genome.fa.s11537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011537.1 Kokia drynarioides strain JFW-HI SEQ_126523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45054

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7--537	211	2.5	210	80	8	549	41	13	18	26	1.87
7983--8046	34	1.9	33	83	3	83	45	6	3	45	1.44
8030--8119	6	15.7	6	72	9	71	55	3	1	40	1.24
8029--8086	23	2.5	24	91	8	93	56	3	1	37	1.26
8016--8098	41	2.0	41	88	4	123	56	3	1	38	1.24
8091--8119	10	2.7	11	89	10	51	48	6	0	44	1.29
8423--10158	209	8.3	209	86	2	2232	22	22	18	36	1.95
8423--10158	416	4.2	418	85	1	2234	22	22	18	36	1.95
23776--23912	29	4.7	29	77	6	134	36	7	22	33	1.82
23776--23912	59	2.3	58	84	7	170	36	7	22	33	1.82
23779--24057	88	3.2	87	74	9	235	36	5	21	35	1.77
23936--24277	29	11.7	29	71	16	194	35	1	24	38	1.65
23956--24277	30	11.0	29	72	16	177	35	1	24	38	1.64
25532--25571	16	2.5	16	91	0	62	45	0	0	55	0.99
26355--28950	216	12.0	216	84	2	3162	41	13	17	27	1.88
26354--29383	431	7.1	429	82	5	3274	41	13	17	27	1.87
26355--29383	647	4.7	649	82	5	3283	41	13	17	27	1.87
28754--29313	199	2.9	198	80	7	549	42	13	16	27	1.86
28979--29329	192	1.8	192	80	5	422	42	13	15	27	1.85
31770--31919	80	1.9	80	91	2	248	28	14	22	34	1.93
34485--34529	23	2.0	23	86	0	63	33	6	17	42	1.76
39054--39091	20	2.0	20	89	5	60	10	13	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39333--39592	128	2.0	128	97	0	493	48	13	18	18	1.80
43721--43758	20	2.0	20	84	5	51	7	15	2	73	1.17
43809--43851	20	2.2	20	86	0	59	9	11	4	74	1.20

Tables:   1

The End!