAGAGTTGTTTTTCTCTTGGTTCTTAGATGAACTTCCA
131 GTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCG
*
1698 AACTTAACAAACTTTTACA
196 AACTTGA-AAACTTTTACA
* * * *
1717 AGTTCTTC-AATAACTTCGGTTTCTTAAAGTATTCAGGACAATCCATTCCTTCGAGCAATTTTTT
1 AGTTCTTCTAA-AACTTCAGTTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTC
* * * *
1781 GAATATTCCATGCTCGGAAATCTCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACTACTTT
65 GAACATTCCATGCTCGGAAATCGCATCATTT-GTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* ** *** **** *
1846 TGGTCTTTGAATTAAAAACTTATTTACGT--G-ATTG-GACGAACTTCCCAACTTGG-CAAACAT
129 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAAC-T
* * **
1906 TTACGAGTTCTTTTATTAC-TTT---
192 TT-CGA--AC-TTGAAAACTTTTACA
* * * * * * * * **
1928 AGTTC--C-ATAAA-GT-A-TT-CATGACG-ATCCATTAC-TTCGAGCAATT--TTCCA--AACA
1 AGTTCTTCTA-AAACTTCAGTTCCTTAAAGTATTCATGACAATC---C-ATTCCTTCGAGCAATT
* * * * * * **
1980 TTT----CA-TGC-T--TGGGAAATCGCATCATTTTTTCTTTACTA-TTTATCATTTGGTAAACA
61 TTTCGAACATTCCATGCTCGGAAATCGCATCA-TTTGTC-TAAATAGTTTGTCATTTTCTAAACA
* * * * * * *
2036 ACTTTTGGTCTTTGAATGAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGATATTAGATGA
124 ACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * *
2101 AC-TTCTAAACTTGACAAACTTTGACG
189 ACTTTC-GAACTTGA-AAACTTTTACA
* * * *
2127 AGTTCTTC-AATAACTTCGGTTCTTTAAAGTATTCATGACGATCCATTCCTTCGAGCAATTTTCC
1 AGTTCTTCTAA-AACTTCAGTTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTC
* * * * **
2191 GAACATTTCATGCTTGGGAAATCGCATCCTTTTTTCTAAACTA-TTTGTCATTTGGTAAACAACT
65 GAACATTCCATGC-TCGGAAATCGCAT-CATTTGTCTAAA-TAGTTTGTCATTTTCTAAACAACT
* * * * * *** *
2255 TTTTGTCTTTGAATGAAAAACTTATTTACATGAGAATTGTTTCTCGCTTGGAAATTGGATGAAC-
127 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * **
2319 TTCTAAACTTGACAAACTTTGATG
192 TTC-GAACTTGA-AAACTTTTACA
* * * * * *
2343 AGTTCTTCTATAACTTCGGTTCTTTAAAGTATTTAGGACAATCCATT-CTCTCGAGTAA-TTTTC
1 AGTTCTTCTAAAACTTCAGTTCCTTAAAGTATTCATGACAATCCATTCCT-TCGAGCAATTTTTC
* * * ** * * * *
2406 TAAACATTCAATGCTTGGGAAATTACATCATTTTGTCTACACAGTTTGTCATTTTGTATACAACT
65 -GAACATTCCATGC-TCGGAAATCGCATCA-TTTGTCTAAATAGTTTGTCATTTTCTAAACAACT
* * * *
2471 TTTGGTCATTGAATTAAAAACTTATTTACATGAGAATT-TATTATCTCTTGG
127 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGT-TTCTCTCTTGG
2522 ATCAAGGGTA
Statistics
Matches: 1866, Mismatches: 332, Indels: 206
0.78 0.14 0.09
Matches are distributed among these distances:
194 3 0.00
195 64 0.03
196 10 0.01
197 5 0.00
198 10 0.01
199 13 0.01
200 3 0.00
201 152 0.08
202 1 0.00
203 11 0.01
204 21 0.01
205 18 0.01
206 10 0.01
207 14 0.01
208 1 0.00
209 9 0.00
210 1 0.00
211 16 0.01
212 23 0.01
213 4 0.00
214 10 0.01
215 258 0.14
216 1177 0.63
217 32 0.02
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (213 bp):
AGTTCTTCTAAAACTTCAGTTCCTTAAAGTATTCATGACAATCCATTCCTTCGAGCAATTTTTCG
AACATTCCATGCTCGGAAATCGCATCATTTGTCTAAATAGTTTGTCATTTTCTAAACAACTTTTG
GTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCG
AACTTGAAAACTTTTACA
Found at i:823 original size:432 final size:430
Alignment explanation
Indices: 5--2505 Score: 2413
Period size: 432 Copynumber: 5.9 Consensus size: 430
1 TACC
* * *
5 AGTTCATCTATAACTTTC-ATTCCTTAAAGTATTCATGACAATCCATTCCTTCA-AGCAATATTT
1 AGTTCTTCTATAAC-TTCGATTTCTTAAAGTATTCATGACAATCCATTCCTT-AGAGCAATTTTT
* * * * * *
68 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGCCATTTTGTAAACAATT
64 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACT
* * * * *
133 TTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACT
129 TTTGGTCTTTCAATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * * *
198 T-TCGAACTTGATGAAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGACGA
194 TCT-GAACTTGACAAACTTTTACGAGTTCTTCTATAACTTC-GTTCCTTAAAGTATTCATGACAA
** *
262 TCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCACAGGG-AATCGCTTCATTATGTCTAAAT
257 TCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGC-TTGGGAAATCGCATCATT-TGTCTAAAT
* * ** * *
326 AGTTTGTCATTTTCTAAACAACTGTTGCTCTTTGAATTAAATTCCTATTTATGTGAGAGTTGTTT
320 AGTTTGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTT
* *
391 CTCTCTTGGTTCTTAGACAAACTTTCAAACTTGACATACTTTTACA
385 CTCTCTTGGTTCTTAGACGAACTTTCAAACTTGACAAACTTTTACA
* * *
437 AGTTCTTCTATAACTTCGATTTCTTAAAGTATTCAAGATAATCCATTCCTTAGAGTAATTTTTTG
1 AGTTCTTCTATAACTTCGATTTCTTAAAGTATTCATGACAATCCATTCCTTAGAGCAATTTTTTG
* * * *
502 AATATTCCATTCTCAGGAAATCGCATCAGTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTT
* * * *
567 TGGTCTTTCAATGAAAAACTTATTAACCTGAGAGTTGTTTCTGTCTTGGTTCTTGGACGAACTTC
131 TGGTCTTTCAATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* *
632 TGAACTTG-CAAAACTTTTACCAGTTCATCTATAACTTTCGTTCCTTAAAGTATTCATGACAATC
196 TGAACTTGAC-AAACTTTTACGAGTTCTTCTATAAC-TTCGTTCCTTAAAGTATTCATGACAATC
* *
696 CATTCCTTCAAGCAA-TGTTCTGAACATTCCAAGCTTGGGAAATCGCATCATTTGATCTAAATAG
259 CATTCCTTCGAGCAATTTTTC-GAACATTCCAAGCTTGGGAAATCGCATCATTTG-TCTAAATAG
* * * * * * * *
760 ATTGCCATTTTGTAAACAAATTTTGGTCTTTAAATTAAAATCTTATATACGTGAGAATTGTTTCT
322 TTTGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCT
* * * ** * *
825 CTCTTTGTTCTTGGACGAACTTTCGAACTTGATGAAGTTTTGCA
387 CTCTTGGTTCTTAGACGAACTTTCAAACTTGACAAACTTTTACA
* * * * * *
869 AGTTCTTTTAAAACTTC-AGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCAATTTTTC
1 AGTTCTTCTATAACTTCGA-TTTCTTAAAGTATTCATGACAATCCATTCCTTAGAGCAATTTTTT
* * * * * *
933 GAGCATTCCATGCAT-GCGAAATTGCATCATTTTGTCTAAATAGTTTGTCATTTTCTAAACAACA
65 GAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACT
* * * * * * *
997 TTTGATCTTTCAAT-TAAAACCTATTTATGTCAGAACTGTTTCTCTCTTGGTTCTTAGACGAACT
129 TTTGGTCTTTCAATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * * **
1061 T-TCACACTTGACATCCTTTTATGAGTTCTTCTATAACTTCGATTTCTTAGAGTATTCAAAACAA
194 TCTGA-ACTTGACAAACTTTTACGAGTTCTTCTATAACTTCG-TTCCTTAAAGTATTCATGACAA
* * * * *
1125 TCCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
257 TCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTTGGGAAATCGCATCATTT-GTCTAAATA
* * * *
1190 CTTTGTCATTTTCTAAACAACTTTTGGTCTTTCAATGAATAACTTATTTACGTGAGAGTTGTTTC
321 GTTTGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTC
* * * * *
1255 TCTGTTGGTTCTTGGACGAAC-TTCTGAACTTGGA-AAACTTTAACC
386 TCTCTTGGTTCTTAGACGAACTTTC-AAACTT-GACAAACTTTTACA
* * * *
1300 AGTTCATCTATAACTTTC-ATTCCTTAAAGTATTCATGACAATCCATTCATTCA-AGCAATATTT
1 AGTTCTTCTATAAC-TTCGATTTCTTAAAGTATTCATGACAATCCATTCCTT-AGAGCAATTTTT
* * * **
1363 CGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTT-TCCATTTAGTAAACAAC
64 TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATACTTTGT-CATTTTCTAAACAAC
* * * *
1427 TTTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC
128 TTTTGGTCTTTCAATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
*** * * * * * *
1492 TT-TCGAACTTGATGTAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGACG
193 TTCT-GAACTTGACAAACTTTTACGAGTTCTTCTATAACTTC-GTTCCTTAAAGTATTCATGACA
1556 ATCCATTCCTTCGAGCAATTTTTCGAACATT---A-C-------AT-GCATCATTTTGTCTAAAT
256 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTTGGGAAATCGCATCA-TTTGTCTAAAT
* * *
1609 AGTATG---TTTTCTAAGCAACTTTTGGTCTTTGAATTAAAAACCTATTTACGTGAGAGTTGTTT
320 AGTTTGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTT
* * * *
1671 TTCTCTTGGTTCTTAGATGAACTTCCAAACTTAACAAACTTTTACA
385 CTCTCTTGGTTCTTAGACGAACTTTCAAACTTGACAAACTTTTACA
* * * *
1717 AGTTCTTCAATAACTTCGGTTTCTTAAAGTATTCAGGACAATCCATTCCTTCGAGCAATTTTTTG
1 AGTTCTTCTATAACTTCGATTTCTTAAAGTATTCATGACAATCCATTCCTTAGAGCAATTTTTTG
* * *
1782 AATATTCCATGCTC-GGAAATCTCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACTACTTT
66 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTT
* *
1846 TGGTCTTTGAATTAAAAACTTATTTACGT--G-A------------------TTGGACGAACTTC
131 TGGTCTTTCAATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
** * * * * * * *
1890 CCAACTTGGCAAACATTTACGAGTTCTTTTATTACTTTAGTTCCATAAAGTATTCATGACGATCC
196 TGAACTTGACAAACTTTTACGAGTTCTTCTATAAC-TTCGTTCCTTAAAGTATTCATGACAATCC
* * * * * * * *
1955 ATTACTTCGAGCAATTTTCCAAACATTTCATGCTTGGGAAATCGCATCATTTTTTCTTTACTA-T
260 ATTCCTTCGAGCAATTTTTCGAACATTCCAAGCTTGGGAAATCGCATCA-TTTGTC-TAAATAGT
* ** * * *
2019 TTATCATTTGGTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTTACATGAGAATTGTTTCTC
323 TTGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTC
* * * * *
2084 TCTTGGATATTAGATGAAC-TTCTAAACTTGACAAACTTTGACG
388 TCTTGGTTCTTAGACGAACTTTC-AAACTTGACAAACTTTTACA
* * * * **
2127 AGTTCTTCAATAACTTCG-GTTCTTTAAAGTATTCATGACGATCCATTCCTTCGAGCAATTTTCC
1 AGTTCTTCTATAACTTCGATTTC-TTAAAGTATTCATGACAATCCATTCCTTAGAGCAATTTTTT
* * * ** **
2191 GAACATTTCATGCTTGGGAAATCGCATCCTTTTTTCTAAACTA-TTTGTCATTTGGTAAACAACT
65 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TACTTTGTCATTTTCTAAACAACT
* * * * *** *
2255 TTTTGTCTTTGAATGAAAAACTTATTTACATGAGAATTGTTTCTCGCTTGGAAATTGGATGAACT
129 TTTGGTCTTTCAATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
2320 TCTAAACTTGACAAACTTTGATGAGTTCTTCTATAACTTCGGTTCTTTAAAGTATTTAGGACAAT
194 TCTGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTC-GTTCCTTAAAGTATTCATGACAAT
* * ** *
2385 CCATT-CTCTCGAGTAA-TTTTCTAAACATT-CAATGCTTGGGAAATTACATCATTTTGTCTACA
258 CCATTCCT-TCGAGCAATTTTTC-GAACATTCCAA-GCTTGGGAAATCGCATCA-TTTGTCTAAA
* * * * *
2447 CAGTTTGTCATTTTGTATACAACTTTTGGTCATTGAATTAAAAACTTATTTACATGAGA
319 TAGTTTGTCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
2506 ATTTATTATC
Statistics
Matches: 1703, Mismatches: 288, Indels: 156
0.79 0.13 0.07
Matches are distributed among these distances:
395 84 0.05
396 2 0.00
399 1 0.00
406 2 0.00
407 14 0.01
408 4 0.00
409 5 0.00
410 152 0.09
411 66 0.04
412 2 0.00
413 2 0.00
414 2 0.00
416 73 0.04
417 148 0.09
418 2 0.00
420 17 0.01
421 5 0.00
428 1 0.00
430 11 0.01
431 362 0.21
432 741 0.44
433 7 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (430 bp):
AGTTCTTCTATAACTTCGATTTCTTAAAGTATTCATGACAATCCATTCCTTAGAGCAATTTTTTG
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTT
TGGTCTTTCAATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
TGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGTTCCTTAAAGTATTCATGACAATCCA
TTCCTTCGAGCAATTTTTCGAACATTCCAAGCTTGGGAAATCGCATCATTTGTCTAAATAGTTTG
TCATTTTCTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCT
TGGTTCTTAGACGAACTTTCAAACTTGACAAACTTTTACA
Found at i:1355 original size:647 final size:642
Alignment explanation
Indices: 1--2505 Score: 3113
Period size: 647 Copynumber: 3.9 Consensus size: 642
*
1 TACCAGTTCATCTATAACTTTCATTCCTTAAAGTATTCATGACAATCCATTCCTTCAAGCAATAT
1 TACCAGTTCATCTATAACTTTCATTCCTTAAAGTATTCATGACAATCCATTCATTCAAGCAATAT
* *
66 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGCCATTTTGTAAACAA
66 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTTTGTAAACAA
* *
131 TTTTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAA
131 CTTTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAA
196 CTTTCGAACTTGATGAAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGACG
196 CTTTCGAACTTGATGAAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGACG
* * * * *
261 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCAAGCACAGGGAATCGCTTCATTATGTCTAAAT
261 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCA-TGGAAATCGCATCATTTTGTCTAAAT
* * * *
326 AGTTTGTCATTTTCTAAACAACTGTTGCTCTTTGAATTAAATTCCTATTTATGTGAGAGTTGTTT
325 AGTTTGTCATTTTCTAAACAACTTTTG-TCTTTGAATTAAA-ACCTATTTACGTGAGAATTGTTT
* *
391 CTCTCTTGGTTCTTAGACAAACTTTCAAACTTGACATACTTTTACAAGTTCTTCTATAACTTCGA
388 CTCTCTTGGTTCTTAGACGAACTTTCAAACTTGACAAACTTTTACAAGTTCTTCTATAACTTCGA
* * * * *
456 TTTCTTAAAGTATTCAAGATAATCCATTCCTTAGAGTAATTTTTTGAATATTCCATTCTCAGGAA
453 TTTCTTAAAGTATTCAAGACAATCCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAA
* *
521 ATCGCATCAGTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTTTGGTCTTTCAATGAAAAAC
518 ATCACATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTTTGGTCTTTCAATGAAAAAC
* * *
586 TTATTAACCTGAGAGTTGTTTCTGTCTTGGTTCTTGGACGAACTTCTGAACTTGCAAAACTTT
583 TTATTTACGTGAGAGTTGTTTCT-T-TTGGTTCTTGGACGAACTTCTGAACTTGGAAAAC-TT
* * *
649 TACCAGTTCATCTATAACTTTCGTTCCTTAAAGTATTCATGACAATCCATTCCTTCAAGCAAT-G
1 TACCAGTTCATCTATAACTTTCATTCCTTAAAGTATTCATGACAATCCATTCATTCAAGCAATAT
* * * *
713 TTCTGAACATTCCAAGCTTGGGAAATCGCATCATTTGATCTAAATAGATTGCCATTTTGTAAACA
66 TTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTTTGTAAACA
* *
778 AATTTTGGTCTTTAAATTAAAATCTTATATACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGA
130 ACTTTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGA
843 ACTTTCGAACTTGATGAAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGAC
195 ACTTTCGAACTTGATGAAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGAC
* *
908 GATCCATTCCTTCGAGCAATTTTTCGAGCATTCCATGCATGCGAAATTGCATCATTTTGTCTAAA
260 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCATG-GAAATCGCATCATTTTGTCTAAA
* * * * *
973 TAGTTTGTCATTTTCTAAACAACATTTGATCTTTCAATTAAAACCTATTTATGTCAGAACTGTTT
324 TAGTTTGTCATTTTCTAAACAACTTTTG-TCTTTGAATTAAAACCTATTTACGTGAGAATTGTTT
* ** **
1038 CTCTCTTGGTTCTTAGACGAACTTTCACACTTGACATCCTTTTATGAGTTCTTCTATAACTTCGA
388 CTCTCTTGGTTCTTAGACGAACTTTCAAACTTGACAAACTTTTACAAGTTCTTCTATAACTTCGA
* *
1103 TTTCTTAGAGTATTCAAAACAATCCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAA
453 TTTCTTAAAGTATTCAAGACAATCCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAA
*
1168 ATCACATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTTTGGTCTTTCAATGAATAAC
518 ATCACATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTTTGGTCTTTCAATGAAAAAC
1233 TTATTTACGTGAGAGTTGTTTCTCTGTTGGTTCTTGGACGAACTTCTGAACTTGGAAAACTT
583 TTATTTACGTGAGAGTTGTTTCT-T-TTGGTTCTTGGACGAACTTCTGAACTTGGAAAACTT
1295 TAACCAGTTCATCTATAACTTTCATTCCTTAAAGTATTCATGACAATCCATTCATTCAAGCAATA
1 T-ACCAGTTCATCTATAACTTTCATTCCTTAAAGTATTCATGACAATCCATTCATTCAAGCAATA
* * *
1360 TTTCGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTTCCATTTAGTAAACA
65 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTTTGTAAACA
1425 ACTTTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGA
130 ACTTTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGA
*
1490 ACTTTCGAACTTGATGTAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGAC
195 ACTTTCGAACTTGATGAAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGAC
1555 GATCCATTCCTTCGAGCAATTTTTCGAACATT--A--C------AT-GCATCATTTTGTCTAAAT
260 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCATGGAAATCGCATCATTTTGTCTAAAT
* * *
1609 AGTATG---TTTTCTAAGCAACTTTTGGTCTTTGAATTAAAAACCTATTTACGTGAGAGTTGTTT
325 AGTTTGTCATTTTCTAAACAACTTTT-GTCTTTGAATT-AAAACCTATTTACGTGAGAATTGTTT
* * * * * *
1671 TTCTCTTGGTTCTTAGATGAACTTCCAAACTTAACAAACTTTTACAAGTTCTTCAATAACTTCGG
388 CTCTCTTGGTTCTTAGACGAACTTTCAAACTTGACAAACTTTTACAAGTTCTTCTATAACTTCGA
* * *
1736 TTTCTTAAAGTATTCAGGACAATCCATTCCTTCGAGCAATTTTTTGAATATTCCATGCTC-GGAA
453 TTTCTTAAAGTATTCAAGACAATCCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAA
* * * *
1800 ATCTCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACTACTTTTGGTCTTTGAATTAAAAAC
518 ATCACATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTTTGGTCTTTCAATGAAAAAC
** *
1865 TTATTTACGT--GA-----------------TTGGACGAACTTCCCAACTTGGCAAACATT
583 TTATTTACGTGAGAGTTGTTTCTTTTGGTTCTTGGACGAACTTCTGAACTTGGAAAAC-TT
* * * * * * *
1907 TACGAGTTCTTTTATTACTTT-AGTTCCATAAAGTATTCATGACGATCCATT-ACTTCGAGCAAT
1 TACCAGTTCATCTATAACTTTCA-TTCCTTAAAGTATTCATGACAATCCATTCA-TTCAAGCAAT
* * * ** * * ** *
1970 -TTTCCAAACATTTCATGCTTGGGAAATCGCATCATTTTTTCTTTACTA-TTTATCATTTGGTAA
64 ATTT-CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC-TAAATAGTTTGCCATTTTGTAA
* * * * * * * *
2033 ACAACTTTTGGTCTTTGAATGAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGATATTAGA
127 ACAACTTTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGA
* * * ** * * * *
2098 TGAAC-TTCTAAACTTGA-CAAACTTTGACGAGTTC-TTCAATAACTTCGGTTCTTTAAAGTATT
192 CGAACTTTC-GAACTTGATGAAGTTTTG-CAAGTTCTTTTAA-AACTTCAGTTCCTTAAAGTATT
* * * * *
2160 CATGACGATCCATTCCTTCGAGCAATTTTCCGAACATTTCATGCTTGGGAAATCGCATCCTTTTT
254 CATGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCAT-GGAAATCGCATCATTTTG
** * * *
2225 TCTAAACTA-TTTGTCATTTGGTAAACAACTTTTTGTCTTTGAATGAAAAACTTATTTACATGAG
318 TCTAAA-TAGTTTGTCATTTTCTAAACAAC-TTTTGTCTTTGAAT-TAAAACCTATTTACGTGAG
* *** * * * **
2289 AATTGTTTCTCGCTTGGAAATTGGATGAAC-TTCTAAACTTGACAAACTTTGATGAGTTCTTCTA
380 AATTGTTTCTCTCTTGGTTCTTAGACGAACTTTC-AAACTTGACAAACTTTTACAAGTTCTTCTA
* * * * * * * *
2353 TAACTTCG-GTTCTTTAAAGTATTTAGGACAATCCATT-CTCTCGAGTAATTTTCTAAACATTCA
444 TAACTTCGATTTC-TTAAAGTATTCAAGACAATCCATTCCT-TAGAGCAATTTTTTGAACATTCC
* * * * * * * * *
2416 ATGCTTGGGAAATTACATCATTTTGTCTACACAGTTTGTCATTTTGTATACAACTTTTGGTCATT
507 ATGCTCGGGAAATCACATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTTTGGTCTTT
* * *
2481 GAATTAAAAACTTATTTACATGAGA
572 CAATGAAAAACTTATTTACGTGAGA
2506 ATTTATTATC
Statistics
Matches: 1649, Mismatches: 170, Indels: 95
0.86 0.09 0.05
Matches are distributed among these distances:
610 17 0.01
611 249 0.15
612 7 0.00
613 1 0.00
615 1 0.00
622 2 0.00
623 18 0.01
624 2 0.00
625 7 0.00
626 138 0.08
627 72 0.04
629 2 0.00
630 2 0.00
632 98 0.06
633 132 0.08
635 23 0.01
636 2 0.00
643 1 0.00
645 1 0.00
646 3 0.00
647 530 0.32
648 341 0.21
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (642 bp):
TACCAGTTCATCTATAACTTTCATTCCTTAAAGTATTCATGACAATCCATTCATTCAAGCAATAT
TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTTTGTAAACAA
CTTTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAA
CTTTCGAACTTGATGAAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATGACG
ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCATGGAAATCGCATCATTTTGTCTAAATA
GTTTGTCATTTTCTAAACAACTTTTGTCTTTGAATTAAAACCTATTTACGTGAGAATTGTTTCTC
TCTTGGTTCTTAGACGAACTTTCAAACTTGACAAACTTTTACAAGTTCTTCTATAACTTCGATTT
CTTAAAGTATTCAAGACAATCCATTCCTTAGAGCAATTTTTTGAACATTCCATGCTCGGGAAATC
ACATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTTTGGTCTTTCAATGAAAAACTTA
TTTACGTGAGAGTTGTTTCTTTTGGTTCTTGGACGAACTTCTGAACTTGGAAAACTT
Found at i:1745 original size:201 final size:201
Alignment explanation
Indices: 1423--1793 Score: 510
Period size: 201 Copynumber: 1.8 Consensus size: 201
1413 ATTTAGTAAA
* * * *
1423 CAACTTTTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGAC
1 CAACTTTTGGTCTTTAAATTAAAAACCTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGAC
* * * *** * * * *
1488 GAACTTTCGAACTTGATGTAGTTTTGCAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCATG
66 GAACTTCCAAACTTAACAAACTTTTACAAGTTCTTTCAAAACTTCAGTTCCTTAAAGTATTCAGG
*
1553 ACGATCCATTCCTTCGAGCAATTTTTCGAACATTACATGCATCATTTTGTCTAAATAGTATGTTT
131 ACAATCCATTCCTTCGAGCAATTTTTCGAACATTACATGCATCATTTTGTCTAAATAGTATGTTT
1618 TCTAAG
196 TCTAAG
* * * *
1624 CAACTTTTGGTCTTTGAATTAAAAACCTATTTACGTGAGAGTTGTTTTTCTCTTGGTTCTTAGAT
1 CAACTTTTGGTCTTTAAATTAAAAACCTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGAC
* *
1689 GAACTTCCAAACTTAACAAACTTTTACAAGTTC-TTCAATAACTTCGGTTTCTTAAAGTATTCAG
66 GAACTTCCAAACTTAACAAACTTTTACAAGTTCTTTCAA-AACTTCAGTTCCTTAAAGTATTCAG
* * *
1753 GACAATCCATTCCTTCGAGCAATTTTTTGAATATTCCATGC
130 GACAATCCATTCCTTCGAGCAATTTTTCGAACATTACATGC
1794 TCGGAAATCT
Statistics
Matches: 145, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
200 4 0.03
201 141 0.97
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (201 bp):
CAACTTTTGGTCTTTAAATTAAAAACCTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGAC
GAACTTCCAAACTTAACAAACTTTTACAAGTTCTTTCAAAACTTCAGTTCCTTAAAGTATTCAGG
ACAATCCATTCCTTCGAGCAATTTTTCGAACATTACATGCATCATTTTGTCTAAATAGTATGTTT
TCTAAG
Found at i:2474 original size:21 final size:22
Alignment explanation
Indices: 2433--2480 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
2423 GGAAATTACA
*
2433 TCATTTTGTCTACACAGTTT-G
1 TCATTTTGTATACACAGTTTGG
*
2454 TCATTTTGTATACA-ACTTTTGG
1 TCATTTTGTATACACA-GTTTGG
2476 TCATT
1 TCATT
2481 GAATTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50
Consensus pattern (22 bp):
TCATTTTGTATACACAGTTTGG
Found at i:2992 original size:216 final size:216
Alignment explanation
Indices: 2583--5820 Score: 3371
Period size: 216 Copynumber: 15.1 Consensus size: 216
2573 TTTGGTTCTA
* ** * * * *
2583 AACATTCCATGCTTGGGAAATTACATCATTTTGTCTACACAGTTTG-CTATTTTGTAAACAACTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTCTAAACAACTT
* * * * *
2647 TTGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTT
* ** * * * * * * *
2712 TCGAACTTGATGAAGTTTCACAAGTTCTTTTAAAACTTC-AGTTCCTTAAACTATTCATGACGAT
130 CCGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGA-TTCCTTAAAGTATTCATGACAAT
*
2776 CCATTCCTTCGAGCAATTTTCCG
194 CCATTCCTTCGAGCAATTTTTCG
* * ** * **
2799 AACATTTCATGCTTGGGAAATCGCATCATTTTTTCTATACTA-TTTGTCATTTGGTAAACAACTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA-AATAGTTTGTCATTTTCTAAACAACTT
* * * * *** *
2863 TTTGTCTTTGAATGAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGAAATTGGATGAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTT
*** * * * *
2928 TTAAACTTGACAAACTTTGACGAGTTCTTCTATAACTTCGATTCTTTAAAGTATTCAGGACGATC
130 CCGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCATGACAATC
* *
2993 TATTCCTTCGAGCAATTTTTTG
195 CATTCCTTCGAGCAATTTTTCG
* * * ** ** *
3015 AACATTCCATGCTTGGGAAATCACATCATTTTGTCTACGTAGTTTGTCATTTGGTATACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * * * * *
3080 TGGTCATTGAATTAAAAACTTATTTACGTGAGA---ATTTAT-T-AT-GTTCATGGACAAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * *
3139 CGAACTTCACAAACTTTTACCAGTTGTTCTATAACTTTGGTTCATTAAAAGTATTCATGACAATC
131 CGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGATTCCTT-AAAGTATTCATGACAATC
* * *
3204 CATTCCTTCAAGTAATTTTTCA
195 CATTCCTTCGAGCAATTTTTCG
** * * * * *
3226 AACATTCCA---T-GGGAAATAACATAATTTAGTCTAAATAGTTTGTCACTTTGTAAACAATTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * * * * * *
3287 TGGTCTATAAATTTAAAAGTTATTTATGTGAGAGTGGTTTCTCTCTTGGTTCTTAGACGAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* *
3352 C-AAGCTTGACATACTTTTACGAGTTCTTCTATAACTTTC-TTTCCTTAAAGTATTCATGACAAT
131 CGAA-CTTGACAAACTTTTACGAGTTCTTCTATAAC-TTCGATTCCTTAAAGTATTCATGACAAT
* *
3415 CCATTCCTTCAAGCAATTTTCCG
194 CCATTCCTTCGAGCAATTTTTCG
* *
3438 AACATTCCATGCTCGGGAAAGTCGCATCATTTGGTCTAAATAGTTTGCCATTTTGTAAA-AACCT
1 AACATTCCATGCTCGGGAAA-TCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAA-CT
* * * * * *
3502 TTTGGTCTTTAAATTAAAATCTTATTTACGTAAGAATTGCTTCTCTCTTTGTTCTTGGACGAACT
64 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * * **
3567 TCTGAACTTGATGAAGTTTTACGAGTTCATT-TAAAACTTCAATTCCTTAAAGTATTCATGATGA
129 TCCGAACTTGACAAACTTTTACGAGTTC-TTCTATAACTTCGATTCCTTAAAGTATTCATGACAA
3631 TCCATTCCTTCGAGCAATTTTTCG
193 TCCATTCCTTCGAGCAATTTTTCG
* * * * * *
3655 GACATTCCATGCACGAGAAATCACATCATTTTGTCTAAATAGTTTGTCATTTTATAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * * ** * *
3720 TGGTCTTTGAATTAAAAACCTATTTACATGAGCGTTGTTT-TCCTCTTTCTTCTTAGATGAACTT
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCT-CTCTTGGTTCTTGGACGAACTT
* * * *
3784 CCAAACTTGACAAACTTTTACGAGTTCTTCAATAACTTCGGTTTCTTAAAGTATTC-TGGACAAT
130 CCGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCAT-GACAAT
* *
3848 CCATTCCTTAGAGCAATTTTTTG
194 CCATTCCTTCGAGCAATTTTTCG
* ** *
3871 AACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAAATACATTGTCATTTTCTAAACTACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * * * *
3936 TGGTCTTTGAATGAAAAACTTATTTTCGTGAGAGTTGTTTTTATCTTGGTTCTTGGACGAACTTT
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * *
4001 CGAACTTGGA-AAACTTTTACGAGATCTTTTATAACTT-TAGCTCCATAAAGTATTCATGACGAT
131 CGAACTT-GACAAACTTTTACGAGTTCTTCTATAACTTCGA-TTCCTTAAAGTATTCATGACAAT
*
4064 CCATTCCTTCGACCAATTTTTCG
194 CCATTCCTTCGAGCAATTTTTCG
* * * *
4087 AACATTCCAAGCACAGGG-AATCGCTTCATTAT-ATCTAAATAGTTTGTCATTTTCTAAACAA-T
1 AACATTCCATGCTC-GGGAAATCGCATCATT-TGGTCTAAATAGTTTGTCATTTTCTAAACAACT
** ** * *
4149 TGTTACTCTTTGAATTAAATTCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAAC
64 T-TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
4214 TTTCAAACTTGACATACTTTTACGAGTTCTTCTATAACTTCGATTTCTTAAAGTATTCAAGACAA
128 TTCCGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCATGACAA
* * *
4279 TCCATTCCTTAGAGTAATTTTTTG
193 TCCATTCCTTCGAGCAATTTTTCG
* * *
4303 AACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAATTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * *
4368 TGGTCTTTCAATGAAAAACTTATTAACGTGAGAGTTGTTTCTCTCTTTGG-TCTTGGACGAACTT
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTC-TTGGTTCTTGGACGAACTT
* * * * * * * **
4432 CTGAACTTGACGAAGTTTTATGAGTTCTTTTAAAACTTC-AGTTCCTTAAAGTGTTCATGATGAT
130 CCGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGA-TTCCTTAAAGTATTCATGACAAT
* * *
4496 ACATTCCGTCGAGCAGTTTTTCG
194 CCATTCCTTCGAGCAATTTTTCG
* * * *
4519 AACAATCCAAT-CACGGAAAATCGCATCATTAT-GTCTAAATAGTTTGTCATTTTCTAAACAACA
1 AACATTCC-ATGCTCGGGAAATCGCATCATT-TGGTCTAAATAGTTTGTCATTTTCTAAACAACT
* * * * *
4582 TTTGGTCTTTGAATT-AAAACCTATTTATGTGAGAATTGATTCTCTCTTGGTTCTTAGACGAACT
64 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * * *
4646 TCCAAACTTGACATCCTTTTATGAGTTCTTCTATAACTTCGATTTCTTAGAGTATTCAAGACAAT
129 TCCGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCATGACAAT
* *
4711 CCATTCCTTAGAGCAATTTTTTG
194 CCATTCCTTCGAGCAATTTTTCG
* * *
4734 AACATTCCATACTCGGGAAATCGCATCATTTGGTCTACATACTTTGTCATTTTCTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * * *
4799 TGGTCTTTCAATGAAAAACTTATTTACGTGAGAGTTATTTCTCTCTTGGTTCTTGGATGAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * *
4864 TGAACTCGGA-AAACTTTTACCAGTTCATCTATAACTT-TAGTTCCTTAAAGTATTCATGACAAT
131 CGAACT-TGACAAACTTTTACGAGTTCTTCTATAACTTCGA-TTCCTTAAAGTATTCATGACAAT
* *
4927 CCATTCCTTCAAGCAA-TGTTCTG
194 CCATTCCTTCGAGCAATTTTTC-G
* * * *
4950 AACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGCCATTTTGTAAACAATTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * * * *
5015 TGGTCTTTAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTT
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTC
** * * * * * *
5080 CGAACTTGATGAAGTTTTGCAAGTTCTTTTAAAACTTC-AGTTCCTTAAAGTATTCATGACGATC
131 CGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGA-TTCCTTAAAGTATTCATGACAATC
5144 CATTCCTTCGAGCAATTTTTCG
195 CATTCCTTCGAGCAATTTTTCG
* * *
5166 AACATTCCAAGCACAGGG-AATCGCTTCATTAT-GTCTAAATAGTTTGTCATTTTCTAAACAACT
1 AACATTCCATGCTC-GGGAAATCGCATCATT-TGGTCTAAATAGTTTGTCATTTTCTAAACAACT
* * ** * * * **
5229 GTTGCTCTTTGAATTAAATTCCTATTTATGTGAGAGTTGTTTCTCTCTTGGTTCTTAGATAAACT
64 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
5294 TTCAAACTTGATATACTTTTACGAGTTCTTCTATAACTTCGATTTCTTAAAGTATTCAAGATAAT
129 TCCGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCATGACAAT
* * *
5359 CCATTCCTTAGAGTAATTTTTTG
194 CCATTCCTTCGAGCAATTTTTCG
* *
5382 AACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATACTTTGTCATTTTCTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * * *
5447 TGGTCTTTCAATGAAAAACTTATTAACATGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * *
5512 TGAACTTG-CAAAACTTTTACCAATTCATCTATAACTTTCG-TTCCTTAAAGTATTCATGACAAT
131 CGAACTTGAC-AAACTTTTACGAGTTCTTCTATAAC-TTCGATTCCTTAAAGTATTCATGACAAT
* * *
5575 CCATTCCTTCAAGCAA-TGTTCTA
194 CCATTCCTTCGAGCAATTTTTC-G
* * * * * *
5598 AACATTCCAAGCTTGGGAAATCGCATCATTTGGTCTAAATAGATTGCCATTTTGTAAACAAATTT
1 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
* * * * * * *
5663 CGGTCTTTAAATTAAAATCTTATATACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * * *
5728 TCG-A--TG---AAGTTTTGCAAGTTATTTTAAAACTTC-AGTTCCTTAAAGTATTCATGACGAT
131 -CGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGA-TTCCTTAAAGTATTCATGACAAT
5786 CCATTCCTTCGAGCAATTTTTCG
194 CCATTCCTTCGAGCAATTTTTCG
5809 AACATTCCATGC
1 AACATTCCATGC
5821 ATGCGAAATT
Statistics
Matches: 2506, Mismatches: 451, Indels: 135
0.81 0.15 0.04
Matches are distributed among these distances:
207 69 0.03
208 1 0.00
210 54 0.02
211 108 0.04
212 54 0.02
213 52 0.02
214 11 0.00
215 199 0.08
216 1745 0.70
217 209 0.08
218 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAACTTT
TGGTCTTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGACGAACTTC
CGAACTTGACAAACTTTTACGAGTTCTTCTATAACTTCGATTCCTTAAAGTATTCATGACAATCC
ATTCCTTCGAGCAATTTTTCG
Done.